mRNA_P-wetherbeei_contig57992.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig57992.1.1
Unique Name	mRNA_P-wetherbeei_contig57992.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig57992.1.1 vs. uniprot
Match: A0A2D9H7G4_9ACTN (Uncharacterized protein n=1 Tax=Nocardioides sp. TaxID=35761 RepID=A0A2D9H7G4_9ACTN)

HSP 1 Score: 337 bits (863), Expect = 7.210e-116
Identity = 163/168 (97.02%), Postives = 165/168 (98.21%), Query Frame = 1

Query:    1 SMAADALLDRLRPSGTLEGGGSAPQEGCWINYNRKSVWLEDHSGYAEAMKEAGTDKDAWRRIRPKVVLKATWAEVAAYGATLPQELRTELDTLRRTERDESRSWSEFSDARGGWPWRRRFDSDEEHQEAQAEWDEVYGKHLVALRDVWDRQKAAISRALPLTVDDEPV 504
            SMAADALLDRLR  GTLEGG SAPQEGCWINYNRKSVWLEDHSGY+EAMKEAGTDKDAWRRIRPKVVLKATWAEVAAYGATLPQELRTELDTLRRTERDESRSWSEFSDARGGWPWRRRFDSDEEHQEAQAEWDEVYGKHLVALRD+WDRQKAAISRALPLTVDDEPV
Sbjct:   16 SMAADALLDRLRERGTLEGGRSAPQEGCWINYNRKSVWLEDHSGYSEAMKEAGTDKDAWRRIRPKVVLKATWAEVAAYGATLPQELRTELDTLRRTERDESRSWSEFSDARGGWPWRRRFDSDEEHQEAQAEWDEVYGKHLVALRDMWDRQKAAISRALPLTVDDEPV 183

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BLAST of mRNA_P-wetherbeei_contig57992.1.1 vs. uniprot
Match: A0A0Q9RWT2_9ACTN (Uncharacterized protein n=4 Tax=Nocardioides TaxID=1839 RepID=A0A0Q9RWT2_9ACTN)

HSP 1 Score: 306 bits (784), Expect = 6.990e-104
Identity = 147/168 (87.50%), Postives = 155/168 (92.26%), Query Frame = 1

Query:    1 SMAADALLDRLRPSGTLEGGGSAPQEGCWINYNRKSVWLEDHSGYAEAMKEAGTDKDAWRRIRPKVVLKATWAEVAAYGATLPQELRTELDTLRRTERDESRSWSEFSDARGGWPWRRRFDSDEEHQEAQAEWDEVYGKHLVALRDVWDRQKAAISRALPLTVDDEPV 504
            +MAADALLDRLR  GTLEGG SAPQEGCWINYNRK+VWLEDHSG++EAMK AGTD  AWRRIRP VVLK TWAE A YGATLPQELRTELDTLRR ER+E+RSWSEFSDARGGWPWRRRFDSDEEHQEAQAEWDE YGKHLVALRDV DRQKAAI+RALPLT+DDEPV
Sbjct:   16 AMAADALLDRLRERGTLEGGRSAPQEGCWINYNRKAVWLEDHSGFSEAMKAAGTDAKAWRRIRPTVVLKVTWAEAAEYGATLPQELRTELDTLRRNEREENRSWSEFSDARGGWPWRRRFDSDEEHQEAQAEWDEAYGKHLVALRDVRDRQKAAIARALPLTIDDEPV 183

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BLAST of mRNA_P-wetherbeei_contig57992.1.1 vs. uniprot
Match: A0A7Z0CRG1_9ACTN (Uncharacterized protein n=1 Tax=Nocardioides aromaticivorans TaxID=200618 RepID=A0A7Z0CRG1_9ACTN)

HSP 1 Score: 303 bits (775), Expect = 3.030e-102
Identity = 143/167 (85.63%), Postives = 156/167 (93.41%), Query Frame = 1

Query:    4 MAADALLDRLRPSGTLEGGGSAPQEGCWINYNRKSVWLEDHSGYAEAMKEAGTDKDAWRRIRPKVVLKATWAEVAAYGATLPQELRTELDTLRRTERDESRSWSEFSDARGGWPWRRRFDSDEEHQEAQAEWDEVYGKHLVALRDVWDRQKAAISRALPLTVDDEPV 504
            MAADALLDRLR  GTLEGG SAPQ+GCWI+YNRK+VWLEDHSG++EAMK AG+DK AWRRIRPKVVLK TWAE AAYG +LPQ++RTELDTLRRTER E+R WSEFSDARGGWPWRRRFDSDEEHQEAQAEWD+VYG+HLVALRDVW RQKAAI+RALPLTVDDEPV
Sbjct:   17 MAADALLDRLRDRGTLEGGRSAPQDGCWISYNRKAVWLEDHSGFSEAMKAAGSDKQAWRRIRPKVVLKVTWAEAAAYGTSLPQDVRTELDTLRRTERAENRRWSEFSDARGGWPWRRRFDSDEEHQEAQAEWDKVYGRHLVALRDVWARQKAAIARALPLTVDDEPV 183

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BLAST of mRNA_P-wetherbeei_contig57992.1.1 vs. uniprot
Match: R7XS66_9ACTN (Uncharacterized protein n=1 Tax=Nocardioides sp. CF8 TaxID=110319 RepID=R7XS66_9ACTN)

HSP 1 Score: 285 bits (728), Expect = 2.770e-95
Identity = 139/172 (80.81%), Postives = 150/172 (87.21%), Query Frame = 1

Query:    4 MAADALLDRLRPSGTLEGGGSAPQEGCWINYNRKSVWLEDHSGYAEAMKEAGTD-----KDAWRRIRPKVVLKATWAEVAAYGATLPQELRTELDTLRRTERDESRSWSEFSDARGGWPWRRRFDSDEEHQEAQAEWDEVYGKHLVALRDVWDRQKAAISRALPLTVDDEPV 504
            MAADALLDRLR  GTLEGG SAPQEGCWINYNRK+VWLEDHS ++ A++ AG D       AWRRIRPKVVLK TWAE AAYGA+LP+ELRTELD LRRTERDE+RSWSEFSD RGGWP RRRFDSDEEHQ  QAEWD+ YG+HLVALRDVWDRQKAAI+RALPLTVDDEPV
Sbjct:   17 MAADALLDRLRDRGTLEGGCSAPQEGCWINYNRKAVWLEDHSEFSAALRAAGDDGATNTAQAWRRIRPKVVLKVTWAEAAAYGASLPKELRTELDALRRTERDETRSWSEFSDERGGWPHRRRFDSDEEHQVVQAEWDDTYGRHLVALRDVWDRQKAAIARALPLTVDDEPV 188

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BLAST of mRNA_P-wetherbeei_contig57992.1.1 vs. uniprot
Match: A1RCF3_PAEAT (Uncharacterized protein n=1 Tax=Paenarthrobacter aurescens (strain TC1) TaxID=290340 RepID=A1RCF3_PAEAT)

HSP 1 Score: 275 bits (703), Expect = 2.080e-91
Identity = 136/173 (78.61%), Postives = 147/173 (84.97%), Query Frame = 1

Query:    1 SMAADALLDRLRPSGTLEGGGSAPQEGCWINYNRKSVWLEDHSGYAEA-MKEAGT-----DKDAWRRIRPKVVLKATWAEVAAYGATLPQELRTELDTLRRTERDESRSWSEFSDARGGWPWRRRFDSDEEHQEAQAEWDEVYGKHLVALRDVWDRQKAAISRALPLTVDDEP 501
            +MAADALLDRLR  GTLEGG SAPQ+GCWI+YNRK+VWLEDHS ++EA ++EAG         AWRR RPKVVLK TWAE AAYGA LPQ LR ELDTLRRTERDE+RSWS FSDARGGWPWRRRF+SDEEHQ AQAEWDE YG HL ALR VWDRQKAAI+RALPLTVDDEP
Sbjct:   16 AMAADALLDRLRERGTLEGGRSAPQDGCWISYNRKAVWLEDHSQFSEAALREAGDAGAAGTAQAWRRTRPKVVLKVTWAEAAAYGAALPQPLREELDTLRRTERDENRSWSGFSDARGGWPWRRRFESDEEHQVAQAEWDEAYGNHLAALRKVWDRQKAAIARALPLTVDDEP 188

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BLAST of mRNA_P-wetherbeei_contig57992.1.1 vs. uniprot
Match: A1SBV4_NOCSJ (Uncharacterized protein n=1 Tax=Nocardioides sp. (strain ATCC BAA-499 / JS614) TaxID=196162 RepID=A1SBV4_NOCSJ)

HSP 1 Score: 273 bits (699), Expect = 8.180e-91
Identity = 132/172 (76.74%), Postives = 145/172 (84.30%), Query Frame = 1

Query:    4 MAADALLDRLRPSGTLEGGGSAPQEGCWINYNRKSVWLEDHSGYAEAMKEAGTDK-----DAWRRIRPKVVLKATWAEVAAYGATLPQELRTELDTLRRTERDESRSWSEFSDARGGWPWRRRFDSDEEHQEAQAEWDEVYGKHLVALRDVWDRQKAAISRALPLTVDDEPV 504
            M ADALLDRLR  GTLEGG SAPQ+GCWINYNRK+VWLEDHS ++ A++ A          AWRRIRPKVVLK TWAE AAYG  LPQELRTELDTLRRTERDE+R WSEFSD RGGWPWRRR+ +DEEH+ A+ EWD VYGKHLVALR+VWDRQKAAI+RALPLTVDDEPV
Sbjct:   17 MTADALLDRLRERGTLEGGRSAPQDGCWINYNRKAVWLEDHSEFSAALRAAADASAADATQAWRRIRPKVVLKVTWAEAAAYGTRLPQELRTELDTLRRTERDENRIWSEFSDERGGWPWRRRYATDEEHKAAETEWDAVYGKHLVALREVWDRQKAAIARALPLTVDDEPV 188

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BLAST of mRNA_P-wetherbeei_contig57992.1.1 vs. uniprot
Match: A0A1V1W388_9ACTN (Uncharacterized protein n=1 Tax=Nocardioides sp. PD653 TaxID=393303 RepID=A0A1V1W388_9ACTN)

HSP 1 Score: 243 bits (619), Expect = 1.300e-78
Identity = 110/167 (65.87%), Postives = 134/167 (80.24%), Query Frame = 1

Query:    4 MAADALLDRLRPSGTLEGGGSAPQEGCWINYNRKSVWLEDHSGYAEAMKEAGTDKDAWRRIRPKVVLKATWAEVAAYGATLPQELRTELDTLRRTERDESRSWSEFSDARGGWPWRRRFDSDEEHQEAQAEWDEVYGKHLVALRDVWDRQKAAISRALPLTVDDEPV 504
            +A+ ALLD++R  G  EGG SAPQ GCWI YN K++WLEDHS ++EA+K AGTDK+AWRRIRP++V K +WA VAA+G  LP  LR EL+TL RTERDE R WSEFSDARGGWP RRRF +D EH  AQAEWD+ Y +HL  LRD+WD++K A+ RALPL++DDEPV
Sbjct:   17 LASAALLDKIRTRGLFEGGCSAPQPGCWIGYNTKAIWLEDHSEFSEAIKAAGTDKEAWRRIRPRIVTKVSWAAVAAHGTALPPGLRGELETLHRTERDEERHWSEFSDARGGWPHRRRFPTDAEHAAAQAEWDQAYNRHLAVLRDIWDQRKTAVGRALPLSMDDEPV 183

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BLAST of mRNA_P-wetherbeei_contig57992.1.1 vs. uniprot
Match: A0A3D0S3B1_9ACTN (Uncharacterized protein n=1 Tax=Nocardioides sp. TaxID=35761 RepID=A0A3D0S3B1_9ACTN)

HSP 1 Score: 223 bits (569), Expect = 4.070e-71
Identity = 111/170 (65.29%), Postives = 131/170 (77.06%), Query Frame = 1

Query:    7 AADALLDRLRPSGTLEGGGSAPQEGCWINYNRKSVWLEDHSGYAEAMKEAGTDK-----DAWRRIRPKVVLKATWAEVAAYGATLPQELRTELDTLRRTERDESRSWSEFSDARGGWPWRRRFDSDEEHQEAQAEWDEVYGKHLVALRDVWDRQKAAISRALPLTVDDEP 501
            AADALLDR+R  GT EGG SAPQ GCWINYNRK+V LEDH+    A++EAGT+        WRR++P VV+  TWAE AAYGA+LP +LR EL  L R ERDE+R+W ++S+ RGGWP RRRF SD+EHQ  QAEWD VYGKH+ AL D+ DRQKAAI+RALPL VDDEP
Sbjct:   18 AADALLDRIRDRGTFEGGRSAPQPGCWINYNRKAVRLEDHTEIYAALREAGTESATEGTQPWRRMKPTVVVTVTWAEAAAYGASLPPDLRDELAQLVRAERDENRTWWDYSNERGGWPHRRRFSSDDEHQIVQAEWDAVYGKHIRALSDLRDRQKAAIARALPLIVDDEP 187

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BLAST of mRNA_P-wetherbeei_contig57992.1.1 vs. uniprot
Match: A0A1V1W0F8_9ACTN (Uncharacterized protein n=2 Tax=Nocardioides TaxID=1839 RepID=A0A1V1W0F8_9ACTN)

HSP 1 Score: 169 bits (429), Expect = 6.130e-51
Identity = 79/101 (78.22%), Postives = 89/101 (88.12%), Query Frame = 1

Query:  202 LKATWAEVAAYGATLPQELRTELDTLRRTERDESRSWSEFSDARGGWPWRRRFDSDEEHQEAQAEWDEVYGKHLVALRDVWDRQKAAISRALPLTVDDEPV 504
            +K TWA  AAYGA+LPQ LRTE++TLRR ERDE+R+WSEFS ARGGWPWRRRFDSDEEHQ AQAEWDE Y KHLVALR+VW+ Q+ AI+RALPLTV DEPV
Sbjct:    1 MKVTWAGAAAYGASLPQALRTEMETLRRIERDENRNWSEFSGARGGWPWRRRFDSDEEHQVAQAEWDETYDKHLVALREVWEHQRVAIARALPLTVSDEPV 101

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BLAST of mRNA_P-wetherbeei_contig57992.1.1 vs. uniprot
Match: UPI0019105DD0 (hypothetical protein n=1 Tax=Nocardioides sp. Root140 TaxID=1736460 RepID=UPI0019105DD0)

HSP 1 Score: 149 bits (375), Expect = 1.280e-43
Identity = 67/83 (80.72%), Postives = 75/83 (90.36%), Query Frame = 1

Query:    4 MAADALLDRLRPSGTLEGGGSAPQEGCWINYNRKSVWLEDHSGYAEAMKEAGTDKDAWRRIRPKVVLKATWAEVAAYGATLPQ 252
            MA DALLDRLR  GTLEGG SAPQ+GCWINYNRK+VWLEDHSG++EA++ AGTDK+AWRRIRPKVVLK TW+E AAYGA LPQ
Sbjct:    1 MATDALLDRLRERGTLEGGRSAPQDGCWINYNRKAVWLEDHSGFSEAIRAAGTDKEAWRRIRPKVVLKVTWSEAAAYGARLPQ 83

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig57992.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig57992.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14


Match Name	E-value	Identity	Description
A0A2D9H7G4_9ACTN	7.210e-116	97.02	Uncharacterized protein n=1 Tax=Nocardioides sp. T...	[more]
A0A0Q9RWT2_9ACTN	6.990e-104	87.50	Uncharacterized protein n=4 Tax=Nocardioides TaxID...	[more]
A0A7Z0CRG1_9ACTN	3.030e-102	85.63	Uncharacterized protein n=1 Tax=Nocardioides aroma...	[more]
R7XS66_9ACTN	2.770e-95	80.81	Uncharacterized protein n=1 Tax=Nocardioides sp. C...	[more]
A1RCF3_PAEAT	2.080e-91	78.61	Uncharacterized protein n=1 Tax=Paenarthrobacter a...	[more]
A1SBV4_NOCSJ	8.180e-91	76.74	Uncharacterized protein n=1 Tax=Nocardioides sp. (...	[more]
A0A1V1W388_9ACTN	1.300e-78	65.87	Uncharacterized protein n=1 Tax=Nocardioides sp. P...	[more]
A0A3D0S3B1_9ACTN	4.070e-71	65.29	Uncharacterized protein n=1 Tax=Nocardioides sp. T...	[more]
A0A1V1W0F8_9ACTN	6.130e-51	78.22	Uncharacterized protein n=2 Tax=Nocardioides TaxID...	[more]
UPI0019105DD0	1.280e-43	80.72	hypothetical protein n=1 Tax=Nocardioides sp. Root...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig57992	contig	P-wetherbeei_contig57992:3..506 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	504
Hectar predicted targeting category	other localisation
Exons	1
Cds size	501

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186859.471286-UTR-P-wetherbeei_contig57992:2..5	1683186859.471286-UTR-P-wetherbeei_contig57992:2..5	Phaeothamnion wetherbeei SAG_119_79	UTR	P-wetherbeei_contig57992 3..5 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186859.4834495-CDS-P-wetherbeei_contig57992:5..506	1683186859.4834495-CDS-P-wetherbeei_contig57992:5..506	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig57992 6..506 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig57992.1.1	prot_P-wetherbeei_contig57992.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig57992 6..506 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig57992:3..506+
coding sequence from alignment at P-wetherbeei_contig57992:3..506+

protein sequence of mRNA_P-wetherbeei_contig57992.1.1

>prot_P-wetherbeei_contig57992.1.1 ID=prot_P-wetherbeei_contig57992.1.1|Name=mRNA_P-wetherbeei_contig57992.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
MAADALLDRLRPSGTLEGGGSAPQEGCWINYNRKSVWLEDHSGYAEAMKE
AGTDKDAWRRIRPKVVLKATWAEVAAYGATLPQELRTELDTLRRTERDES
RSWSEFSDARGGWPWRRRFDSDEEHQEAQAEWDEVYGKHLVALRDVWDRQ
KAAISRALPLTVDDEPV

mRNA from alignment at P-wetherbeei_contig57992:3..506+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig57992.1.1 ID=mRNA_P-wetherbeei_contig57992.1.1|Name=mRNA_P-wetherbeei_contig57992.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig57992:3..506+ (Phaeothamnion wetherbeei SAG_119_79)
TCAATGGCTGCCGACGCTCTCCTCGATCGTCTCCGCCCGAGCGGGACACT
GGAAGGTGGCGGATCAGCACCGCAGGAAGGCTGCTGGATCAATTACAACC
GCAAGTCGGTCTGGCTCGAAGACCACTCGGGGTACGCCGAGGCGATGAAG
GAGGCCGGCACCGACAAGGACGCCTGGCGCCGGATCAGGCCGAAGGTCGT
GTTGAAGGCGACCTGGGCCGAGGTCGCGGCGTACGGCGCGACGCTGCCGC
AGGAGTTGCGGACCGAGCTGGACACACTGCGGCGCACCGAACGCGACGAG
AGCCGCAGCTGGAGCGAGTTCAGCGATGCTCGCGGCGGCTGGCCCTGGCG
TAGACGCTTCGACTCCGACGAGGAGCACCAAGAGGCTCAGGCCGAGTGGG
ACGAGGTCTACGGCAAGCACCTCGTCGCACTGCGTGACGTTTGGGACCGC
CAGAAGGCGGCGATCTCGCGCGCGCTTCCGCTCACCGTCGATGACGAACC
CGTG

Coding sequence (CDS) from alignment at P-wetherbeei_contig57992:3..506+

>mRNA_P-wetherbeei_contig57992.1.1 ID=mRNA_P-wetherbeei_contig57992.1.1|Name=mRNA_P-wetherbeei_contig57992.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig57992:3..506+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGCCGACGCTCTCCTCGATCGTCTCCGCCCGAGCGGGACACTGGA
AGGTGGCGGATCAGCACCGCAGGAAGGCTGCTGGATCAATTACAACCGCA
AGTCGGTCTGGCTCGAAGACCACTCGGGGTACGCCGAGGCGATGAAGGAG
GCCGGCACCGACAAGGACGCCTGGCGCCGGATCAGGCCGAAGGTCGTGTT
GAAGGCGACCTGGGCCGAGGTCGCGGCGTACGGCGCGACGCTGCCGCAGG
AGTTGCGGACCGAGCTGGACACACTGCGGCGCACCGAACGCGACGAGAGC
CGCAGCTGGAGCGAGTTCAGCGATGCTCGCGGCGGCTGGCCCTGGCGTAG
ACGCTTCGACTCCGACGAGGAGCACCAAGAGGCTCAGGCCGAGTGGGACG
AGGTCTACGGCAAGCACCTCGTCGCACTGCGTGACGTTTGGGACCGCCAG
AAGGCGGCGATCTCGCGCGCGCTTCCGCTCACCGTCGATGACGAACCCGT
G