mRNA_P-wetherbeei_contig5800.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5800.1.1
Unique NamemRNA_P-wetherbeei_contig5800.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5800.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5800contigP-wetherbeei_contig5800:935..2073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size320
Hectar predicted targeting categoryother localisation
Exons3
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186859.8659039-CDS-P-wetherbeei_contig5800:934..10501683186859.8659039-CDS-P-wetherbeei_contig5800:934..1050Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5800 935..1050 -
1683186859.8789942-CDS-P-wetherbeei_contig5800:1537..16891683186859.8789942-CDS-P-wetherbeei_contig5800:1537..1689Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5800 1538..1689 -
1683186859.890574-CDS-P-wetherbeei_contig5800:2023..20731683186859.890574-CDS-P-wetherbeei_contig5800:2023..2073Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5800 2024..2073 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5800.1.1prot_P-wetherbeei_contig5800.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5800 935..2073 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5800.1.1

>prot_P-wetherbeei_contig5800.1.1 ID=prot_P-wetherbeei_contig5800.1.1|Name=mRNA_P-wetherbeei_contig5800.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
MRYTADVGPDVYFPRGRVGDALPMYVGMDVWCSRGGMDMPSAVMAMLGDR
FAYYGTPVFNAYKMLAMGSVHRMTEFLYPSTVPVGVDWFSEERTIRHSYD
DVYQIL
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mRNA from alignment at P-wetherbeei_contig5800:935..2073-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5800.1.1 ID=mRNA_P-wetherbeei_contig5800.1.1|Name=mRNA_P-wetherbeei_contig5800.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1139bp|location=Sequence derived from alignment at P-wetherbeei_contig5800:935..2073- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGATACACTGCAGATGTCGGGCCTGACGTCTACTTCCCTCGCGGAAG
GTTAGTACGCGTTTGGCAGTGTGGCTGAATCCCTTTTTAGATTGATTCCC
TGTCTCCGTTTGGTAAAGCTGCTGCAGCTTGGTCATTCCCCCCCCTCTGT
TTCGAACAGTCTTTTCTACCCTTCTCGACAGAACCACTCATTCAGCCCTT
TTCACTTCTTTGTCCTTTATCTGTTACCGACTCTGCCGACACCACCGCCC
GCTGCCGCTACCGCCATCACAACCTCCACCACCTGCTTCCCCGCCGTCCC
TGCCTCCCGATTCCCCTGTTCATTGACCACGCATGGCGGCCGCGGCTCAC
CCGGTGGTCATCCGGCACTGTTTTGGGACGGTAGGGTCGGAGACGCGCTG
CCGATGTACGTCGGGATGGACGTGTGGTGCTCCCGCGGTGGCATGGACAT
GCCGTCGGCCGTCATGGCGATGCTCGGCGATCGTTTCGCCTACTACGGTA
CCCCCGTTTTCAACGCCTACAAGATGCTCGCCATGGGTCAGTCAGTTAAT
CAGTCAGTCAGTCAGTCTCTTTTTCCTGCTTCGGCGGGATCCTTTTATGA
GGTTAGGCTTGCTGCTGCCCTGTCGCTACAGACTCTATGGCGTTCCTTCG
GTCGCGGCATGTGACCGCTGGCTTTGTGGTTTCTTTCTCTTTTTGACACC
AGCCACAGGCGCCTGCGACAATCCAGCAACGGTTCGGTCCGCAAGTCTAT
TTTTTAAGAGGATCCCTCAAAAAGGGATTGGAGCCGTTGCCGAAAACACT
GCATATTCGCCGCATGATTCCTTCGTCCCTTTAATGCTGCAGTCCCCTCC
CTCCGGAGCCCTTCCTTTGTTTCCTCGGTGTCCGATTTGTTTCTGCCTGC
CTCACTCTCCATCCATCCCACTCTCCTTCCCGCTTCTCCTTCCCCTCTCG
CATCGTTGAACCTTTGCCGTTCGTATAACCGTCTTGGACACGGTCCGCTC
GGATGATACGCTGACCCGCACAGGTTCCGTGCACCGCATGACCGAGTTCC
TCTACCCGTCCACGGTGCCGGTCGGCGTCGACTGGTTCTCGGAGGAGCGC
ACGATCCGCCACAGCTACGACGACGTCTACCAAATTCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5800:935..2073-

>mRNA_P-wetherbeei_contig5800.1.1 ID=mRNA_P-wetherbeei_contig5800.1.1|Name=mRNA_P-wetherbeei_contig5800.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig5800:935..2073- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGATACACTGCAGATGTCGGGCCTGACGTCTACTTCCCTCGCGGAAG
GGTCGGAGACGCGCTGCCGATGTACGTCGGGATGGACGTGTGGTGCTCCC
GCGGTGGCATGGACATGCCGTCGGCCGTCATGGCGATGCTCGGCGATCGT
TTCGCCTACTACGGTACCCCCGTTTTCAACGCCTACAAGATGCTCGCCAT
GGGTTCCGTGCACCGCATGACCGAGTTCCTCTACCCGTCCACGGTGCCGG
TCGGCGTCGACTGGTTCTCGGAGGAGCGCACGATCCGCCACAGCTACGAC
GACGTCTACCAAATTCTG
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