mRNA_P-wetherbeei_contig5798.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5798.2.1
Unique NamemRNA_P-wetherbeei_contig5798.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig5798.2.1 vs. uniprot
Match: D8LCP7_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP7_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.240e-15
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:   19 RFEELAVEAKQGQVNLGIMAGERRAAAAAAAELSEQKKVLVREVKAGRRALAEAKAVNGRLAAAYESLERTLR 237
            R E + V+ +QGQVNLGIMAGERRAAAA AAELSEQK++LVREVK  RR+LAEA +VN RLA AYESLE++LR
Sbjct:  416 RLEAIMVDVEQGQVNLGIMAGERRAAAAKAAELSEQKRLLVREVKLSRRSLAEATSVNRRLARAYESLEQSLR 488
[Close]
BLAST of mRNA_P-wetherbeei_contig5798.2.1 vs. uniprot
Match: A0A6H5JHM0_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM0_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 3.010e-14
Identity = 51/73 (69.86%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:   19 RFEELAVEAKQGQVNLGIMAGERRAAAAAAAELSEQKKVLVREVKAGRRALAEAKAVNGRLAAAYESLERTLR 237
            R E + V+ +QGQVNLGIMAGERRAA A  AELSEQK++LVREVK  RR+LAEA +VN RL  AYESLE++LR
Sbjct:  421 RLEAIMVDVEQGQVNLGIMAGERRAAVAKVAELSEQKRLLVREVKLSRRSLAEASSVNRRLVRAYESLEQSLR 493
[Close]
BLAST of mRNA_P-wetherbeei_contig5798.2.1 vs. uniprot
Match: A0A835Z0T3_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0T3_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 5.770e-11
Identity = 45/74 (60.81%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:    1 LADVRRRFEELAVEAKQGQVNLGIMAGERRAAAAAAAELSEQKKVLVREVKAGRRALAEAKAVNGRLAAAYESL 222
            L +  R+  E  ++A+QGQVNLGI+AGERRA    AA L++QK+VLVREV+A R ALA+A+ VN RLAAAYE+L
Sbjct:  364 LGEQARQLREALLQAEQGQVNLGILAGERRALEGRAAALADQKRVLVREVRAARAALADAQRVNARLAAAYEAL 437
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5798.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCP7_ECTSI1.240e-1573.97PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JHM0_9PHAE3.010e-1469.86PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A835Z0T3_9STRA5.770e-1160.81PH domain-containing protein n=1 Tax=Tribonema min... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5798contigP-wetherbeei_contig5798:1018..3634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LCP7
PFAMsPH
Model size2617
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.49e-09
EggNOG OGs2E9MN@1|root,2SFYW@2759|Eukaryota
DescriptionPleckstrin homology domain.
Cds size2127
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186859.3036242-UTR-P-wetherbeei_contig5798:1017..14351683186859.3036242-UTR-P-wetherbeei_contig5798:1017..1435Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5798 1018..1435 -
1683186859.32029-UTR-P-wetherbeei_contig5798:3562..36341683186859.32029-UTR-P-wetherbeei_contig5798:3562..3634Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5798 3563..3634 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186859.3123674-CDS-P-wetherbeei_contig5798:1435..35621683186859.3123674-CDS-P-wetherbeei_contig5798:1435..3562Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5798 1436..3562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5798.2.1prot_P-wetherbeei_contig5798.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5798 1436..3562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5798.2.1

>prot_P-wetherbeei_contig5798.2.1 ID=prot_P-wetherbeei_contig5798.2.1|Name=mRNA_P-wetherbeei_contig5798.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=709bp
MAGERRAAAAAAAELSEQKKVLVREVKAGRRALAEAKAVNGRLAAAYESL
ERTLRLGAVARSDSTSGAAAEYSLASATAGPPASGGGGGAADTCALRAGP
PLSPTSTTSSTAGSFDSSHGGGSGGTGDGGHGGRQRQLSSSGDDSSAAAA
GDNGGDDAGPALLVRNLSTGDVGVVVPNSGATAAAAAAAAASADGSSGCS
AGSDGSAERDKSLLNQMDVLGSRLKLQAWRWSHGRRDSTAAAGTPTAAPA
AASAVAGPTLIPAFESVSGSPAEAEVSSAASMTCVDCEAKRPLQLAPRRR
SGAISAAELEAAEEAPMLAMLAAPAAPATEAAGASASPTAFVAAGAAATA
DTVTGTRAASSSATPSSSPEDDADRERSSTGASGDSARSDAVPSRDEGER
DAAAAMHSFSLLVPTATAAAAKGSSADGGDAAEAFKIRCFRCDGTVEGPE
YSTCQCRIPQLELLPPGTSAAATAKPGAAAAAAAAAHGIVKMKGVLRSWT
TALDSAATHKWRATGGGGGGGGEGAAAAAATTLAAAAAAAAAAAAVETPA
EMAVPAAAVLPPVAATAALAAAAAAPAAAAAAPAAGAVMLTATADALPEA
SVTAPEAAIVVNPVLLAGTTCKEQAPDVPSDSNDSIGGGGAAFDSCRGGG
AAGSAETALAATLLELSTVELAAPAATAGASNSAAPGARPPAAVAAAVLA
GVGSEVTL*
back to top

mRNA from alignment at P-wetherbeei_contig5798:1018..3634-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5798.2.1 ID=mRNA_P-wetherbeei_contig5798.2.1|Name=mRNA_P-wetherbeei_contig5798.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2617bp|location=Sequence derived from alignment at P-wetherbeei_contig5798:1018..3634- (Phaeothamnion wetherbeei SAG_119_79)
CTCGCCGACGTGCGGCGACGTTTCGAGGAGCTGGCTGTCGAGGCAAAGCA
GGGGCAGGTTAACCTCGGCATTATGGCCGGGGAGCGTCGGGCGGCGGCAG
CGGCAGCGGCCGAGCTGAGCGAGCAGAAGAAGGTGCTGGTACGCGAGGTC
AAGGCCGGTCGTCGCGCGCTCGCCGAGGCCAAGGCTGTCAACGGCCGCCT
CGCTGCCGCCTACGAGTCGCTCGAGCGGACATTGCGGCTCGGCGCTGTTG
CCCGCTCCGACTCTACCTCTGGCGCCGCCGCTGAGTACTCTCTTGCTTCT
GCTACAGCGGGACCGCCGGCTAGCGGTGGTGGCGGCGGCGCCGCGGACAC
GTGTGCGCTGCGGGCGGGGCCGCCGCTGTCACCGACGAGCACGACGTCGA
GCACGGCCGGCTCGTTCGATTCGAGCCATGGCGGCGGCAGCGGCGGTACT
GGCGACGGTGGTCATGGCGGGCGTCAGCGGCAGCTGTCCTCTTCCGGAGA
CGATTCCAGCGCGGCTGCTGCTGGCGACAATGGCGGCGATGACGCTGGGC
CGGCGCTGCTCGTGCGGAACCTCTCGACGGGAGACGTTGGGGTGGTAGTG
CCGAACAGCGGCGCCACCGCCGCTGCGGCAGCCGCCGCCGCAGCATCTGC
CGATGGCAGCAGCGGCTGTTCGGCGGGCTCGGACGGATCTGCGGAGAGAG
ACAAGTCGCTTCTGAACCAGATGGACGTGCTCGGGTCACGGCTCAAGCTT
CAGGCGTGGCGCTGGAGCCACGGGCGGCGCGATTCGACGGCTGCAGCGGG
AACTCCGACAGCGGCGCCGGCCGCGGCATCGGCGGTGGCCGGACCGACGT
TGATACCCGCATTCGAAAGCGTGAGTGGCTCTCCGGCGGAGGCAGAAGTG
TCGTCGGCGGCGTCAATGACATGCGTCGATTGCGAAGCGAAGCGTCCGCT
GCAACTGGCTCCGCGACGCCGCTCCGGCGCCATCAGTGCAGCCGAACTGG
AAGCCGCCGAGGAAGCGCCAATGCTGGCCATGCTGGCGGCTCCGGCAGCG
CCAGCGACAGAAGCCGCCGGTGCGTCCGCATCGCCGACGGCGTTCGTCGC
CGCTGGCGCCGCCGCCACAGCTGACACCGTCACTGGTACGAGGGCCGCCT
CGTCTTCCGCCACGCCATCGTCGTCGCCGGAGGACGACGCGGACCGCGAG
CGCAGCAGCACGGGCGCCTCTGGAGACAGCGCCCGCAGTGATGCGGTCCC
GTCGCGCGATGAAGGCGAGCGCGACGCCGCTGCTGCCATGCATTCCTTTT
CGTTGTTGGTGCCGACGGCGACAGCTGCTGCGGCGAAAGGCAGCAGCGCC
GATGGCGGAGATGCCGCCGAGGCGTTCAAGATCCGCTGCTTCCGCTGCGA
CGGCACGGTGGAGGGTCCCGAGTACAGCACTTGTCAGTGCAGAATTCCAC
AACTCGAGCTGCTGCCGCCGGGCACGTCGGCGGCAGCAACGGCGAAGCCC
GGAGCGGCGGCCGCGGCGGCCGCCGCCGCCCACGGCATCGTCAAGATGAA
GGGTGTGCTGCGTTCGTGGACGACGGCGCTCGACTCCGCGGCGACGCACA
AGTGGCGTGCCACAGGCGGGGGAGGGGGTGGCGGCGGTGAAGGTGCAGCA
GCTGCAGCGGCGACGACGTTGGCGGCAGCAGCGGCGGCGGCTGCCGCGGC
GGCGGCTGTGGAAACGCCTGCGGAAATGGCGGTGCCTGCGGCAGCGGTGC
TACCACCTGTGGCGGCGACGGCGGCGCTTGCTGCAGCGGCGGCGGCGCCT
GCTGCTGCGGCGGCGGCGCCTGCGGCAGGGGCGGTGATGCTTACGGCGAC
GGCCGATGCATTACCAGAAGCGTCAGTGACGGCGCCGGAGGCGGCGATCG
TTGTGAATCCGGTGCTGTTGGCGGGGACCACGTGCAAGGAGCAAGCTCCT
GATGTTCCTTCCGACAGCAACGACAGCATCGGAGGCGGCGGCGCCGCCTT
CGACAGCTGCAGGGGCGGCGGCGCGGCCGGCAGCGCTGAAACGGCCTTGG
CCGCAACCCTTTTGGAGCTTTCCACTGTTGAACTTGCTGCGCCTGCCGCC
ACAGCTGGCGCCAGCAACAGCGCGGCGCCGGGGGCGAGACCGCCGGCAGC
GGTGGCAGCTGCTGTGCTGGCCGGCGTTGGATCAGAAGTGACGCTTTGAA
GAGCGGGGTGTTCACCTGCTAGTTCATCAGCAAACGGCGGCAGACGGGCA
GAATGGCAAGAAATATATGCGAAAGGCCTATTTGCTGCAGCTACACGCGA
GCAGCAAACCGGTATGACTGTCGGCGGGAGTCGTGCGGCCACCCGGCAAG
CCGATGGCTGACGCTGTTCTGGAGGCCTGCCGGCGGCATGATGCATGGAA
GGGCGATGCACTGCAAATGGACAAGCTAGCATCTAACCTAACCGCCGTCT
TCTGACCGATACGTTTAGCGATCCAAAACATGTACGGCGATTAAGACTTA
GCTGGCTGCTTGCGGCATGGCAGAGGAACGGCCTTCGAAAGTCGAGTGGA
GAGGGTTGGTTGGCGGCCCTGACCAGTGCAAGCCTTTTTGAAACAATACT
TAAGATTTCGTCCGCCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5798:1018..3634-

>mRNA_P-wetherbeei_contig5798.2.1 ID=mRNA_P-wetherbeei_contig5798.2.1|Name=mRNA_P-wetherbeei_contig5798.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2127bp|location=Sequence derived from alignment at P-wetherbeei_contig5798:1018..3634- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGGGGAGCGTCGGGCGGCGGCAGCGGCAGCGGCCGAGCTGAGCGA
GCAGAAGAAGGTGCTGGTACGCGAGGTCAAGGCCGGTCGTCGCGCGCTCG
CCGAGGCCAAGGCTGTCAACGGCCGCCTCGCTGCCGCCTACGAGTCGCTC
GAGCGGACATTGCGGCTCGGCGCTGTTGCCCGCTCCGACTCTACCTCTGG
CGCCGCCGCTGAGTACTCTCTTGCTTCTGCTACAGCGGGACCGCCGGCTA
GCGGTGGTGGCGGCGGCGCCGCGGACACGTGTGCGCTGCGGGCGGGGCCG
CCGCTGTCACCGACGAGCACGACGTCGAGCACGGCCGGCTCGTTCGATTC
GAGCCATGGCGGCGGCAGCGGCGGTACTGGCGACGGTGGTCATGGCGGGC
GTCAGCGGCAGCTGTCCTCTTCCGGAGACGATTCCAGCGCGGCTGCTGCT
GGCGACAATGGCGGCGATGACGCTGGGCCGGCGCTGCTCGTGCGGAACCT
CTCGACGGGAGACGTTGGGGTGGTAGTGCCGAACAGCGGCGCCACCGCCG
CTGCGGCAGCCGCCGCCGCAGCATCTGCCGATGGCAGCAGCGGCTGTTCG
GCGGGCTCGGACGGATCTGCGGAGAGAGACAAGTCGCTTCTGAACCAGAT
GGACGTGCTCGGGTCACGGCTCAAGCTTCAGGCGTGGCGCTGGAGCCACG
GGCGGCGCGATTCGACGGCTGCAGCGGGAACTCCGACAGCGGCGCCGGCC
GCGGCATCGGCGGTGGCCGGACCGACGTTGATACCCGCATTCGAAAGCGT
GAGTGGCTCTCCGGCGGAGGCAGAAGTGTCGTCGGCGGCGTCAATGACAT
GCGTCGATTGCGAAGCGAAGCGTCCGCTGCAACTGGCTCCGCGACGCCGC
TCCGGCGCCATCAGTGCAGCCGAACTGGAAGCCGCCGAGGAAGCGCCAAT
GCTGGCCATGCTGGCGGCTCCGGCAGCGCCAGCGACAGAAGCCGCCGGTG
CGTCCGCATCGCCGACGGCGTTCGTCGCCGCTGGCGCCGCCGCCACAGCT
GACACCGTCACTGGTACGAGGGCCGCCTCGTCTTCCGCCACGCCATCGTC
GTCGCCGGAGGACGACGCGGACCGCGAGCGCAGCAGCACGGGCGCCTCTG
GAGACAGCGCCCGCAGTGATGCGGTCCCGTCGCGCGATGAAGGCGAGCGC
GACGCCGCTGCTGCCATGCATTCCTTTTCGTTGTTGGTGCCGACGGCGAC
AGCTGCTGCGGCGAAAGGCAGCAGCGCCGATGGCGGAGATGCCGCCGAGG
CGTTCAAGATCCGCTGCTTCCGCTGCGACGGCACGGTGGAGGGTCCCGAG
TACAGCACTTGTCAGTGCAGAATTCCACAACTCGAGCTGCTGCCGCCGGG
CACGTCGGCGGCAGCAACGGCGAAGCCCGGAGCGGCGGCCGCGGCGGCCG
CCGCCGCCCACGGCATCGTCAAGATGAAGGGTGTGCTGCGTTCGTGGACG
ACGGCGCTCGACTCCGCGGCGACGCACAAGTGGCGTGCCACAGGCGGGGG
AGGGGGTGGCGGCGGTGAAGGTGCAGCAGCTGCAGCGGCGACGACGTTGG
CGGCAGCAGCGGCGGCGGCTGCCGCGGCGGCGGCTGTGGAAACGCCTGCG
GAAATGGCGGTGCCTGCGGCAGCGGTGCTACCACCTGTGGCGGCGACGGC
GGCGCTTGCTGCAGCGGCGGCGGCGCCTGCTGCTGCGGCGGCGGCGCCTG
CGGCAGGGGCGGTGATGCTTACGGCGACGGCCGATGCATTACCAGAAGCG
TCAGTGACGGCGCCGGAGGCGGCGATCGTTGTGAATCCGGTGCTGTTGGC
GGGGACCACGTGCAAGGAGCAAGCTCCTGATGTTCCTTCCGACAGCAACG
ACAGCATCGGAGGCGGCGGCGCCGCCTTCGACAGCTGCAGGGGCGGCGGC
GCGGCCGGCAGCGCTGAAACGGCCTTGGCCGCAACCCTTTTGGAGCTTTC
CACTGTTGAACTTGCTGCGCCTGCCGCCACAGCTGGCGCCAGCAACAGCG
CGGCGCCGGGGGCGAGACCGCCGGCAGCGGTGGCAGCTGCTGTGCTGGCC
GGCGTTGGATCAGAAGTGACGCTTTGA
back to top