mRNA_P-wetherbeei_contig58026.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58026.1.1
Unique NamemRNA_P-wetherbeei_contig58026.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58026.1.1 vs. uniprot
Match: A0A2V8QP50_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8QP50_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 9.050e-7
Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:   13 EIATPFYPV-YMTAAAVAGARGVVRVRVPRATLAVFGLPYNPRRATDPITADLVVDNGGMVTALRFVQ 213
            E+AT F P+ YM A        +VRV +PRA LA FG+P N  R  + + AD++V   G   A+RFVQ
Sbjct:  193 EVATDFLPLGYMNATTFQDGGQIVRVELPRARLASFGIPVNMDRFNERVKADILVSVDGTARAIRFVQ 260
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BLAST of mRNA_P-wetherbeei_contig58026.1.1 vs. uniprot
Match: A0A2V8PB83_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8PB83_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 1.720e-6
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:   13 EIATPFYPVYMTAAAVAGARG-VVRVRVPRATLAVFGLPYNPRRATDPITADLVVDNGGMVTALRFV 210
            EI T F+PV    AA   A G +VRV +PR T+A FGLP N  RA + I AD+++   G+  A+R V
Sbjct:  189 EITTDFFPVTYDGAANLDAGGQIVRVELPRTTMASFGLPVNMERADEKIKADVLLGVDGLAHAIRLV 255
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BLAST of mRNA_P-wetherbeei_contig58026.1.1 vs. uniprot
Match: A0A2V8MF10_9BACT (Uncharacterized protein n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8MF10_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 2.210e-5
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:   13 EIATPFYPVYMTAAAVAGARG-VVRVRVPRATLAVFGLPYNPRRATDPITADLVVDNGGMVTALRFV 210
            EI T F PV   + A   A G +VRV +PR T+A FGLP N  R+ + I AD+++   G+  A+RFV
Sbjct:  187 EITTDFLPVTYGSMANLDAGGQIVRVELPRTTMANFGLPVNMERSDERIKADVLLGVDGLAHAIRFV 253
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58026.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V8QP50_9BACT9.050e-744.12Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A2V8PB83_9BACT1.720e-646.27Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A2V8MF10_9BACT2.210e-544.78Uncharacterized protein n=2 Tax=Acidobacteria bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58026contigP-wetherbeei_contig58026:1..216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size216
Hectar predicted targeting categoryother localisation
Exons1
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186860.1736832-CDS-P-wetherbeei_contig58026:0..2161683186860.1736832-CDS-P-wetherbeei_contig58026:0..216Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58026 1..216 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58026.1.1prot_P-wetherbeei_contig58026.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58026 1..216 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58026.1.1

>prot_P-wetherbeei_contig58026.1.1 ID=prot_P-wetherbeei_contig58026.1.1|Name=mRNA_P-wetherbeei_contig58026.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=72bp
VSHPEIATPFYPVYMTAAAVAGARGVVRVRVPRATLAVFGLPYNPRRATD
PITADLVVDNGGMVTALRFVQ*
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mRNA from alignment at P-wetherbeei_contig58026:1..216+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58026.1.1 ID=mRNA_P-wetherbeei_contig58026.1.1|Name=mRNA_P-wetherbeei_contig58026.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig58026:1..216+ (Phaeothamnion wetherbeei SAG_119_79)
GTCAGTCATCCCGAAATCGCCACACCTTTCTATCCGGTCTATATGACGGC
TGCGGCGGTGGCCGGTGCGCGCGGCGTGGTGCGGGTCAGGGTGCCACGCG
CCACGCTCGCGGTGTTCGGCCTGCCCTATAACCCGCGTCGCGCGACCGAT
CCGATTACCGCTGATCTGGTGGTCGACAATGGCGGCATGGTCACCGCGCT
GCGCTTTGTGCAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58026:1..216+

>mRNA_P-wetherbeei_contig58026.1.1 ID=mRNA_P-wetherbeei_contig58026.1.1|Name=mRNA_P-wetherbeei_contig58026.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig58026:1..216+ (Phaeothamnion wetherbeei SAG_119_79)
GTCAGTCATCCCGAAATCGCCACACCTTTCTATCCGGTCTATATGACGGC
TGCGGCGGTGGCCGGTGCGCGCGGCGTGGTGCGGGTCAGGGTGCCACGCG
CCACGCTCGCGGTGTTCGGCCTGCCCTATAACCCGCGTCGCGCGACCGAT
CCGATTACCGCTGATCTGGTGGTCGACAATGGCGGCATGGTCACCGCGCT
GCGCTTTGTGCAGTGA
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