mRNA_P-wetherbeei_contig58.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58.3.1
Unique NamemRNA_P-wetherbeei_contig58.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58.3.1 vs. uniprot
Match: A0A7S3XSC8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSC8_HETAK)

HSP 1 Score: 108 bits (269), Expect = 9.820e-25
Identity = 57/115 (49.57%), Postives = 70/115 (60.87%), Query Frame = 1
Query:   22 RPTARFVTDVTVPDGTVLAPSTPFVKTWRLSNEGSCAFGGPAADVRLVNVGGDXXXXXXEGVAVSDVQRPGAQFDVSLPLVAPARAGRYIGYWRMLSDGDTAWGHRLWVDIVVEE 366
            +P ARFV DVT+PDGT +AP   F KTW++ N+G+ AF    A  RLVNVGGD        V       PG +F + L L AP R GRYIGYWR+ +     +GHRLWVD+ V E
Sbjct:   87 KPMARFVADVTIPDGTEVAPGASFTKTWKMRNDGAVAF---PAGARLVNVGGDLMEGAPRPVGAHG---PGEEFALGLELQAPLRPGRYIGYWRLQAPEGHHFGHRLWVDVRVAE 195          
BLAST of mRNA_P-wetherbeei_contig58.3.1 vs. uniprot
Match: A0A6S9FPI1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FPI1_HETAK)

HSP 1 Score: 108 bits (269), Expect = 5.350e-24
Identity = 57/115 (49.57%), Postives = 70/115 (60.87%), Query Frame = 1
Query:   22 RPTARFVTDVTVPDGTVLAPSTPFVKTWRLSNEGSCAFGGPAADVRLVNVGGDXXXXXXEGVAVSDVQRPGAQFDVSLPLVAPARAGRYIGYWRMLSDGDTAWGHRLWVDIVVEE 366
            +P ARFV DVT+PDGT +AP   F KTW++ N+G+ AF    A  RLVNVGGD        V       PG +F + L L AP R GRYIGYWR+ +     +GHRLWVD+ V E
Sbjct:  268 KPMARFVADVTIPDGTEVAPGASFTKTWKMRNDGAVAF---PAGARLVNVGGDLMEGAPRPVGAHG---PGEEFALGLELQAPLRPGRYIGYWRLQAPEGHHFGHRLWVDVRVAE 376          
BLAST of mRNA_P-wetherbeei_contig58.3.1 vs. uniprot
Match: A0A7S4D636_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D636_HETAK)

HSP 1 Score: 108 bits (269), Expect = 7.680e-24
Identity = 57/115 (49.57%), Postives = 70/115 (60.87%), Query Frame = 1
Query:   22 RPTARFVTDVTVPDGTVLAPSTPFVKTWRLSNEGSCAFGGPAADVRLVNVGGDXXXXXXEGVAVSDVQRPGAQFDVSLPLVAPARAGRYIGYWRMLSDGDTAWGHRLWVDIVVEE 366
            +P ARFV DVT+PDGT +AP   F KTW++ N+G+ AF    A  RLVNVGGD        V       PG +F + L L AP R GRYIGYWR+ +     +GHRLWVD+ V E
Sbjct:  477 KPMARFVADVTIPDGTEVAPGASFTKTWKMRNDGAVAF---PAGARLVNVGGDLMEGAPRPVGAHG---PGEEFALGLELQAPLRPGRYIGYWRLQAPEGHHFGHRLWVDVRVAE 585          
BLAST of mRNA_P-wetherbeei_contig58.3.1 vs. uniprot
Match: D7FT16_ECTSI (N_BRCA1_IG domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT16_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 3.090e-23
Identity = 54/114 (47.37%), Postives = 74/114 (64.91%), Query Frame = 1
Query:   19 ARPTARFVTDVTVPDGTVLAPSTPFVKTWRLSNEGSCAFGGPAADVRLVNVGGDXXXXXXEGVAVSDVQRPGAQFDVSLPLVAPARAGRYIGYWRMLSDGDTAWGHRLWVDIVV 360
            A+P ARFVTDV+V DG+ L P+T FVKTW + N+G   F    +  ++V VGGD      +GVAV   + PG +F VS+PL  P  +GRYIGYWR+ +     +GHR+W D++V
Sbjct:  292 AKPMARFVTDVSVADGSPLPPNTRFVKTWCMRNDGPVTF---PSGCKIVPVGGDLMAGPEDGVAVEQ-RGPGEEFHVSVPLTTPPLSGRYIGYWRLRTAEGQKFGHRVWADVLV 401          
BLAST of mRNA_P-wetherbeei_contig58.3.1 vs. uniprot
Match: A0A2R5G144_9STRA (Next to BRCA1 1 protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G144_9STRA)

HSP 1 Score: 105 bits (262), Expect = 6.690e-23
Identity = 60/125 (48.00%), Postives = 79/125 (63.20%), Query Frame = 1
Query:    4 PAWARARPTARFVTDVTVPDGTVLAPSTPFVKTWRLSNEGSCAFGGPAAD------VRLVNVGGDXXXXXXEGVAVSDVQRPGAQFDVSLPLVAPARAGRYIGYWRMLSDGDTAWGHRLWVDIVV 360
            P  + ARP A+F+ D++VPDGTVL     FVKTWR++N        P+AD      VRLV VGG       EGV V+ ++   A  D+S+ LVAPA +GRY+GYWR++S G   +GHRLW+DI V
Sbjct:  601 PLPSAARPLAKFLADMSVPDGTVLPAGKRFVKTWRIAN--------PSADQAWPDDVRLVCVGGSRMEGPDEGVPVAQLREQSAA-DLSVELVAPAESGRYVGYWRLMSGGQR-FGHRLWIDITV 715          
BLAST of mRNA_P-wetherbeei_contig58.3.1 vs. uniprot
Match: G4ZKF8_PHYSP (UBA domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZKF8_PHYSP)

HSP 1 Score: 102 bits (255), Expect = 1.080e-22
Identity = 79/186 (42.47%), Postives = 96/186 (51.61%), Query Frame = 1
Query:   31 ARFVTDVTVPDGTVLAPSTPFVKTWRLSNEGSCAFGGP---AADVRLVNVGGDXXXXXXEGVAVSDVQRPGAQFDVSLPLVAPARAGRYIGYWRMLSDGDTAWGHRLWVDIVVEESPETAAAAAAREEHDVDSFGPDAGSGAASPPDAGAQSGKSPAATEDDWSAELSLLANMGFDDMDRILQLLT 579
            A F  DVT PDGTVLAP  PF K W+L N      GGP        L+ VGGD      E V +  V  PG   DVSL +VAPA+ GRY GYWR+ +     +G RLWVDI V E  E A  A   +E  VD+      +  AS       +  +    E  W+ +L  LA+MGF DMDR + LLT
Sbjct:  157 AVFEGDVTCPDGTVLAPGEPFDKVWKLRN------GGPNKWPIGAELLCVGGDKMQAP-ESVLIPSVL-PGKSIDVSLRMVAPAKPGRYTGYWRLSTPDGNRFGQRLWVDINVMEPKEPATVAVETKEVRVDAPAAVVSTAGASVNVXXXXAVLTNNDEELRWTNQLQALADMGFTDMDRNVALLT 334          
BLAST of mRNA_P-wetherbeei_contig58.3.1 vs. uniprot
Match: D8TCN6_SELML (N_BRCA1_IG domain-containing protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8TCN6_SELML)

HSP 1 Score: 99.4 bits (246), Expect = 3.470e-22
Identity = 57/122 (46.72%), Postives = 73/122 (59.84%), Query Frame = 1
Query:   13 ARARPTARFVTDVTVPDGTVLAPSTPFVKTWRLSNEGSCAFGGPAADVRLVNVGGDXXXXXX------EGVAVSDVQRPGAQFDVSLPLVAPARAGRYIGYWRMLSDGDTAWGHRLWVDIVV 360
            A A+P  RFV DV++PDGT ++P T FVK WRL N G  A+   A D RLV VGGD            EG +V     P A+ +V++ LVAPARAGRY  YWR+++     +GHR+W  I V
Sbjct:    2 AYAKPDGRFVCDVSIPDGTEVSPHTRFVKIWRLRNSGKVAW---APDTRLVRVGGDEMGTVSAVSLQTEGASVL----PDAEVEVAVDLVAPARAGRYASYWRLVTPYGVKFGHRVWALIQV 116          
BLAST of mRNA_P-wetherbeei_contig58.3.1 vs. uniprot
Match: A0A8K1C4U1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4U1_PYTOL)

HSP 1 Score: 99.8 bits (247), Expect = 4.130e-21
Identity = 55/111 (49.55%), Postives = 70/111 (63.06%), Query Frame = 1
Query:   28 TARFVTDVTVPDGTVLAPSTPFVKTWRLSNEGSCAFGGPAADVRLVNVGGDXXXXXXEGVAVSDVQRPGAQFDVSLPLVAPARAGRYIGYWRMLSDGDTAWGHRLWVDIVV 360
            TA F  DVT PDGTVLAP+ PF K WR+ N GS  +       +L  VGGD      + V +  VQ PG+  DVSL ++AP++AGRY GYWR+ +D  T +G R+WVDI V
Sbjct:  267 TAVFEDDVTCPDGTVLAPAQPFDKVWRIRNGGSTKW---PVGCKLFCVGGDRMQAP-DSVLIPSVQ-PGSTIDVSLRMIAPSKAGRYTGYWRLSTDDGTRFGQRMWVDINV 372          
BLAST of mRNA_P-wetherbeei_contig58.3.1 vs. uniprot
Match: UPI000D1C5FB9 (protein NBR1 homolog isoform X1 n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C5FB9)

HSP 1 Score: 99.4 bits (246), Expect = 8.810e-21
Identity = 57/122 (46.72%), Postives = 73/122 (59.84%), Query Frame = 1
Query:   13 ARARPTARFVTDVTVPDGTVLAPSTPFVKTWRLSNEGSCAFGGPAADVRLVNVGGDXXXXXX------EGVAVSDVQRPGAQFDVSLPLVAPARAGRYIGYWRMLSDGDTAWGHRLWVDIVV 360
            A A+P  RFV DV++PDGT ++P T FVK WRL N G  A+   A D RLV VGGD            EG +V     P A+ +V++ LVAPARAGRY  YWR+++     +GHR+W  I V
Sbjct:  300 AYAKPDGRFVCDVSIPDGTEVSPHTRFVKIWRLRNSGKVAW---APDTRLVRVGGDEMGTVSAVSLQTEGASVL----PDAEVEVAVDLVAPARAGRYASYWRLVTPYGVKFGHRVWALIQV 414          
BLAST of mRNA_P-wetherbeei_contig58.3.1 vs. uniprot
Match: A0A7S2W6Y7_9STRA (Hypothetical protein (Fragment) n=3 Tax=Sar TaxID=2698737 RepID=A0A7S2W6Y7_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.240e-20
Identity = 52/116 (44.83%), Postives = 74/116 (63.79%), Query Frame = 1
Query:   19 ARPTARFVTDVTVPDGTVLAPSTPFVKTWRLSNEGSCAFGGPAADVRLVNVGGDXXXXXXEGVAVSDVQRPGAQFDVSLPLVAPARAGRYIGYWRMLSDGDTAWGHRLWVDIVVEE 366
            ARP A+FV D+++PDG+++  +   +KTWR+SN G   +      VRLV VGG+       G+ V  +    A+ D+SL LVAP R GRY+GYWR+++     +GHRLWVDI V+E
Sbjct:  557 ARPQAKFVADLSLPDGSLVDANNHVLKTWRISNSGRQDW---PEGVRLVCVGGERMSGPLNGLEVPPLPLS-AELDLSLGLVAPERPGRYVGYWRLMTGNQERFGHRLWVDITVKE 668          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XSC8_HETAK9.820e-2549.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6S9FPI1_HETAK5.350e-2449.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4D636_HETAK7.680e-2449.57Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
D7FT16_ECTSI3.090e-2347.37N_BRCA1_IG domain-containing protein n=1 Tax=Ectoc... [more]
A0A2R5G144_9STRA6.690e-2348.00Next to BRCA1 1 protein n=1 Tax=Hondaea fermentalg... [more]
G4ZKF8_PHYSP1.080e-2242.47UBA domain-containing protein n=1 Tax=Phytophthora... [more]
D8TCN6_SELML3.470e-2246.72N_BRCA1_IG domain-containing protein n=1 Tax=Selag... [more]
A0A8K1C4U1_PYTOL4.130e-2149.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI000D1C5FB98.810e-2146.72protein NBR1 homolog isoform X1 n=4 Tax=Selaginell... [more]
A0A7S2W6Y7_9STRA1.240e-2044.83Hypothetical protein (Fragment) n=3 Tax=Sar TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58contigP-wetherbeei_contig58:10780..11751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo156057
PFAMsN_BRCA1_IG,PB1
Model size579
Max annot lvl4776|Peronosporales
KEGG koko:K17987
KEGG Pathwayko04137,map04137
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.62e-25
EggNOG OGsKOG4351@1|root,KOG4351@2759|Eukaryota,3Q8PI@4776|Peronosporales
DescriptionIg-like domain from next to BRCA1 gene
Cds size579
COG categoryS
BRITEko00000,ko00001,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186859.5526328-CDS-P-wetherbeei_contig58:10779..111961683186859.5526328-CDS-P-wetherbeei_contig58:10779..11196Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58 10780..11196 +
1683186859.5640113-CDS-P-wetherbeei_contig58:11589..117511683186859.5640113-CDS-P-wetherbeei_contig58:11589..11751Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58 11590..11751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58.3.1prot_P-wetherbeei_contig58.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58 10780..11751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58.3.1

>prot_P-wetherbeei_contig58.3.1 ID=prot_P-wetherbeei_contig58.3.1|Name=mRNA_P-wetherbeei_contig58.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=193bp
MPAWARARPTARFVTDVTVPDGTVLAPSTPFVKTWRLSNEGSCAFGGPAA
DVRLVNVGGDLMGGPAEGVAVSDVQRPGAQFDVSLPLVAPARAGRYIGYW
RMLSDGDTAWGHRLWVDIVVEESPETAAAAAAREEHDVDSFGPDAGSGAA
SPPDAGAQSGKSPAATEDDWSAELSLLANMGFDDMDRILQLLT
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mRNA from alignment at P-wetherbeei_contig58:10780..11751+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58.3.1 ID=mRNA_P-wetherbeei_contig58.3.1|Name=mRNA_P-wetherbeei_contig58.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=972bp|location=Sequence derived from alignment at P-wetherbeei_contig58:10780..11751+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCGCGTGGGCCCGCGCCCGGCCGACGGCGCGCTTCGTGACGGATGT GACGGTGCCGGACGGTACGGTGCTGGCGCCCTCGACGCCTTTCGTCAAGA CGTGGCGCCTCAGCAACGAGGGCAGTTGTGCCTTCGGCGGACCCGCCGCC GACGTTCGCCTCGTGAACGTCGGTGGCGACCTCATGGGCGGCCCCGCCGA GGGCGTGGCAGTTTCAGACGTACAGCGGCCGGGCGCTCAGTTCGACGTGT CGTTGCCACTTGTGGCACCGGCGCGCGCCGGGCGCTACATCGGCTACTGG CGCATGCTCAGCGACGGCGACACGGCCTGGGGCCACCGCCTGTGGGTCGA CATTGTCGTGGAGGAGTCGCCGGAGACTGCGGCGGCAGCAGCCGCAAGGG AGGAGCACGACGTGGATGTCTTCACGAGCCGTGACGGCGACTGGGCGGTC GTTAGTGTCCTTCGCGGCGGCCAGGACTCGCGCGACGCCGGTCCCACCGC CGCGGCAGCGGCGGAGATCGCAGCGCCTGAAGACGGCGAGGCGGCATCGG CTGCCGCGGCGGCGGAGACCGCCACAGCCTTCGACGTGGTTCGGCCCCCG CCGTTGGGCCGCAGCCTGCCGCTCTCCCCGGAGCTTCTCTCCATCCGCAC CATGTGCTCGGCCGACGACTCTGACGCCGCGGAGCGCGGGATGTCATCTG CAGCCTTGACTGCCTCTTTTGGTCAGGCGTCGGCGACTGCCGCATCGCCG ACGGCGGCTGTAGCCACGGCTGCACAGCAGCCGCTGCGTCAGGGCCTCCT TTCGTTCAAGTCGTTCGGGCCGGACGCCGGCTCGGGCGCCGCCTCCCCCC CTGATGCCGGGGCCCAGAGCGGCAAAAGCCCTGCCGCCACCGAGGACGAC TGGTCGGCGGAACTGTCGCTGCTGGCGAACATGGGCTTCGATGACATGGA CCGCATTCTGCAGCTGCTGACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58:10780..11751+

>mRNA_P-wetherbeei_contig58.3.1 ID=mRNA_P-wetherbeei_contig58.3.1|Name=mRNA_P-wetherbeei_contig58.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=579bp|location=Sequence derived from alignment at P-wetherbeei_contig58:10780..11751+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCGCGTGGGCCCGCGCCCGGCCGACGGCGCGCTTCGTGACGGATGT
GACGGTGCCGGACGGTACGGTGCTGGCGCCCTCGACGCCTTTCGTCAAGA
CGTGGCGCCTCAGCAACGAGGGCAGTTGTGCCTTCGGCGGACCCGCCGCC
GACGTTCGCCTCGTGAACGTCGGTGGCGACCTCATGGGCGGCCCCGCCGA
GGGCGTGGCAGTTTCAGACGTACAGCGGCCGGGCGCTCAGTTCGACGTGT
CGTTGCCACTTGTGGCACCGGCGCGCGCCGGGCGCTACATCGGCTACTGG
CGCATGCTCAGCGACGGCGACACGGCCTGGGGCCACCGCCTGTGGGTCGA
CATTGTCGTGGAGGAGTCGCCGGAGACTGCGGCGGCAGCAGCCGCAAGGG
AGGAGCACGACGTGGATTCGTTCGGGCCGGACGCCGGCTCGGGCGCCGCC
TCCCCCCCTGATGCCGGGGCCCAGAGCGGCAAAAGCCCTGCCGCCACCGA
GGACGACTGGTCGGCGGAACTGTCGCTGCTGGCGAACATGGGCTTCGATG
ACATGGACCGCATTCTGCAGCTGCTGACG
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