mRNA_P-wetherbeei_contig57880.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: A0A0F2KQT6_9PROT (HTH cro/C1-type domain-containing protein n=15 Tax=Azospirillum TaxID=191 RepID=A0A0F2KQT6_9PROT) HSP 1 Score: 92.4 bits (228), Expect = 2.570e-22 Identity = 48/96 (50.00%), Postives = 73/96 (76.04%), Query Frame = 1
Query: 1 IEFLLPAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQKPKRQRGRR 288
+ + P ++ SVAAR R RR+AL L+++E+A RSGV +L+RFE +G +AFD+L+R+A+ LDA + F LF +P F++LD+V+E+ PKRQRG+R
Sbjct: 4 LSLMAPGDVARSVAARARARRVALGLTQQEVADRSGVNIWTLRRFEASGKLAFDALIRVAVVLDAIEEFGTLFPEPEFRSLDEVIER-PKRQRGKR 98
BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: UPI0015D4E412 (helix-turn-helix transcriptional regulator n=1 Tax=Azospirillum oleiclasticum TaxID=2735135 RepID=UPI0015D4E412) HSP 1 Score: 91.7 bits (226), Expect = 5.170e-22 Identity = 46/96 (47.92%), Postives = 74/96 (77.08%), Query Frame = 1
Query: 1 IEFLLPAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQKPKRQRGRR 288
+ + P ++ +VAAR R RR+AL L+++++A RSGV +L+RFE +G +AFD+L+R+A+ LDA +GF LF +P F++LD+V+++ PKRQRG+R
Sbjct: 4 LSLMAPGDVARTVAARARARRVALGLTQQDVADRSGVNIWTLRRFEASGKLAFDALIRVAVVLDAVEGFGSLFPEPEFRSLDEVIDR-PKRQRGKR 98
BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: UPI000D650E8C (helix-turn-helix domain-containing protein n=1 Tax=Azospirillum sp. TSH100 TaxID=652764 RepID=UPI000D650E8C) HSP 1 Score: 89.4 bits (220), Expect = 3.610e-20 Identity = 45/96 (46.88%), Postives = 72/96 (75.00%), Query Frame = 1
Query: 1 IEFLLPAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQKPKRQRGRR 288
+ + P ++ SVA R R RR+AL L+++E+A RSGV +L+RFE +G +AFD+L+R+A+ LDA + F LF +P +++LD+V+++ PKRQRG+R
Sbjct: 88 LSLMTPGDVARSVAVRARARRVALGLTQQEVADRSGVNIWTLRRFEASGKLAFDALIRVAVVLDAIEAFGTLFPEPEYRSLDEVIDR-PKRQRGKR 182
BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: UPI0019969BC2 (Helix-turn-helix transcriptional regulator n=1 Tax=Gloeobacterales cyanobacterium ES-bin-313 TaxID=2812629 RepID=UPI0019969BC2) HSP 1 Score: 82.8 bits (203), Expect = 1.550e-18 Identity = 49/93 (52.69%), Postives = 66/93 (70.97%), Query Frame = 1
Query: 16 PAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAK--PVFQNLDDVLEQKPKRQRGRR 288
P EI +A + + RLALA+++EELA RSGV+ +S+KRFERTG I+ SL++LA+ LDA D F LF + + LD +L+Q PKRQRGRR
Sbjct: 9 PQEIAQKIAVQAKESRLALAMTQEELARRSGVSLSSIKRFERTGQISLASLLQLALVLDALDPFKTLFTQGEALPATLDLLLKQTPKRQRGRR 101
BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: UPI001A95D7DA (helix-turn-helix domain-containing protein n=1 Tax=Azospirillum sp. SYSU D00513 TaxID=2812561 RepID=UPI001A95D7DA) HSP 1 Score: 81.3 bits (199), Expect = 6.610e-18 Identity = 46/91 (50.55%), Postives = 64/91 (70.33%), Query Frame = 1
Query: 16 PAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQKPKRQRGRR 288
P +I VA R R+RRL L L++ EL+ R+ V SL+RFE TG IAFD+L+R+A LDA + F LF +P F++ D+++ + PKRQRGRR
Sbjct: 9 PGDIAHGVAERARSRRLGLGLTQAELSERASVNIWSLRRFEATGKIAFDALIRIAFVLDAVEEFGGLFPEPEFRSPDELISR-PKRQRGRR 98
BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: UPI0019BC4043 (Helix-turn-helix transcriptional regulator n=1 Tax=Gloeobacterales cyanobacterium ES-bin-141 TaxID=2812628 RepID=UPI0019BC4043) HSP 1 Score: 80.5 bits (197), Expect = 1.260e-17 Identity = 48/94 (51.06%), Postives = 66/94 (70.21%), Query Frame = 1
Query: 16 PAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKP--VFQNLDDVLEQKPKRQRGRRT 291
P I S+A R R RRLAL L++E LA RSGV+ +LKRFERTG I+ ++L++LA L+A DGF+ LF +P + LD++L + K QRGRR+
Sbjct: 9 PKSIVRSLAERARGRRLALGLTQEGLARRSGVSLGTLKRFERTGQISLETLLQLAQVLNAFDGFNALFTEPEGLPATLDEILAEPKKPQRGRRS 102
BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: A0A7V7E9K2_9PROT (Helix-turn-helix transcriptional regulator n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A7V7E9K2_9PROT) HSP 1 Score: 80.1 bits (196), Expect = 1.370e-17 Identity = 42/84 (50.00%), Postives = 61/84 (72.62%), Query Frame = 1
Query: 37 VAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQKPKRQRGRR 288
V+ + RT RL+ A+++ +LAAR+G++ ASL+RFERTG +F+ + R+A+AL A GF LF PVF NLD+ L + R+RGRR
Sbjct: 2 VSEKARTLRLSAAMTQADLAARAGISIASLRRFERTGEASFELVARIALALRAEAGFGELFNPPVFSNLDEALSRSVPRKRGRR 85
BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: A0A841GYG0_9BACT (Transcriptional regulator with XRE-family HTH domain n=1 Tax=Longimicrobium terrae TaxID=1639882 RepID=A0A841GYG0_9BACT) HSP 1 Score: 80.1 bits (196), Expect = 1.980e-17 Identity = 49/98 (50.00%), Postives = 65/98 (66.33%), Query Frame = 1
Query: 1 IEFLLPAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQKPK--RQRGRR 288
+E P EIT VAAR R RL +++ELA R+GVT A+ +RFERTG IAFD L+++A+ LDAR GFD LF P ++L ++ + RQRGRR
Sbjct: 4 VELRTPNEITRLVAARVRELRLNRGWTQQELADRAGVTLATYRRFERTGRIAFDRLLKIAVVLDARSGFDQLFTLPPARSLAELAARSEPMTRQRGRR 101
BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: UPI0019030D30 (helix-turn-helix domain-containing protein n=1 Tax=Azospirillum sp. YIM B02556 TaxID=2800326 RepID=UPI0019030D30) HSP 1 Score: 79.0 bits (193), Expect = 4.950e-17 Identity = 50/97 (51.55%), Postives = 65/97 (67.01%), Query Frame = 1
Query: 4 EFLLPAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQKP-KRQRGRRT 291
EF P ++ +VA R R RLA L++E LAARSGV+ SLKRFE TG+I+ +SL RLAI L A DGF LF+ F + +VL P KR+RGR++
Sbjct: 5 EFASPDDLCRAVAKRAREMRLAADLTQEGLAARSGVSLGSLKRFESTGAISLESLARLAITLRAEDGFGGLFSPRPFATMAEVLAVPPAKRRRGRKS 101
BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: A0A2K2UA39_9ACTN (XRE family transcriptional regulator n=1 Tax=Enteroscipio rubneri TaxID=2070686 RepID=A0A2K2UA39_9ACTN) HSP 1 Score: 77.4 bits (189), Expect = 1.620e-16 Identity = 40/83 (48.19%), Postives = 62/83 (74.70%), Query Frame = 1
Query: 16 PAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQK 264
P EI LS+A R R RR L L++++L+A++G++ AS KRFE+ G IAFD+L+R+AIAL + D FD LFA+ + ++++V+ K
Sbjct: 9 PGEIALSIAERVRARRKELGLTQKQLSAKAGMSLASYKRFEQKGLIAFDALIRIAIALGSEDDFDGLFAQRGYASIEEVIRGK 91 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig57880.1.1 >prot_P-wetherbeei_contig57880.1.1 ID=prot_P-wetherbeei_contig57880.1.1|Name=mRNA_P-wetherbeei_contig57880.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp IEFLLPAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSback to top mRNA from alignment at P-wetherbeei_contig57880:1..306+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig57880.1.1 ID=mRNA_P-wetherbeei_contig57880.1.1|Name=mRNA_P-wetherbeei_contig57880.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig57880:1..306+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig57880:1..306+ >mRNA_P-wetherbeei_contig57880.1.1 ID=mRNA_P-wetherbeei_contig57880.1.1|Name=mRNA_P-wetherbeei_contig57880.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig57880:1..306+ (Phaeothamnion wetherbeei SAG_119_79)back to top |