mRNA_P-wetherbeei_contig57899.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57899.1.1
Unique NamemRNA_P-wetherbeei_contig57899.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57899.1.1 vs. uniprot
Match: A0A7V8WT59_9CHLR (SH3 domain-containing protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8WT59_9CHLR)

HSP 1 Score: 88.6 bits (218), Expect = 1.410e-18
Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:   10 DLSKAIGSATVTGTNGEGIRCRVAADNSAATIVILPEGTVVQVFDTSTSGWLQISCGGQLGYGDINYLYTGGASDDQI---NQGGRLTVS 270
            D S AIGSA V GT   G++CR AAD +A TI +L EGT V V   +   WL I+CGGQLGYGD+ +LY+GGA+       ++GG +TVS
Sbjct:  431 DESAAIGSAEVQGTGESGLKCRAAADATAPTITVLAEGTRVLVMAEAEGDWLAIACGGQLGYGDVRFLYSGGAAPADFTADDKGGTVTVS 520
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BLAST of mRNA_P-wetherbeei_contig57899.1.1 vs. uniprot
Match: A0A7W0S614_9CHLR (SH3 domain-containing protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0S614_9CHLR)

HSP 1 Score: 62.0 bits (149), Expect = 3.080e-9
Identity = 35/81 (43.21%), Postives = 45/81 (55.56%), Query Frame = 1 
Query:   28 GSATVTGTNGEGIRCRVAADNSAATIVILPEGTVVQVFDTSTSGWLQISCGGQLGYGDINYLYTGGASDDQINQGGRLTVS 270
            G ATV+GTNGEG+RCR  A  SA TI +LPEG  V V   +   W  ++CGG  GY   +++    A       G RL V+
Sbjct:  284 GMATVSGTNGEGLRCRSGASYSATTITVLPEGDKVGVTGAAVGEWQPVACGGLNGYVHTDFITI--AESAAAPAGARLAVT 362
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57899.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7V8WT59_9CHLR1.410e-1852.22SH3 domain-containing protein (Fragment) n=1 Tax=C... [more]
A0A7W0S614_9CHLR3.080e-943.21SH3 domain-containing protein (Fragment) n=1 Tax=C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57899contigP-wetherbeei_contig57899:233..502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog479434.Sthe_0923
PFAMsNLPC_P60,SH3_3
Model size270
Max annot lvl189775|Thermomicrobia
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.07e-05
EggNOG OGsCOG0791@1|root,COG3103@1|root,COG0791@2|Bacteria,COG3103@2|Bacteria,COG4991@2|Bacteria,2G99E@200795|Chloroflexi,27XPH@189775|Thermomicrobia
DescriptionNlpC/P60 family
Cds size270
COG categoryMT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186858.2735898-CDS-P-wetherbeei_contig57899:232..5021683186858.2735898-CDS-P-wetherbeei_contig57899:232..502Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57899 233..502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57899.1.1prot_P-wetherbeei_contig57899.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57899 233..502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57899.1.1

>prot_P-wetherbeei_contig57899.1.1 ID=prot_P-wetherbeei_contig57899.1.1|Name=mRNA_P-wetherbeei_contig57899.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
AGPDLSKAIGSATVTGTNGEGIRCRVAADNSAATIVILPEGTVVQVFDTS
TSGWLQISCGGQLGYGDINYLYTGGASDDQINQGGRLTVS
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mRNA from alignment at P-wetherbeei_contig57899:233..502+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57899.1.1 ID=mRNA_P-wetherbeei_contig57899.1.1|Name=mRNA_P-wetherbeei_contig57899.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig57899:233..502+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGGCCCGGACCTCTCCAAGGCCATCGGCTCCGCGACCGTCACCGGCAC
CAACGGCGAGGGCATCCGCTGCCGCGTCGCCGCCGACAACAGCGCGGCGA
CCATCGTCATCCTGCCGGAAGGCACCGTCGTCCAGGTCTTCGACACCTCG
ACCTCCGGCTGGCTCCAGATCTCCTGCGGTGGCCAGCTCGGCTACGGCGA
CATCAACTACCTCTACACCGGTGGCGCCAGCGACGACCAGATCAACCAGG
GCGGACGCCTGACCGTCTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57899:233..502+

>mRNA_P-wetherbeei_contig57899.1.1 ID=mRNA_P-wetherbeei_contig57899.1.1|Name=mRNA_P-wetherbeei_contig57899.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig57899:233..502+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGGCCCGGACCTCTCCAAGGCCATCGGCTCCGCGACCGTCACCGGCAC
CAACGGCGAGGGCATCCGCTGCCGCGTCGCCGCCGACAACAGCGCGGCGA
CCATCGTCATCCTGCCGGAAGGCACCGTCGTCCAGGTCTTCGACACCTCG
ACCTCCGGCTGGCTCCAGATCTCCTGCGGTGGCCAGCTCGGCTACGGCGA
CATCAACTACCTCTACACCGGTGGCGCCAGCGACGACCAGATCAACCAGG
GCGGACGCCTGACCGTCTCC
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