mRNA_P-wetherbeei_contig57988.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57988.1.1
Unique NamemRNA_P-wetherbeei_contig57988.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57988.1.1 vs. uniprot
Match: A0A7X9AFJ7_9BURK (DNA-directed RNA polymerase subunit alpha n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AFJ7_9BURK)

HSP 1 Score: 233 bits (594), Expect = 4.120e-74
Identity = 121/161 (75.16%), Postives = 140/161 (86.96%), Query Frame = 1
Query:    1 RFVVEPLERGFGITLGVSLRRVLLSSLTGAAVTHVRIDGVLHEFSTMAGVREDTTEVILNLKRLNLRLSTEKRKLLRLEAQGPGVVTAADIQLDPEVEVLNPELVIATL-EKGARLGMDLYVARGIGYVPAEKQMNQEQVIGIIPVDSIFSPIMKVNYVVE 480
            +FVVEPLERG+GITLG SLRRVLLSSLTGAAVTH+RIDGVLHEFST+ GV EDTTE+ILNLK+L LRL T+KRKLLRLE  GPGVVTAADI  DPEVE+LNP+LVIA L  K +RLGMDL+VA G GYVP ++Q   +Q IG+IP+DSIFSP++KVNY V+
Sbjct:   22 KFVVEPLERGYGITLGNSLRRVLLSSLTGAAVTHLRIDGVLHEFSTIPGVVEDTTEIILNLKKLRLRLMTDKRKLLRLEVSGPGVVTAADILPDPEVELLNPDLVIAHLTSKDSRLGMDLHVATGTGYVPGDRQNLADQSIGVIPIDSIFSPVVKVNYEVQ 182          
BLAST of mRNA_P-wetherbeei_contig57988.1.1 vs. uniprot
Match: A0A0M2U9Y4_9FIRM (DNA-directed RNA polymerase subunit alpha n=1 Tax=Clostridiales bacterium PH28_bin88 TaxID=1605376 RepID=A0A0M2U9Y4_9FIRM)

HSP 1 Score: 213 bits (542), Expect = 3.210e-66
Identity = 105/160 (65.62%), Postives = 134/160 (83.75%), Query Frame = 1
Query:    1 RFVVEPLERGFGITLGVSLRRVLLSSLTGAAVTHVRIDGVLHEFSTMAGVREDTTEVILNLKRLNLRLSTEKRKLLRLEAQGPGVVTAADIQLDPEVEVLNPELVIATLEKGARLGMDLYVARGIGYVPAEKQMNQEQVIGIIPVDSIFSPIMKVNYVVE 480
            +FVVEPLERG+GITLG SLRR+LLSSL GAA+T V+IDGVLHEFST+ GVRED T++ILNLK LN++L T++ K++RLEA+G G V AADI  D +VE+LNPEL IATL+KG RL  ++ + +G GYVPAEK    +QVIG+IPVDS+FSP+ +VNY++E
Sbjct:   22 KFVVEPLERGYGITLGNSLRRILLSSLPGAAITSVKIDGVLHEFSTIPGVREDVTDIILNLKTLNVKLYTDEPKIVRLEAEGEGEVKAADITHDADVEILNPELHIATLDKGGRLFAEITIEKGRGYVPAEKNKRDDQVIGVIPVDSLFSPVPRVNYLIE 181          
BLAST of mRNA_P-wetherbeei_contig57988.1.1 vs. uniprot
Match: A0A7C2HWY8_9FIRM (DNA-directed RNA polymerase subunit alpha n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C2HWY8_9FIRM)

HSP 1 Score: 212 bits (540), Expect = 7.440e-66
Identity = 110/161 (68.32%), Postives = 133/161 (82.61%), Query Frame = 1
Query:    1 RFVVEPLERGFGITLGVSLRRVLLSSLTGAAVTHVRIDGVLHEFSTMAGVREDTTEVILNLKRLNLRLSTEKRKLLRLEAQGPGVVTAADIQLDPEVEVLNPELVIATLEK-GARLGMDLYVARGIGYVPAEKQMNQEQVIGIIPVDSIFSPIMKVNYVVE 480
            +FVVEPL+RGFG+T+G +LRRVLLSS++GAAVT V+IDGVLHEFST+ GV ED T+++LNLK L LRL T+K KLLRLE QG   VTAADIQ DPEVE++NP L +ATL++  ARL M++ V RG GYVPAE+    E VIG+IPVDSIFSP+ KVNYVVE
Sbjct:   25 KFVVEPLDRGFGVTVGNALRRVLLSSISGAAVTSVKIDGVLHEFSTIPGVVEDVTQIVLNLKELTLRLYTDKPKLLRLEVQGKKDVTAADIQPDPEVEIVNPGLHLATLDRRDARLAMEIVVERGKGYVPAERHRRSEHVIGVIPVDSIFSPVRKVNYVVE 185          
BLAST of mRNA_P-wetherbeei_contig57988.1.1 vs. uniprot
Match: A0A2H5ZUJ0_9BACT (DNA-directed RNA polymerase subunit alpha n=2 Tax=Bacteria TaxID=2 RepID=A0A2H5ZUJ0_9BACT)

HSP 1 Score: 212 bits (539), Expect = 9.380e-66
Identity = 111/161 (68.94%), Postives = 132/161 (81.99%), Query Frame = 1
Query:    1 RFVVEPLERGFGITLGVSLRRVLLSSLTGAAVTHVRIDGVLHEFSTMAGVREDTTEVILNLKRLNLRLSTEKRKLLRLEAQGPGVVTAADIQLDPEVEVLNPELVIATLEK-GARLGMDLYVARGIGYVPAEKQMNQEQVIGIIPVDSIFSPIMKVNYVVE 480
            + VVEPLERGFG+T+G +LRRVLLSS+ GAAVT V+I+GVLHEFST+ GV ED T+++LNLK L LRL T+K KLLRLEA+G   VTAADIQ D EVE+LNP+LVIATL++  ARL M++ V RG GYVPAEK    E VIG+IPVDSIFSP+ KVNY VE
Sbjct:   25 KVVVEPLERGFGVTVGNALRRVLLSSIPGAAVTSVKIEGVLHEFSTVPGVVEDVTQILLNLKELTLRLHTDKPKLLRLEAKGKREVTAADIQPDAEVEILNPDLVIATLDRRDARLAMEMVVERGKGYVPAEKHRKSEHVIGVIPVDSIFSPVQKVNYTVE 185          
BLAST of mRNA_P-wetherbeei_contig57988.1.1 vs. uniprot
Match: A0A0T6AQZ6_9BACT (DNA-directed RNA polymerase subunit alpha n=2 Tax=Terrabacteria group TaxID=1783272 RepID=A0A0T6AQZ6_9BACT)

HSP 1 Score: 211 bits (536), Expect = 2.740e-65
Identity = 112/161 (69.57%), Postives = 130/161 (80.75%), Query Frame = 1
Query:    1 RFVVEPLERGFGITLGVSLRRVLLSSLTGAAVTHVRIDGVLHEFSTMAGVREDTTEVILNLKRLNLRLSTEKRKLLRLEAQGPGVVTAADIQLDPEVEVLNPELVIATLEK-GARLGMDLYVARGIGYVPAEKQMNQEQVIGIIPVDSIFSPIMKVNYVVE 480
            +FVVEPLERGFG+TLG SLRRVLLSS+ GAAVT V+I+GVLHEFST+ GV ED T++ILNLK L L+L T+K KLLRLEA G   VTAAD+Q D EVE+L P+L IATL+K  +RL M+L V RG GYVPAE+    E VIG+IPVDSIFSPI KVNY VE
Sbjct:   25 KFVVEPLERGFGVTLGNSLRRVLLSSIEGAAVTSVKIEGVLHEFSTIPGVVEDVTQIILNLKELTLKLHTDKPKLLRLEAAGKKEVTAADVQPDAEVEILTPDLHIATLDKRDSRLAMELMVERGSGYVPAERHRKSEHVIGVIPVDSIFSPIQKVNYAVE 185          
BLAST of mRNA_P-wetherbeei_contig57988.1.1 vs. uniprot
Match: A0A1Y3QLJ9_9BACL (DNA-directed RNA polymerase subunit alpha n=33 Tax=Paenibacillaceae TaxID=186822 RepID=A0A1Y3QLJ9_9BACL)

HSP 1 Score: 210 bits (534), Expect = 5.040e-65
Identity = 105/160 (65.62%), Postives = 132/160 (82.50%), Query Frame = 1
Query:    1 RFVVEPLERGFGITLGVSLRRVLLSSLTGAAVTHVRIDGVLHEFSTMAGVREDTTEVILNLKRLNLRLSTEKRKLLRLEAQGPGVVTAADIQLDPEVEVLNPELVIATLEKGARLGMDLYVARGIGYVPAEKQMNQEQVIGIIPVDSIFSPIMKVNYVVE 480
            RFVVEPLERG+G+TLG SLRR+LLSSL GAAVT V+IDGVLHEFST+ GV ED TE+ILNLKRL+L++ +++ K+L ++A+G GVVTA DI+ D +VE+LNPEL IATL  GARL M ++  RG GYVPAE+    +Q IG+IPVDSI++PI +VNY VE
Sbjct:   22 RFVVEPLERGYGMTLGNSLRRILLSSLPGAAVTSVQIDGVLHEFSTIPGVLEDVTEIILNLKRLSLKIHSDEEKMLEIDAEGEGVVTAGDIRADSDVEILNPELHIATLASGARLHMRIFAKRGRGYVPAERNKKDDQPIGVIPVDSIYTPITRVNYRVE 181          
BLAST of mRNA_P-wetherbeei_contig57988.1.1 vs. uniprot
Match: A0A151B1K1_9THEO (DNA-directed RNA polymerase subunit alpha n=5 Tax=Moorella TaxID=44260 RepID=A0A151B1K1_9THEO)

HSP 1 Score: 209 bits (532), Expect = 9.810e-65
Identity = 109/160 (68.12%), Postives = 133/160 (83.12%), Query Frame = 1
Query:    1 RFVVEPLERGFGITLGVSLRRVLLSSLTGAAVTHVRIDGVLHEFSTMAGVREDTTEVILNLKRLNLRLSTEKRKLLRLEAQGPGVVTAADIQLDPEVEVLNPELVIATLEKGARLGMDLYVARGIGYVPAEKQMNQEQVIGIIPVDSIFSPIMKVNYVVE 480
            RFVVEPLERG+GITLG SLRR+LLSSL GAAVT V+I+GVLHEFST+ GV EDTTE+ILNLK L L+L T++ K++R+EA+G G VTAADI  D +VEVLNP+L IAT+EKG RL +++ V +G GYV AEK   ++Q IGIIPVDS+FSP+ KVNY VE
Sbjct:   20 RFVVEPLERGYGITLGNSLRRILLSSLPGAAVTTVKIEGVLHEFSTIPGVVEDTTEIILNLKSLALKLHTDEPKVIRIEAEGEGEVTAADIITDADVEVLNPDLHIATVEKGGRLFIEMTVEKGRGYVSAEKNKKEDQPIGIIPVDSLFSPVHKVNYQVE 179          
BLAST of mRNA_P-wetherbeei_contig57988.1.1 vs. uniprot
Match: A0A7C2DMG7_9FIRM (DNA-directed RNA polymerase subunit alpha n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C2DMG7_9FIRM)

HSP 1 Score: 209 bits (531), Expect = 1.390e-64
Identity = 109/161 (67.70%), Postives = 130/161 (80.75%), Query Frame = 1
Query:    1 RFVVEPLERGFGITLGVSLRRVLLSSLTGAAVTHVRIDGVLHEFSTMAGVREDTTEVILNLKRLNLRLSTEKRKLLRLEAQGPGVVTAADIQLDPEVEVLNPELVIATLEK-GARLGMDLYVARGIGYVPAEKQMNQEQVIGIIPVDSIFSPIMKVNYVVE 480
            +FVVEPLERGFG+TLG +LRRVLLSS+ GAAVT V+I+GVLHEF+T+ GV ED T++ILNLK L LRL T+K KLLRLE  G   VTA DIQ D EVE+LNP+L +ATL++  ARL M++ V RG GYVPAE+    E VIG+IPVDSIFSP+ KVNYVVE
Sbjct:   21 KFVVEPLERGFGVTLGNALRRVLLSSIPGAAVTSVKIEGVLHEFTTVPGVVEDVTQIILNLKELTLRLHTDKPKLLRLEVAGKRDVTAGDIQADSEVEILNPDLHLATLDRRDARLAMEIMVERGKGYVPAERHRKSEHVIGVIPVDSIFSPVQKVNYVVE 181          
BLAST of mRNA_P-wetherbeei_contig57988.1.1 vs. uniprot
Match: A0A117KYA7_9THEO (DNA-directed RNA polymerase subunit alpha n=3 Tax=Clostridia TaxID=186801 RepID=A0A117KYA7_9THEO)

HSP 1 Score: 209 bits (531), Expect = 1.390e-64
Identity = 105/160 (65.62%), Postives = 133/160 (83.12%), Query Frame = 1
Query:    1 RFVVEPLERGFGITLGVSLRRVLLSSLTGAAVTHVRIDGVLHEFSTMAGVREDTTEVILNLKRLNLRLSTEKRKLLRLEAQGPGVVTAADIQLDPEVEVLNPELVIATLEKGARLGMDLYVARGIGYVPAEKQMNQEQVIGIIPVDSIFSPIMKVNYVVE 480
            RFV+EPLERG+GITLG SLRRVLLSSL GAAVT V+I+GVLHE+ST+ GV EDTT++ILNLK L L++ +++ ++LR+EA+G G VTA DI    +VE+LNP+L IATLEKG RL M++   RG GYVPAE+   +EQVIG+IPVDS+FSP+ KVNY+VE
Sbjct:   20 RFVIEPLERGYGITLGNSLRRVLLSSLPGAAVTSVKIEGVLHEYSTIPGVVEDTTDIILNLKTLALKIHSDEPQVLRIEAEGEGEVTAGDIITGADVEILNPDLHIATLEKGGRLFMEMTAQRGRGYVPAERNKKEEQVIGVIPVDSLFSPVHKVNYIVE 179          
BLAST of mRNA_P-wetherbeei_contig57988.1.1 vs. uniprot
Match: RPOA_CARHZ (DNA-directed RNA polymerase subunit alpha n=4 Tax=Carboxydothermus TaxID=129957 RepID=RPOA_CARHZ)

HSP 1 Score: 208 bits (530), Expect = 1.970e-64
Identity = 103/160 (64.38%), Postives = 132/160 (82.50%), Query Frame = 1
Query:    1 RFVVEPLERGFGITLGVSLRRVLLSSLTGAAVTHVRIDGVLHEFSTMAGVREDTTEVILNLKRLNLRLSTEKRKLLRLEAQGPGVVTAADIQLDPEVEVLNPELVIATLEKGARLGMDLYVARGIGYVPAEKQMNQEQVIGIIPVDSIFSPIMKVNYVVE 480
            RFV+EPLERG+GITLG S+RR+LLSSL GAAVT ++I+GVLHEFST+ GV ED TE+ILN+K L L+L  ++ ++LR+EA+G GV+TA DI   PEVE+LNP+LVIA + +G RL M++ VARG GYVPAE+    E VIG+IPVDSIFSP++KVN+ VE
Sbjct:   20 RFVIEPLERGYGITLGNSMRRILLSSLPGAAVTSIKIEGVLHEFSTVPGVVEDVTEIILNIKNLTLKLHGDEEQVLRIEAEGEGVITAKDIIAPPEVEILNPDLVIAHIAEGGRLFMEMTVARGRGYVPAERNKKGEHVIGVIPVDSIFSPVLKVNFQVE 179          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57988.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9AFJ7_9BURK4.120e-7475.16DNA-directed RNA polymerase subunit alpha n=1 Tax=... [more]
A0A0M2U9Y4_9FIRM3.210e-6665.63DNA-directed RNA polymerase subunit alpha n=1 Tax=... [more]
A0A7C2HWY8_9FIRM7.440e-6668.32DNA-directed RNA polymerase subunit alpha n=1 Tax=... [more]
A0A2H5ZUJ0_9BACT9.380e-6668.94DNA-directed RNA polymerase subunit alpha n=2 Tax=... [more]
A0A0T6AQZ6_9BACT2.740e-6569.57DNA-directed RNA polymerase subunit alpha n=2 Tax=... [more]
A0A1Y3QLJ9_9BACL5.040e-6565.63DNA-directed RNA polymerase subunit alpha n=33 Tax... [more]
A0A151B1K1_9THEO9.810e-6568.13DNA-directed RNA polymerase subunit alpha n=5 Tax=... [more]
A0A7C2DMG7_9FIRM1.390e-6467.70DNA-directed RNA polymerase subunit alpha n=1 Tax=... [more]
A0A117KYA7_9THEO1.390e-6465.63DNA-directed RNA polymerase subunit alpha n=3 Tax=... [more]
RPOA_CARHZ1.970e-6464.38DNA-directed RNA polymerase subunit alpha n=4 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57988contigP-wetherbeei_contig57988:3..482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog246194.CHY_2281
Preferred namerpoA
PFAMsRNA_pol_A_CTD,RNA_pol_A_bac,RNA_pol_L
Model size480
Max annot lvl186801|Clostridia
KEGG rclassRC02795
KEGG koko:K03040
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00183
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.23e-65
EggNOG OGsCOG0202@1|root,COG0202@2|Bacteria,1TPR8@1239|Firmicutes,248DS@186801|Clostridia,42FI6@68295|Thermoanaerobacterales
EC2.7.7.6
DescriptionDNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Cds size480
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186859.3478525-CDS-P-wetherbeei_contig57988:2..4821683186859.3478525-CDS-P-wetherbeei_contig57988:2..482Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57988 3..482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57988.1.1prot_P-wetherbeei_contig57988.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57988 3..482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57988.1.1

>prot_P-wetherbeei_contig57988.1.1 ID=prot_P-wetherbeei_contig57988.1.1|Name=mRNA_P-wetherbeei_contig57988.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
RFVVEPLERGFGITLGVSLRRVLLSSLTGAAVTHVRIDGVLHEFSTMAGV
REDTTEVILNLKRLNLRLSTEKRKLLRLEAQGPGVVTAADIQLDPEVEVL
NPELVIATLEKGARLGMDLYVARGIGYVPAEKQMNQEQVIGIIPVDSIFS
PIMKVNYVVE
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mRNA from alignment at P-wetherbeei_contig57988:3..482-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57988.1.1 ID=mRNA_P-wetherbeei_contig57988.1.1|Name=mRNA_P-wetherbeei_contig57988.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig57988:3..482- (Phaeothamnion wetherbeei SAG_119_79)
CGCTTCGTTGTGGAGCCCCTCGAGCGTGGTTTTGGAATTACCCTGGGCGT CTCGCTGCGCCGCGTTCTGTTGTCTTCTCTGACCGGAGCAGCCGTGACCC ACGTCCGTATCGACGGCGTGCTCCACGAGTTCTCCACGATGGCCGGCGTT CGTGAGGATACCACCGAGGTTATCCTGAATCTGAAGCGCTTGAACCTGCG TCTCTCCACCGAGAAGCGCAAACTTCTTCGCCTCGAGGCTCAGGGTCCGG GTGTGGTCACTGCAGCTGACATCCAGCTTGATCCCGAAGTTGAAGTTCTC AATCCTGAGCTCGTCATCGCAACCCTCGAAAAGGGTGCTCGACTGGGTAT GGACCTGTATGTCGCTCGCGGCATCGGTTACGTTCCCGCCGAGAAGCAGA TGAATCAGGAGCAGGTCATCGGCATTATCCCCGTTGACAGCATCTTCAGC CCCATTATGAAAGTCAATTACGTTGTCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57988:3..482-

>mRNA_P-wetherbeei_contig57988.1.1 ID=mRNA_P-wetherbeei_contig57988.1.1|Name=mRNA_P-wetherbeei_contig57988.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig57988:3..482- (Phaeothamnion wetherbeei SAG_119_79)
CGCTTCGTTGTGGAGCCCCTCGAGCGTGGTTTTGGAATTACCCTGGGCGT
CTCGCTGCGCCGCGTTCTGTTGTCTTCTCTGACCGGAGCAGCCGTGACCC
ACGTCCGTATCGACGGCGTGCTCCACGAGTTCTCCACGATGGCCGGCGTT
CGTGAGGATACCACCGAGGTTATCCTGAATCTGAAGCGCTTGAACCTGCG
TCTCTCCACCGAGAAGCGCAAACTTCTTCGCCTCGAGGCTCAGGGTCCGG
GTGTGGTCACTGCAGCTGACATCCAGCTTGATCCCGAAGTTGAAGTTCTC
AATCCTGAGCTCGTCATCGCAACCCTCGAAAAGGGTGCTCGACTGGGTAT
GGACCTGTATGTCGCTCGCGGCATCGGTTACGTTCCCGCCGAGAAGCAGA
TGAATCAGGAGCAGGTCATCGGCATTATCCCCGTTGACAGCATCTTCAGC
CCCATTATGAAAGTCAATTACGTTGTCGAG
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