mRNA_P-wetherbeei_contig57991.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57991.1.1
Unique NamemRNA_P-wetherbeei_contig57991.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57991.1.1 vs. uniprot
Match: A0A3C2B7J5_9ACTN (ABC transmembrane type-1 domain-containing protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B7J5_9ACTN)

HSP 1 Score: 91.7 bits (226), Expect = 5.200e-21
Identity = 44/86 (51.16%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    1 MWGMGAGLTDEDRLDRSQTGAVMRRSLEFAKPYRSAVWKAMVFVTLSTLCTVAGPLLVRIASDHGLSENNASVLNTVIVIYVVIVV 258
            MW  GA ++DEDRLDR+QTG V+RR+L+FA+PYR  +W A+  V+++T+C VAGP+ V++  D G+  N+ S LN  IV Y V +V
Sbjct:    1 MWAAGA-VSDEDRLDRTQTGQVLRRALQFARPYRRTIWLAVALVSITTVCVVAGPVFVKLGLDRGIGGNSPSTLNIAIVGYAVTIV 85          
BLAST of mRNA_P-wetherbeei_contig57991.1.1 vs. uniprot
Match: A0A7K1B7A2_9ACTN (ATP-binding cassette domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A7K1B7A2_9ACTN)

HSP 1 Score: 93.2 bits (230), Expect = 2.950e-20
Identity = 50/90 (55.56%), Postives = 66/90 (73.33%), Query Frame = 1
Query:    1 MWGMGAGLTDEDRLDRSQTGAVMRRSLEFAKPYRSAVWKAMVFVTLSTLCTVAGPLLVRIASDHGLS----ENNASVLNTVIVIYVVIVV 258
            MW  GA L+DEDRLDR +T  V+RRS+EFA PY+  ++ A+ FVT++T+CTVAGPLLV+ A+D GL       + S LNT +V YVV+VV
Sbjct:    1 MWASGA-LSDEDRLDREETSRVLRRSIEFATPYKRFIYAAIGFVTITTVCTVAGPLLVKYATDEGLGGGVGAGSVSALNTAVVAYVVVVV 89          
BLAST of mRNA_P-wetherbeei_contig57991.1.1 vs. uniprot
Match: A0A3C1L8M3_9ACTN (ABC transmembrane type-1 domain-containing protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C1L8M3_9ACTN)

HSP 1 Score: 85.5 bits (210), Expect = 3.680e-18
Identity = 39/75 (52.00%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    1 MWGMGAGLTDEDRLDRSQTGAVMRRSLEFAKPYRSAVWKAMVFVTLSTLCTVAGPLLVRIASDHGLSENNASVLN 225
            MW  GA +++ED+LDR++TG V+RRSL+FA+PYR  +W A+  V++S LCTVAGP+ V+   DHG++  +A+ LN
Sbjct:    1 MWAGGA-VSEEDKLDRAETGRVLRRSLQFAQPYRRTIWWAVGLVSVSALCTVAGPVFVKTGLDHGITNADATALN 74          
BLAST of mRNA_P-wetherbeei_contig57991.1.1 vs. uniprot
Match: A0A6I3EW74_9ACTN (ATP-binding cassette domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A6I3EW74_9ACTN)

HSP 1 Score: 85.9 bits (211), Expect = 1.100e-17
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    1 MWGMGAGLTDEDRLDRSQTGAVMRRSLEFAKPYRSAVWKAMVFVTLSTLCTVAGPLLVRIASDHGLSENNASVLNTVIVIYVVIVV 258
            MW  GA +TDEDRLDR +T  V+RRSL+FA PYR  +W A+  V++  +CTV GP+ V++  D G++  +A  LN  +V Y+  VV
Sbjct:    1 MWA-GAAVTDEDRLDREETSRVLRRSLQFAAPYRRTIWWAIALVSIGAVCTVGGPVFVKLGLDQGINAQSAGTLNLAVVGYIATVV 85          
BLAST of mRNA_P-wetherbeei_contig57991.1.1 vs. uniprot
Match: A0A7X9KMB3_9ACTN (ABC transporter ATP-binding protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9KMB3_9ACTN)

HSP 1 Score: 85.5 bits (210), Expect = 1.500e-17
Identity = 39/75 (52.00%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    1 MWGMGAGLTDEDRLDRSQTGAVMRRSLEFAKPYRSAVWKAMVFVTLSTLCTVAGPLLVRIASDHGLSENNASVLN 225
            MW  GA +++ED+LDR++TG V+RRSL+FA+PYR  +W A+  V++S LCTVAGP+ V+   DHG++  +A+ LN
Sbjct:    1 MWAGGA-VSEEDKLDRAETGRVLRRSLQFAQPYRRTIWWAVGLVSVSALCTVAGPVFVKTGLDHGITNADATALN 74          
BLAST of mRNA_P-wetherbeei_contig57991.1.1 vs. uniprot
Match: A0A7K1C6K0_9ACTN (ATP-binding cassette domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A7K1C6K0_9ACTN)

HSP 1 Score: 83.6 bits (205), Expect = 7.150e-17
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    1 MWGMGAGLTDEDRLDRSQTGAVMRRSLEFAKPYRSAVWKAMVFVTLSTLCTVAGPLLVRIASDHGLSENNASVLNTVIVIYVVI 252
            MWGM A ++DEDRLDR QT   +RRS + A+P R  +  A+  V +STL T+AGPLL+R A DHG+ + N  VLN +IV+Y+ I
Sbjct:    1 MWGM-AAISDEDRLDRVQTLRTLRRSYDMARPQRRTLHSALGLVFVSTLVTLAGPLLLRYAIDHGIKDGNGRVLNGLIVVYLAI 83          
BLAST of mRNA_P-wetherbeei_contig57991.1.1 vs. uniprot
Match: A0A524B2Y5_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium mtb01 TaxID=1967499 RepID=A0A524B2Y5_9ACTN)

HSP 1 Score: 79.0 bits (193), Expect = 3.010e-15
Identity = 41/86 (47.67%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    1 MWGMGAGLTDEDRLDRSQTGAVMRRSLEFAKPYRSAVWKAMVFVTLSTLCTVAGPLLVRIASDHGLSENNASVLNTVIVIYVVIVV 258
            MWGM A ++DEDRLDR++T  V+RR+   A+  R  +  A   V +STL ++AGP+LVR   DHG+ + N S LN V+ +YVV+V+
Sbjct:    1 MWGMSA-ISDEDRLDRTETVGVLRRTYSLARDQRRLILIAFGLVVVSTLVSLAGPVLVRFGIDHGIKDRNGSTLNLVVGLYVVVVI 85          
BLAST of mRNA_P-wetherbeei_contig57991.1.1 vs. uniprot
Match: A0A4P5S834_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A4P5S834_9ACTN)

HSP 1 Score: 77.0 bits (188), Expect = 1.430e-14
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    1 MWGMGAGLTDEDRLDRSQTGAVMRRSLEFAKPYRSAVWKAMVFVTLSTLCTVAGPLLVRIASDHGLSENNASVLN 225
            MW   A +++ED+L+R+QT AV+RRSL  AKP+R +V    +FV +S +CT+AGPLLVR   D G+ +NN+  LN
Sbjct:    1 MWSDSA-ISEEDKLNRTQTQAVLRRSLRMAKPFRRSVAAVFLFVMVSVICTLAGPLLVRYGIDSGIRKNNSRTLN 74          
BLAST of mRNA_P-wetherbeei_contig57991.1.1 vs. uniprot
Match: A0A6L6DZB2_9ACTN (ATP-binding cassette domain-containing protein n=7 Tax=root TaxID=1 RepID=A0A6L6DZB2_9ACTN)

HSP 1 Score: 73.2 bits (178), Expect = 3.230e-13
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1
Query:    7 GMGAGLTDEDRLDRSQTGAVMRRSLEFAKPYRSAVWKAMVFVTLSTLCTVAGPLLVRIASDHGLSENNASVLNTVIVIYVVI 252
            GMG G  +ED+LD++QT  V+ RS+  A  +R     AM+ VT+ST+CT+AGP+LVR   D G+   N   LN  ++ Y+V+
Sbjct:   10 GMGRGTEEEDKLDKTQTRVVLLRSIRLAGEFRRQALWAMILVTISTVCTLAGPVLVRHGIDAGIKAKNDRALNFTVIAYLVV 91          
BLAST of mRNA_P-wetherbeei_contig57991.1.1 vs. uniprot
Match: A0A6I3WS19_9ACTN (ATP-binding cassette domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A6I3WS19_9ACTN)

HSP 1 Score: 70.1 bits (170), Expect = 3.920e-12
Identity = 37/83 (44.58%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    1 MWGMGAGLTDEDRLDRSQTGAVMRRSLEFAKPYRSAVWKAMVFVTLSTLCTVAGPLLVRIASDHGLSENNASVLNTVIVIYVV 249
            MW M A +TD+D+LDR     V+RRS +FA+PYR     A+V VT  T  ++AGP++V+   D GL + N   LN  +  YVV
Sbjct:    3 MWSMTA-VTDDDKLDRETAKKVIRRSWQFARPYRRTTQAALVLVTFWTATSLAGPVIVKYGIDEGLVKKNGHALNMAVAAYVV 84          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57991.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A3C2B7J5_9ACTN5.200e-2151.16ABC transmembrane type-1 domain-containing protein... [more]
A0A7K1B7A2_9ACTN2.950e-2055.56ATP-binding cassette domain-containing protein n=2... [more]
A0A3C1L8M3_9ACTN3.680e-1852.00ABC transmembrane type-1 domain-containing protein... [more]
A0A6I3EW74_9ACTN1.100e-1747.67ATP-binding cassette domain-containing protein n=2... [more]
A0A7X9KMB3_9ACTN1.500e-1752.00ABC transporter ATP-binding protein (Fragment) n=1... [more]
A0A7K1C6K0_9ACTN7.150e-1752.38ATP-binding cassette domain-containing protein n=2... [more]
A0A524B2Y5_9ACTN3.010e-1547.67Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A4P5S834_9ACTN1.430e-1450.67Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A6L6DZB2_9ACTN3.230e-1343.90ATP-binding cassette domain-containing protein n=7... [more]
A0A6I3WS19_9ACTN3.920e-1244.58ATP-binding cassette domain-containing protein n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57991contigP-wetherbeei_contig57991:1..258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1313172.YM304_29200
PFAMsABC_membrane,ABC_tran
Model size258
Max annot lvl84992|Acidimicrobiia
KEGG koko:K06147
KEGG TC3.A.1.106,3.A.1.109,3.A.1.21
Hectar predicted targeting categorysignal anchor
Exons1
Evalue6.13e-10
EggNOG OGsCOG1132@1|root,COG1132@2|Bacteria,2GITR@201174|Actinobacteria,4CNI7@84992|Acidimicrobiia
DescriptionABC transporter transmembrane region
Cds size258
COG categoryV
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186859.4420347-CDS-P-wetherbeei_contig57991:0..2581683186859.4420347-CDS-P-wetherbeei_contig57991:0..258Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57991 1..258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57991.1.1prot_P-wetherbeei_contig57991.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57991 1..258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57991.1.1

>prot_P-wetherbeei_contig57991.1.1 ID=prot_P-wetherbeei_contig57991.1.1|Name=mRNA_P-wetherbeei_contig57991.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=86bp
MWGMGAGLTDEDRLDRSQTGAVMRRSLEFAKPYRSAVWKAMVFVTLSTLC
TVAGPLLVRIASDHGLSENNASVLNTVIVIYVVIVV
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mRNA from alignment at P-wetherbeei_contig57991:1..258-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57991.1.1 ID=mRNA_P-wetherbeei_contig57991.1.1|Name=mRNA_P-wetherbeei_contig57991.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig57991:1..258- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGGGGATGGGCGCGGGCCTGACCGACGAGGACCGGCTCGACCGCTC GCAGACCGGCGCGGTGATGCGCCGCTCGCTCGAGTTCGCCAAGCCGTACC GCAGTGCGGTGTGGAAGGCGATGGTCTTCGTCACCCTCTCGACATTGTGC ACCGTCGCCGGGCCGCTGCTGGTGCGCATCGCCAGTGACCACGGGCTGTC GGAGAACAACGCATCGGTGCTCAACACCGTGATCGTCATCTACGTCGTCA TCGTCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57991:1..258-

>mRNA_P-wetherbeei_contig57991.1.1 ID=mRNA_P-wetherbeei_contig57991.1.1|Name=mRNA_P-wetherbeei_contig57991.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig57991:1..258- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGGGGATGGGCGCGGGCCTGACCGACGAGGACCGGCTCGACCGCTC
GCAGACCGGCGCGGTGATGCGCCGCTCGCTCGAGTTCGCCAAGCCGTACC
GCAGTGCGGTGTGGAAGGCGATGGTCTTCGTCACCCTCTCGACATTGTGC
ACCGTCGCCGGGCCGCTGCTGGTGCGCATCGCCAGTGACCACGGGCTGTC
GGAGAACAACGCATCGGTGCTCAACACCGTGATCGTCATCTACGTCGTCA
TCGTCGTC
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