mRNA_P-wetherbeei_contig5799.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5799.1.2
Unique NamemRNA_P-wetherbeei_contig5799.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5799.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5799contigP-wetherbeei_contig5799:666..3558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2171
Hectar predicted targeting categoryother localisation
Exons4
Cds size2058
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186859.3766859-CDS-P-wetherbeei_contig5799:665..7641683186859.3766859-CDS-P-wetherbeei_contig5799:665..764Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5799 666..764 -
1683186859.3863752-CDS-P-wetherbeei_contig5799:964..10181683186859.3863752-CDS-P-wetherbeei_contig5799:964..1018Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5799 965..1018 -
1683186859.3952527-CDS-P-wetherbeei_contig5799:1213..27241683186859.3952527-CDS-P-wetherbeei_contig5799:1213..2724Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5799 1214..2724 -
1683186859.404153-CDS-P-wetherbeei_contig5799:3052..34461683186859.404153-CDS-P-wetherbeei_contig5799:3052..3446Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5799 3053..3446 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186859.413615-UTR-P-wetherbeei_contig5799:3446..35581683186859.413615-UTR-P-wetherbeei_contig5799:3446..3558Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5799 3447..3558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5799.1.2prot_P-wetherbeei_contig5799.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5799 666..3446 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5799.1.2

>prot_P-wetherbeei_contig5799.1.2 ID=prot_P-wetherbeei_contig5799.1.2|Name=mRNA_P-wetherbeei_contig5799.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=686bp
MPPKKGKKGRRGDGSSDDDAVKSVSTAPSAAAASGAGDKQKDDKQSRAAK
REARKTKKGGKGARGDSSEDDIDPIAHLRGAGRPAALAGSDSDDAPKKPL
TKKEKRRLEDEKEKRRLEDEKKQQQERASPPATAVEASNSNGEDEDEEAQ
QSPLPKPKSPSLSPLPQPSAASHDKDKGKQRRGKASAAADGDDDDGADAL
LETISSLSVGGDSHDSNGFGRSQKGKGKRKGIKGKEKKQAAGGKKDGRRS
GDDDREEDTHGGGGGDGDGDSDDVLTGRAKGRSKGKALDKRAAKAATAAG
AAAQEPIDDDKEKEEDRSSHVVAAVNGAGQRGGETGSDHDDGDDGRRGAI
SKGDRKKGKGNDKGKKRGKAAAGGEDSDGGDADADAMAGHVAAMSVGSDG
GGDRCSDDDDRRETAPRREKGKSKPKRDAAAAAAAAGSDDEDAPARDAPP
ADAAVVEPAAAAAAAGGNASAAKGVEDDGEGAAAAAAEGATSGGSRPSKK
HLTKADRKKLKAKGKGGDEPPPPPPPPEAAAEGEAAAELSLPEPPVAPAA
AAAAPASPVASADGPKALAVAATAGGGKEEAAAIAAAPAAAMVAAATAVP
VPAAAEEAAAGGGAELPAARAAGAAAEQDGEEAGKNKKAPKEKKTKLQKK
LEAATKAKTEAEVAAGLTSETKEAAAREQAAAAEAA
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mRNA from alignment at P-wetherbeei_contig5799:666..3558-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5799.1.2 ID=mRNA_P-wetherbeei_contig5799.1.2|Name=mRNA_P-wetherbeei_contig5799.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2893bp|location=Sequence derived from alignment at P-wetherbeei_contig5799:666..3558- (Phaeothamnion wetherbeei SAG_119_79)
GGACCTTCTGTGAAATATAACTTGAGGGAGAAATCGAGAAATCCAACTGC
TCAGGACCCACACGAGCGATTGATAGTCGTATTACGGAGCCCGCACGTCT
GAACGGGACAAGATGCCGCCGAAGAAGGGGAAGAAAGGAAGACGCGGCGA
CGGTTCGAGCGACGACGACGCCGTCAAGTCCGTCTCCACGGCGCCCAGTG
CAGCGGCAGCTTCGGGAGCCGGCGACAAGCAGAAGGACGACAAGCAGTCC
CGTGCGGCCAAACGAGAGGCTCGGAAGACGAAGAAGGGTGGGAAGGGTGC
TCGTGGAGACAGCAGCGAAGACGACATAGACCCTATCGCGCATCTGCGAG
GAGCTGGTCGGCCAGCAGCGCTTGCCGGTTCTGACTCGGACGACGCGCCG
AAGAAGCCGCTGACGAAGAAGGAGAAGCGCCGGCTGGAGGACGAGAAGGA
GAAGCGCCGGCTGGAGGACGAGAAGAAGCAACAACAGGAACGCGCCAGTC
CGCCAGGTAAGCCCAAGAGTTCGTTTTGCCTGCGCTATCTTCAGTTGAAG
CGTGACGTCGGAGGCTTCGCCTCGGCTCCAGTGCTTCGAACAGCCCTTTT
TTTACGGTTCTTCGAACCTCTCAGAGTCCCTGCTTGTATCGATGGTACAG
CAAGGCATTCTGCCAGGAAAAGCTTTTCAACAGTTTGTTATTCAGACTGG
CTGCATGGCTCGTTAAGCCGCCGCTACCTCCCCAGTCATGCACGTATTAC
ATCTGTTTTTAACACTTTTTCGATGATCCTTTCCGCAATGCCATGTATCA
TCGGCGCTTGTCGTCGGCACGTGTGCCGCGCCAGCGACAGCAGTTGAAGC
ATCCAACTCCAACGGAGAAGACGAGGATGAGGAAGCGCAGCAATCGCCTT
TGCCGAAGCCAAAGTCGCCGTCGCTGTCGCCGTTGCCGCAGCCGTCGGCA
GCTTCGCACGACAAGGACAAGGGCAAGCAGCGGCGCGGCAAGGCGTCCGC
CGCCGCCGACGGCGATGATGACGACGGAGCAGACGCGCTCTTGGAAACGA
TTTCCTCGCTCAGCGTCGGTGGCGACTCGCACGACAGCAATGGTTTTGGC
CGCTCACAAAAGGGAAAGGGCAAGAGGAAGGGTATCAAGGGCAAGGAGAA
GAAGCAGGCCGCGGGCGGCAAGAAGGATGGCCGCCGCAGCGGCGACGACG
ACCGTGAGGAGGACACCCATGGAGGCGGCGGCGGCGACGGCGACGGCGAC
AGCGACGACGTGCTTACGGGCCGCGCAAAAGGCAGGAGCAAAGGCAAGGC
GTTAGACAAGCGCGCCGCCAAAGCGGCGACCGCTGCGGGCGCGGCTGCCC
AGGAGCCTATTGATGACGACAAGGAGAAGGAGGAAGACCGGAGCAGCCAC
GTGGTGGCGGCTGTAAATGGCGCGGGCCAAAGAGGTGGCGAAACCGGCAG
CGACCACGACGACGGTGATGACGGCCGGAGGGGGGCGATATCGAAGGGAG
ACAGAAAGAAGGGCAAAGGCAATGACAAGGGGAAGAAGCGCGGGAAGGCG
GCGGCGGGAGGCGAGGACAGCGATGGCGGCGACGCAGACGCGGACGCTAT
GGCCGGGCACGTGGCGGCCATGAGCGTCGGCAGCGACGGTGGCGGCGACC
GCTGCAGCGATGACGATGACCGTCGAGAGACGGCACCGCGGCGGGAGAAG
GGCAAGTCCAAGCCCAAGCGCGACGCAGCGGCGGCGGCAGCGGCGGCGGG
TTCCGACGATGAGGATGCGCCAGCGCGCGACGCGCCGCCTGCCGATGCGG
CGGTGGTTGAACCAGCGGCCGCTGCCGCGGCCGCCGGCGGCAACGCGTCT
GCGGCAAAGGGTGTGGAGGACGACGGCGAAGGCGCTGCTGCTGCTGCTGC
TGAAGGCGCTACCTCCGGCGGCAGCCGCCCCAGCAAGAAGCACCTTACCA
AGGCCGACCGCAAAAAGCTCAAGGCCAAGGGCAAGGGCGGCGATGAGCCG
CCGCCGCCGCCGCCGCCGCCAGAGGCCGCCGCAGAAGGCGAGGCGGCAGC
AGAGTTGTCGTTGCCGGAGCCGCCGGTGGCACCTGCGGCGGCTGCTGCAG
CGCCAGCGAGTCCTGTGGCTTCGGCCGACGGGCCAAAGGCGTTGGCGGTA
GCGGCGACGGCTGGCGGTGGCAAGGAGGAGGCGGCAGCGATCGCGGCGGC
GCCAGCAGCAGCAATGGTTGCAGCAGCAACTGCCGTGCCAGTCCCGGCGG
CCGCAGAAGAGGCGGCGGCCGGGGGCGGAGCAGAACTGCCAGCCGCTAGA
GCGGCGGGAGCCGCGGCAGAGCAAGACGGCGAAGAAGCTGGCAAAGTGAG
TACGTGATGTTTGCTGGCCATGCCCGTCTATCTGGTTGACGACTCCGATC
ATGTCTTTTGCTGTGATTATATTCGCGCTCATGGGACTTGCAGTTGGAAT
CCGAGGACATGCGAGCAAGCTTATTTTCGTTAGTGTTTTGACACCCGGCC
CTCGGTTCTGCCCGCCCCGCATCCGTCGACCCATTTACAGAACAAGAAGG
CCCCGAAGGAGAAGAAGACCAAGCTGCAAAAGAAGCTTGAAGCGGTGATT
GGCTTCTCCTTCCGCTGTTCCTGCTTTTTCTGCCATCATGGGGCGATTAA
TTTATTTTCTTATTTTCTGAAGCCATCTCTTTTTTTGTTGGCCAGTTTAT
GGATCGAGTGCGCGCCTTATCCACGACTGTTCTCCTGTTTCTCCTCTGTT
TCTCCTTGTTGTTTGCGCCTGCCGTTGGTCACTGTCTCCTGCAGGCCACC
AAGGCAAAGACGGAGGCGGAAGTGGCGGCCGGCCTCACCTCGGAGACGAA
GGAGGCCGCCGCCCGCGAGCAGGCTGCGGCGGCCGAGGCGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5799:666..3558-

>mRNA_P-wetherbeei_contig5799.1.2 ID=mRNA_P-wetherbeei_contig5799.1.2|Name=mRNA_P-wetherbeei_contig5799.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2058bp|location=Sequence derived from alignment at P-wetherbeei_contig5799:666..3558- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCCGAAGAAGGGGAAGAAAGGAAGACGCGGCGACGGTTCGAGCGA
CGACGACGCCGTCAAGTCCGTCTCCACGGCGCCCAGTGCAGCGGCAGCTT
CGGGAGCCGGCGACAAGCAGAAGGACGACAAGCAGTCCCGTGCGGCCAAA
CGAGAGGCTCGGAAGACGAAGAAGGGTGGGAAGGGTGCTCGTGGAGACAG
CAGCGAAGACGACATAGACCCTATCGCGCATCTGCGAGGAGCTGGTCGGC
CAGCAGCGCTTGCCGGTTCTGACTCGGACGACGCGCCGAAGAAGCCGCTG
ACGAAGAAGGAGAAGCGCCGGCTGGAGGACGAGAAGGAGAAGCGCCGGCT
GGAGGACGAGAAGAAGCAACAACAGGAACGCGCCAGTCCGCCAGCGACAG
CAGTTGAAGCATCCAACTCCAACGGAGAAGACGAGGATGAGGAAGCGCAG
CAATCGCCTTTGCCGAAGCCAAAGTCGCCGTCGCTGTCGCCGTTGCCGCA
GCCGTCGGCAGCTTCGCACGACAAGGACAAGGGCAAGCAGCGGCGCGGCA
AGGCGTCCGCCGCCGCCGACGGCGATGATGACGACGGAGCAGACGCGCTC
TTGGAAACGATTTCCTCGCTCAGCGTCGGTGGCGACTCGCACGACAGCAA
TGGTTTTGGCCGCTCACAAAAGGGAAAGGGCAAGAGGAAGGGTATCAAGG
GCAAGGAGAAGAAGCAGGCCGCGGGCGGCAAGAAGGATGGCCGCCGCAGC
GGCGACGACGACCGTGAGGAGGACACCCATGGAGGCGGCGGCGGCGACGG
CGACGGCGACAGCGACGACGTGCTTACGGGCCGCGCAAAAGGCAGGAGCA
AAGGCAAGGCGTTAGACAAGCGCGCCGCCAAAGCGGCGACCGCTGCGGGC
GCGGCTGCCCAGGAGCCTATTGATGACGACAAGGAGAAGGAGGAAGACCG
GAGCAGCCACGTGGTGGCGGCTGTAAATGGCGCGGGCCAAAGAGGTGGCG
AAACCGGCAGCGACCACGACGACGGTGATGACGGCCGGAGGGGGGCGATA
TCGAAGGGAGACAGAAAGAAGGGCAAAGGCAATGACAAGGGGAAGAAGCG
CGGGAAGGCGGCGGCGGGAGGCGAGGACAGCGATGGCGGCGACGCAGACG
CGGACGCTATGGCCGGGCACGTGGCGGCCATGAGCGTCGGCAGCGACGGT
GGCGGCGACCGCTGCAGCGATGACGATGACCGTCGAGAGACGGCACCGCG
GCGGGAGAAGGGCAAGTCCAAGCCCAAGCGCGACGCAGCGGCGGCGGCAG
CGGCGGCGGGTTCCGACGATGAGGATGCGCCAGCGCGCGACGCGCCGCCT
GCCGATGCGGCGGTGGTTGAACCAGCGGCCGCTGCCGCGGCCGCCGGCGG
CAACGCGTCTGCGGCAAAGGGTGTGGAGGACGACGGCGAAGGCGCTGCTG
CTGCTGCTGCTGAAGGCGCTACCTCCGGCGGCAGCCGCCCCAGCAAGAAG
CACCTTACCAAGGCCGACCGCAAAAAGCTCAAGGCCAAGGGCAAGGGCGG
CGATGAGCCGCCGCCGCCGCCGCCGCCGCCAGAGGCCGCCGCAGAAGGCG
AGGCGGCAGCAGAGTTGTCGTTGCCGGAGCCGCCGGTGGCACCTGCGGCG
GCTGCTGCAGCGCCAGCGAGTCCTGTGGCTTCGGCCGACGGGCCAAAGGC
GTTGGCGGTAGCGGCGACGGCTGGCGGTGGCAAGGAGGAGGCGGCAGCGA
TCGCGGCGGCGCCAGCAGCAGCAATGGTTGCAGCAGCAACTGCCGTGCCA
GTCCCGGCGGCCGCAGAAGAGGCGGCGGCCGGGGGCGGAGCAGAACTGCC
AGCCGCTAGAGCGGCGGGAGCCGCGGCAGAGCAAGACGGCGAAGAAGCTG
GCAAAAACAAGAAGGCCCCGAAGGAGAAGAAGACCAAGCTGCAAAAGAAG
CTTGAAGCGGCCACCAAGGCAAAGACGGAGGCGGAAGTGGCGGCCGGCCT
CACCTCGGAGACGAAGGAGGCCGCCGCCCGCGAGCAGGCTGCGGCGGCCG
AGGCGGCC
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