mRNA_P-wetherbeei_contig57895.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57895.1.1
Unique NamemRNA_P-wetherbeei_contig57895.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57895.1.1 vs. uniprot
Match: A0A1Q4C2B2_9HYPH (Uncharacterized protein n=1 Tax=Rhizobiales bacterium 62-47 TaxID=1895811 RepID=A0A1Q4C2B2_9HYPH)

HSP 1 Score: 219 bits (557), Expect = 6.670e-67
Identity = 104/148 (70.27%), Postives = 121/148 (81.76%), Query Frame = 1 
Query:   16 DTQSLRGFIAQVEKSYPGEVLRIKEPVRTHLDMTSLVFELERMGRSPVVMFENVEGRDMPVVTNVAGNRKLLALALGVDAHELPSAFRERCARYTPVEVVEKAAWQEVTIEGDDVDLTRLPVPFHFEIDAAPYITAGQITARDPETGV 459
            D QSLRGF+ +VEK+ P +VLRI+EPV   L+MTS +FEL+R+ RSPVV+FENVEG DMPVVTNVAGNRKLLA  LG D   LP+AFR+RC  Y P EVV K AW EV +EGD +DLT+LP+PF F +DAAPYITAGQITARDPETGV
Sbjct:    2 DNQSLRGFVEKVEKTNPEDVLRIREPVSQQLEMTSTIFELDRLNRSPVVIFENVEGFDMPVVTNVAGNRKLLAQCLGSDVQSLPTAFRDRCQTYIPPEVVSKGAWDEVVLEGDQIDLTKLPIPFQFSVDAAPYITAGQITARDPETGV 149
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BLAST of mRNA_P-wetherbeei_contig57895.1.1 vs. uniprot
Match: A0A239ER13_9BRAD (UbiD family decarboxylase n=2 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A239ER13_9BRAD)

HSP 1 Score: 216 bits (549), Expect = 1.130e-65
Identity = 101/148 (68.24%), Postives = 123/148 (83.11%), Query Frame = 1 
Query:   16 DTQSLRGFIAQVEKSYPGEVLRIKEPVRTHLDMTSLVFELERMGRSPVVMFENVEGRDMPVVTNVAGNRKLLALALGVDAHELPSAFRERCARYTPVEVVEKAAWQEVTIEGDDVDLTRLPVPFHFEIDAAPYITAGQITARDPETGV 459
            D QSLRGF+A  EK+ P ++LRI+E V   L+MTS++FEL+R+G+SPVV+FE V G +MPVVTN+AG+RKLLA  LGVDA +LP+AFRERC  Y P EVVEK AW +V IEGDD+DLT+LP+PF F +DAAPYITAGQI ARDPETGV
Sbjct:    4 DNQSLRGFLATTEKTQPDQILRIREQVSRELEMTSVIFELDRIGKSPVVVFEKVAGSEMPVVTNIAGSRKLLADCLGVDAKDLPTAFRERCQTYIPCEVVEKGAWDDVVIEGDDIDLTKLPIPFQFSVDAAPYITAGQICARDPETGV 151
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BLAST of mRNA_P-wetherbeei_contig57895.1.1 vs. uniprot
Match: UPI001BCACE94 (UbiD family decarboxylase n=1 Tax=Bradyrhizobium sp. dw_411 TaxID=2720082 RepID=UPI001BCACE94)

HSP 1 Score: 210 bits (534), Expect = 1.960e-63
Identity = 96/148 (64.86%), Postives = 120/148 (81.08%), Query Frame = 1 
Query:   16 DTQSLRGFIAQVEKSYPGEVLRIKEPVRTHLDMTSLVFELERMGRSPVVMFENVEGRDMPVVTNVAGNRKLLALALGVDAHELPSAFRERCARYTPVEVVEKAAWQEVTIEGDDVDLTRLPVPFHFEIDAAPYITAGQITARDPETGV 459
            D QSLRGF+  VE+ +P E+LRI+EPV  +L+MTS+VFEL+R+G+SPVV+FEN+EG   PVVTN+AGNRKLLA  L  +A  LP+AFR+RC  Y P EVV + AW ++ +EGD VDLT+LP+PF F +DAAPYITAGQI ARDPETGV
Sbjct:    4 DNQSLRGFLETVEQEFPEEILRIREPVSRNLEMTSVVFELDRLGKSPVVIFENIEGTKTPVVTNIAGNRKLLAHCLNAEARNLPTAFRDRCQNYIPCEVVSRGAWDDIVLEGDQVDLTQLPIPFQFSVDAAPYITAGQICARDPETGV 151
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BLAST of mRNA_P-wetherbeei_contig57895.1.1 vs. uniprot
Match: A0A327KUA7_9HYPH (Uncharacterized protein n=2 Tax=Rhodoplanes roseus TaxID=29409 RepID=A0A327KUA7_9HYPH)

HSP 1 Score: 209 bits (532), Expect = 2.850e-63
Identity = 98/137 (71.53%), Postives = 113/137 (82.48%), Query Frame = 1 
Query:   49 VEKSYPGEVLRIKEPVRTHLDMTSLVFELERMGRSPVVMFENVEGRDMPVVTNVAGNRKLLALALGVDAHELPSAFRERCARYTPVEVVEKAAWQEVTIEGDDVDLTRLPVPFHFEIDAAPYITAGQITARDPETGV 459
            V  +YP E+LRI+EPVRTHLD+TS VFELE+ GR PVV+FE VEG  MPVVTN  GNR+LLA  LGV+A +LP+AFRERC RY P EVV+ A WQEVT+EGDDVDLTRLP+P HF +D APYITAGQ+ ARDP TGV
Sbjct:    2 VATTYPEEILRIREPVRTHLDITSTVFELEKAGRDPVVVFETVEGHSMPVVTNTTGNRRLLAACLGVEAADLPTAFRERCQRYLPCEVVDTAPWQEVTLEGDDVDLTRLPIPIHFSVDGAPYITAGQLVARDPVTGV 138
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BLAST of mRNA_P-wetherbeei_contig57895.1.1 vs. uniprot
Match: A0A6N7F5C2_9PROT (UbiD family decarboxylase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7F5C2_9PROT)

HSP 1 Score: 207 bits (527), Expect = 2.070e-62
Identity = 99/146 (67.81%), Postives = 118/146 (80.82%), Query Frame = 1 
Query:   22 QSLRGFIAQVEKSYPGEVLRIKEPVRTHLDMTSLVFELERMGRSPVVMFENVEGRDMPVVTNVAGNRKLLALALGVDAHELPSAFRERCARYTPVEVVEKAAWQEVTIEGDDVDLTRLPVPFHFEIDAAPYITAGQITARDPETGV 459
            QSLRGF+  V++ +P E +RI  PVR   D+TS VFELER GRSPVV+FE+VEG D+PVVTNVAGNR+LLA A+G    +LP A+RERC  Y PVEVV  A WQEV +EG++VDLTRLP+P HF++DAAPYITAGQI ARDPETGV
Sbjct:    4 QSLRGFLDMVQRDFPDEFVRIAAPVRREFDITSAVFELERSGRSPVVLFEDVEGFDLPVVTNVAGNRQLLAAAMGTAPDDLPLAYRERCQDYRPVEVVGDAPWQEVVLEGEEVDLTRLPIPLHFQVDAAPYITAGQIAARDPETGV 149
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BLAST of mRNA_P-wetherbeei_contig57895.1.1 vs. uniprot
Match: A0A1Q7BHY5_9PROT (Uncharacterized protein n=7 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A1Q7BHY5_9PROT)

HSP 1 Score: 206 bits (524), Expect = 6.650e-62
Identity = 97/150 (64.67%), Postives = 117/150 (78.00%), Query Frame = 1 
Query:   10 DADTQSLRGFIAQVEKSYPGEVLRIKEPVRTHLDMTSLVFELERMGRSPVVMFENVEGRDMPVVTNVAGNRKLLALALGVDAHELPSAFRERCARYTPVEVVEKAAWQEVTIEGDDVDLTRLPVPFHFEIDAAPYITAGQITARDPETGV 459
            D D QSLRGF+  VE  YP E+LR++EP+    D T+LVFEL+  G+SPVV+ ENV G  MP+VTNVAGNRKLLA  LGV+  +LPSAFRERC +Y P EVV++ AW EV +EGDDVDL +LP+P  F++DAAPYITAGQI ARDP TGV
Sbjct:    6 DNDNQSLRGFLRLVETEYPDELLRVREPIDLRFDATALVFELDHAGKSPVVVCENVRGSGMPLVTNVAGNRKLLAACLGVEPADLPSAFRERCQKYIPCEVVDRGAWDEVVLEGDDVDLAKLPIPLQFKVDAAPYITAGQIVARDPVTGV 155
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BLAST of mRNA_P-wetherbeei_contig57895.1.1 vs. uniprot
Match: W9GW44_9PROT (Decarboxylase UbiD n=1 Tax=Skermanella stibiiresistens SB22 TaxID=1385369 RepID=W9GW44_9PROT)

HSP 1 Score: 206 bits (523), Expect = 9.380e-62
Identity = 99/151 (65.56%), Postives = 118/151 (78.15%), Query Frame = 1 
Query:    7 PDADTQSLRGFIAQVEKSYPGEVLRIKEPVRTHLDMTSLVFELERMGRSPVVMFENVEGRDMPVVTNVAGNRKLLALALGVDAHELPSAFRERCARYTPVEVVEKAAWQEVTIEGDDVDLTRLPVPFHFEIDAAPYITAGQITARDPETGV 459
            P  D QSLRGF+  VE+ +P ++LRIK+PV +  DMTS+ FELE+MGR PV++FE VEG DMPVVTNVA +RKLLA  LGV+  +LP+AFRERC  Y P E V+ A W EV IEGDDVDLT+LP+P  F +DAAPYITAGQI ARDP TGV
Sbjct:    5 PPFDRQSLRGFLDFVEREFPDDLLRIKQPVSSTFDMTSVAFELEKMGRDPVLVFEKVEGFDMPVVTNVAASRKLLAACLGVEPGDLPTAFRERCQTYIPCETVDWAPWNEVVIEGDDVDLTKLPIPLQFSVDAAPYITAGQIVARDPVTGV 155
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BLAST of mRNA_P-wetherbeei_contig57895.1.1 vs. uniprot
Match: A0A6L5FKI2_9HYPH (UbiD family decarboxylase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FKI2_9HYPH)

HSP 1 Score: 206 bits (523), Expect = 9.600e-62
Identity = 96/150 (64.00%), Postives = 119/150 (79.33%), Query Frame = 1 
Query:   10 DADTQSLRGFIAQVEKSYPGEVLRIKEPVRTHLDMTSLVFELERMGRSPVVMFENVEGRDMPVVTNVAGNRKLLALALGVDAHELPSAFRERCARYTPVEVVEKAAWQEVTIEGDDVDLTRLPVPFHFEIDAAPYITAGQITARDPETGV 459
            + D QSLRGF+  VE +YP E++RI+EPV    DMT+LVFELER G++PVV+ E+V G DMPVVTNVA NR+LLA  LGVD  +LP+AFRERC +Y P E+V +AAW EV IEG+DVDL +LP+P  F +D APYITAGQI+ARDP +GV
Sbjct:    7 NVDNQSLRGFLRMVETNYPDELVRIREPVNPRFDMTALVFELERSGKNPVVLLESVAGYDMPVVTNVAANRRLLAACLGVDVRDLPTAFRERCQKYIPCELVAEAAWNEVVIEGNDVDLNKLPIPLQFSVDGAPYITAGQISARDPVSGV 156
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BLAST of mRNA_P-wetherbeei_contig57895.1.1 vs. uniprot
Match: A0A1F7T0U8_9BACT (Uncharacterized protein n=1 Tax=Candidatus Tectomicrobia bacterium RIFCSPLOWO2_02_FULL_70_19 TaxID=1802342 RepID=A0A1F7T0U8_9BACT)

HSP 1 Score: 205 bits (521), Expect = 1.620e-61
Identity = 96/146 (65.75%), Postives = 117/146 (80.14%), Query Frame = 1 
Query:   22 QSLRGFIAQVEKSYPGEVLRIKEPVRTHLDMTSLVFELERMGRSPVVMFENVEGRDMPVVTNVAGNRKLLALALGVDAHELPSAFRERCARYTPVEVVEKAAWQEVTIEGDDVDLTRLPVPFHFEIDAAPYITAGQITARDPETGV 459
            QSLRGF+  VE+ +P E++R +EPV   LD+TS VFE ER GR P+++F+ VEG D+PVVTN+A NR+LLA ALGV    LP+A+RERC  Y PVEVV  A W+EV IEGD+VDLTRLP+P HFE+DAAPYITAGQ+ ARDPETGV
Sbjct:    4 QSLRGFLRMVEQDFPEEIVRFREPVGRRLDITSTVFEFERAGRYPILIFDRVEGFDIPVVTNIAANRRLLAAALGVKPDGLPTAYRERCQNYIPVEVVPDAPWKEVVIEGDEVDLTRLPIPLHFEVDAAPYITAGQLVARDPETGV 149
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BLAST of mRNA_P-wetherbeei_contig57895.1.1 vs. uniprot
Match: UPI00049843DE (UbiD family decarboxylase n=1 Tax=Bradyrhizobium sp. URHD0069 TaxID=1380355 RepID=UPI00049843DE)

HSP 1 Score: 204 bits (519), Expect = 3.300e-61
Identity = 97/149 (65.10%), Postives = 118/149 (79.19%), Query Frame = 1 
Query:   13 ADTQSLRGFIAQVEKSYPGEVLRIKEPVRTHLDMTSLVFELERMGRSPVVMFENVEGRDMPVVTNVAGNRKLLALALGVDAHELPSAFRERCARYTPVEVVEKAAWQEVTIEGDDVDLTRLPVPFHFEIDAAPYITAGQITARDPETGV 459
            AD QSLRGFI   EK+  G+VLRI EPV   L+MTS +FEL+R+ +SPVV+FENV G DMPVVTN+AGNRKLLA +L  D   LP+AFR+RC  Y P EVV K A+ +V +EG ++DLT+LP+P+ F +DAAPYITAGQITARDPETGV
Sbjct:    3 ADNQSLRGFIEATEKADAGDVLRISEPVSQQLEMTSTIFELDRLNKSPVVIFENVVGFDMPVVTNIAGNRKLLARSLNCDVQNLPTAFRDRCQNYIPCEVVAKGAFDDVVLEGSEIDLTKLPIPYQFSVDAAPYITAGQITARDPETGV 151
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57895.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Q4C2B2_9HYPH6.670e-6770.27Uncharacterized protein n=1 Tax=Rhizobiales bacter... [more]
A0A239ER13_9BRAD1.130e-6568.24UbiD family decarboxylase n=2 Tax=Bradyrhizobiacea... [more]
UPI001BCACE941.960e-6364.86UbiD family decarboxylase n=1 Tax=Bradyrhizobium s... [more]
A0A327KUA7_9HYPH2.850e-6371.53Uncharacterized protein n=2 Tax=Rhodoplanes roseus... [more]
A0A6N7F5C2_9PROT2.070e-6267.81UbiD family decarboxylase n=1 Tax=Alphaproteobacte... [more]
A0A1Q7BHY5_9PROT6.650e-6264.67Uncharacterized protein n=7 Tax=unclassified Alpha... [more]
W9GW44_9PROT9.380e-6265.56Decarboxylase UbiD n=1 Tax=Skermanella stibiiresis... [more]
A0A6L5FKI2_9HYPH9.600e-6264.00UbiD family decarboxylase n=1 Tax=Hyphomicrobiales... [more]
A0A1F7T0U8_9BACT1.620e-6165.75Uncharacterized protein n=1 Tax=Candidatus Tectomi... [more]
UPI00049843DE3.300e-6165.10UbiD family decarboxylase n=1 Tax=Bradyrhizobium s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57895contigP-wetherbeei_contig57895:2..460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1380355.JNIJ01000031_gene3496
PFAMsUbiD
Model size459
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.99e-59
EggNOG OGsCOG0043@1|root,COG0043@2|Bacteria,1MU62@1224|Proteobacteria,2TTSQ@28211|Alphaproteobacteria,3JUGX@41294|Bradyrhizobiaceae
Description3-octaprenyl-4-hydroxybenzoate carboxy-lyase
Cds size456
COG categoryH
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186858.1995428-CDS-P-wetherbeei_contig57895:1..4571683186858.1995428-CDS-P-wetherbeei_contig57895:1..457Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57895 2..457 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186858.2099683-UTR-P-wetherbeei_contig57895:457..4601683186858.2099683-UTR-P-wetherbeei_contig57895:457..460Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig57895 458..460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57895.1.1prot_P-wetherbeei_contig57895.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57895 2..457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57895.1.1

>prot_P-wetherbeei_contig57895.1.1 ID=prot_P-wetherbeei_contig57895.1.1|Name=mRNA_P-wetherbeei_contig57895.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
MPDADTQSLRGFIAQVEKSYPGEVLRIKEPVRTHLDMTSLVFELERMGRS
PVVMFENVEGRDMPVVTNVAGNRKLLALALGVDAHELPSAFRERCARYTP
VEVVEKAAWQEVTIEGDDVDLTRLPVPFHFEIDAAPYITAGQITARDPET
GV
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mRNA from alignment at P-wetherbeei_contig57895:2..460-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57895.1.1 ID=mRNA_P-wetherbeei_contig57895.1.1|Name=mRNA_P-wetherbeei_contig57895.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig57895:2..460- (Phaeothamnion wetherbeei SAG_119_79)
ACGATGCCGGACGCCGATACGCAAAGCCTTCGTGGCTTCATCGCCCAGGT
CGAAAAGTCCTATCCGGGCGAGGTGCTCCGCATCAAGGAGCCGGTGCGAA
CGCATCTCGACATGACGTCGCTCGTGTTCGAACTCGAGCGGATGGGCCGC
AGCCCGGTCGTCATGTTCGAGAACGTCGAAGGCCGCGACATGCCCGTCGT
CACCAATGTGGCAGGCAACCGCAAGCTGCTGGCGCTGGCGCTCGGTGTCG
ATGCGCACGAACTTCCCTCCGCGTTCCGGGAGCGTTGCGCCCGCTACACG
CCCGTCGAAGTCGTCGAAAAGGCGGCGTGGCAGGAGGTGACGATCGAGGG
CGACGACGTCGATCTCACGCGGCTGCCGGTCCCCTTCCACTTCGAGATCG
ATGCCGCCCCCTACATCACGGCGGGGCAGATCACGGCGCGCGACCCGGAG
ACCGGCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57895:2..460-

>mRNA_P-wetherbeei_contig57895.1.1 ID=mRNA_P-wetherbeei_contig57895.1.1|Name=mRNA_P-wetherbeei_contig57895.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig57895:2..460- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGACGCCGATACGCAAAGCCTTCGTGGCTTCATCGCCCAGGTCGA
AAAGTCCTATCCGGGCGAGGTGCTCCGCATCAAGGAGCCGGTGCGAACGC
ATCTCGACATGACGTCGCTCGTGTTCGAACTCGAGCGGATGGGCCGCAGC
CCGGTCGTCATGTTCGAGAACGTCGAAGGCCGCGACATGCCCGTCGTCAC
CAATGTGGCAGGCAACCGCAAGCTGCTGGCGCTGGCGCTCGGTGTCGATG
CGCACGAACTTCCCTCCGCGTTCCGGGAGCGTTGCGCCCGCTACACGCCC
GTCGAAGTCGTCGAAAAGGCGGCGTGGCAGGAGGTGACGATCGAGGGCGA
CGACGTCGATCTCACGCGGCTGCCGGTCCCCTTCCACTTCGAGATCGATG
CCGCCCCCTACATCACGGCGGGGCAGATCACGGCGCGCGACCCGGAGACC
GGCGTC
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