mRNA_P-wetherbeei_contig57880.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57880.1.1
Unique NamemRNA_P-wetherbeei_contig57880.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: A0A0F2KQT6_9PROT (HTH cro/C1-type domain-containing protein n=15 Tax=Azospirillum TaxID=191 RepID=A0A0F2KQT6_9PROT)

HSP 1 Score: 92.4 bits (228), Expect = 2.570e-22
Identity = 48/96 (50.00%), Postives = 73/96 (76.04%), Query Frame = 1
Query:    1 IEFLLPAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQKPKRQRGRR 288
            +  + P ++  SVAAR R RR+AL L+++E+A RSGV   +L+RFE +G +AFD+L+R+A+ LDA + F  LF +P F++LD+V+E+ PKRQRG+R
Sbjct:    4 LSLMAPGDVARSVAARARARRVALGLTQQEVADRSGVNIWTLRRFEASGKLAFDALIRVAVVLDAIEEFGTLFPEPEFRSLDEVIER-PKRQRGKR 98          
BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: UPI0015D4E412 (helix-turn-helix transcriptional regulator n=1 Tax=Azospirillum oleiclasticum TaxID=2735135 RepID=UPI0015D4E412)

HSP 1 Score: 91.7 bits (226), Expect = 5.170e-22
Identity = 46/96 (47.92%), Postives = 74/96 (77.08%), Query Frame = 1
Query:    1 IEFLLPAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQKPKRQRGRR 288
            +  + P ++  +VAAR R RR+AL L+++++A RSGV   +L+RFE +G +AFD+L+R+A+ LDA +GF  LF +P F++LD+V+++ PKRQRG+R
Sbjct:    4 LSLMAPGDVARTVAARARARRVALGLTQQDVADRSGVNIWTLRRFEASGKLAFDALIRVAVVLDAVEGFGSLFPEPEFRSLDEVIDR-PKRQRGKR 98          
BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: UPI000D650E8C (helix-turn-helix domain-containing protein n=1 Tax=Azospirillum sp. TSH100 TaxID=652764 RepID=UPI000D650E8C)

HSP 1 Score: 89.4 bits (220), Expect = 3.610e-20
Identity = 45/96 (46.88%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    1 IEFLLPAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQKPKRQRGRR 288
            +  + P ++  SVA R R RR+AL L+++E+A RSGV   +L+RFE +G +AFD+L+R+A+ LDA + F  LF +P +++LD+V+++ PKRQRG+R
Sbjct:   88 LSLMTPGDVARSVAVRARARRVALGLTQQEVADRSGVNIWTLRRFEASGKLAFDALIRVAVVLDAIEAFGTLFPEPEYRSLDEVIDR-PKRQRGKR 182          
BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: UPI0019969BC2 (Helix-turn-helix transcriptional regulator n=1 Tax=Gloeobacterales cyanobacterium ES-bin-313 TaxID=2812629 RepID=UPI0019969BC2)

HSP 1 Score: 82.8 bits (203), Expect = 1.550e-18
Identity = 49/93 (52.69%), Postives = 66/93 (70.97%), Query Frame = 1
Query:   16 PAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAK--PVFQNLDDVLEQKPKRQRGRR 288
            P EI   +A + +  RLALA+++EELA RSGV+ +S+KRFERTG I+  SL++LA+ LDA D F  LF +   +   LD +L+Q PKRQRGRR
Sbjct:    9 PQEIAQKIAVQAKESRLALAMTQEELARRSGVSLSSIKRFERTGQISLASLLQLALVLDALDPFKTLFTQGEALPATLDLLLKQTPKRQRGRR 101          
BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: UPI001A95D7DA (helix-turn-helix domain-containing protein n=1 Tax=Azospirillum sp. SYSU D00513 TaxID=2812561 RepID=UPI001A95D7DA)

HSP 1 Score: 81.3 bits (199), Expect = 6.610e-18
Identity = 46/91 (50.55%), Postives = 64/91 (70.33%), Query Frame = 1
Query:   16 PAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQKPKRQRGRR 288
            P +I   VA R R+RRL L L++ EL+ R+ V   SL+RFE TG IAFD+L+R+A  LDA + F  LF +P F++ D+++ + PKRQRGRR
Sbjct:    9 PGDIAHGVAERARSRRLGLGLTQAELSERASVNIWSLRRFEATGKIAFDALIRIAFVLDAVEEFGGLFPEPEFRSPDELISR-PKRQRGRR 98          
BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: UPI0019BC4043 (Helix-turn-helix transcriptional regulator n=1 Tax=Gloeobacterales cyanobacterium ES-bin-141 TaxID=2812628 RepID=UPI0019BC4043)

HSP 1 Score: 80.5 bits (197), Expect = 1.260e-17
Identity = 48/94 (51.06%), Postives = 66/94 (70.21%), Query Frame = 1
Query:   16 PAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKP--VFQNLDDVLEQKPKRQRGRRT 291
            P  I  S+A R R RRLAL L++E LA RSGV+  +LKRFERTG I+ ++L++LA  L+A DGF+ LF +P  +   LD++L +  K QRGRR+
Sbjct:    9 PKSIVRSLAERARGRRLALGLTQEGLARRSGVSLGTLKRFERTGQISLETLLQLAQVLNAFDGFNALFTEPEGLPATLDEILAEPKKPQRGRRS 102          
BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: A0A7V7E9K2_9PROT (Helix-turn-helix transcriptional regulator n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A7V7E9K2_9PROT)

HSP 1 Score: 80.1 bits (196), Expect = 1.370e-17
Identity = 42/84 (50.00%), Postives = 61/84 (72.62%), Query Frame = 1
Query:   37 VAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQKPKRQRGRR 288
            V+ + RT RL+ A+++ +LAAR+G++ ASL+RFERTG  +F+ + R+A+AL A  GF  LF  PVF NLD+ L +   R+RGRR
Sbjct:    2 VSEKARTLRLSAAMTQADLAARAGISIASLRRFERTGEASFELVARIALALRAEAGFGELFNPPVFSNLDEALSRSVPRKRGRR 85          
BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: A0A841GYG0_9BACT (Transcriptional regulator with XRE-family HTH domain n=1 Tax=Longimicrobium terrae TaxID=1639882 RepID=A0A841GYG0_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 1.980e-17
Identity = 49/98 (50.00%), Postives = 65/98 (66.33%), Query Frame = 1
Query:    1 IEFLLPAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQKPK--RQRGRR 288
            +E   P EIT  VAAR R  RL    +++ELA R+GVT A+ +RFERTG IAFD L+++A+ LDAR GFD LF  P  ++L ++  +     RQRGRR
Sbjct:    4 VELRTPNEITRLVAARVRELRLNRGWTQQELADRAGVTLATYRRFERTGRIAFDRLLKIAVVLDARSGFDQLFTLPPARSLAELAARSEPMTRQRGRR 101          
BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: UPI0019030D30 (helix-turn-helix domain-containing protein n=1 Tax=Azospirillum sp. YIM B02556 TaxID=2800326 RepID=UPI0019030D30)

HSP 1 Score: 79.0 bits (193), Expect = 4.950e-17
Identity = 50/97 (51.55%), Postives = 65/97 (67.01%), Query Frame = 1
Query:    4 EFLLPAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQKP-KRQRGRRT 291
            EF  P ++  +VA R R  RLA  L++E LAARSGV+  SLKRFE TG+I+ +SL RLAI L A DGF  LF+   F  + +VL   P KR+RGR++
Sbjct:    5 EFASPDDLCRAVAKRAREMRLAADLTQEGLAARSGVSLGSLKRFESTGAISLESLARLAITLRAEDGFGGLFSPRPFATMAEVLAVPPAKRRRGRKS 101          
BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Match: A0A2K2UA39_9ACTN (XRE family transcriptional regulator n=1 Tax=Enteroscipio rubneri TaxID=2070686 RepID=A0A2K2UA39_9ACTN)

HSP 1 Score: 77.4 bits (189), Expect = 1.620e-16
Identity = 40/83 (48.19%), Postives = 62/83 (74.70%), Query Frame = 1
Query:   16 PAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGSIAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQK 264
            P EI LS+A R R RR  L L++++L+A++G++ AS KRFE+ G IAFD+L+R+AIAL + D FD LFA+  + ++++V+  K
Sbjct:    9 PGEIALSIAERVRARRKELGLTQKQLSAKAGMSLASYKRFEQKGLIAFDALIRIAIALGSEDDFDGLFAQRGYASIEEVIRGK 91          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57880.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0F2KQT6_9PROT2.570e-2250.00HTH cro/C1-type domain-containing protein n=15 Tax... [more]
UPI0015D4E4125.170e-2247.92helix-turn-helix transcriptional regulator n=1 Tax... [more]
UPI000D650E8C3.610e-2046.88helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI0019969BC21.550e-1852.69Helix-turn-helix transcriptional regulator n=1 Tax... [more]
UPI001A95D7DA6.610e-1850.55helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI0019BC40431.260e-1751.06Helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A7V7E9K2_9PROT1.370e-1750.00Helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A841GYG0_9BACT1.980e-1750.00Transcriptional regulator with XRE-family HTH doma... [more]
UPI0019030D304.950e-1751.55helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A2K2UA39_9ACTN1.620e-1648.19XRE family transcriptional regulator n=1 Tax=Enter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57880contigP-wetherbeei_contig57880:1..306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1235788.C802_02126
PFAMsHTH_3,HTH_31
Model size306
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.03e-16
EggNOG OGsCOG1396@1|root,COG1396@2|Bacteria,4NVIH@976|Bacteroidetes,2FT2C@200643|Bacteroidia,4ASAF@815|Bacteroidaceae
DescriptionXRE family transcriptional regulator
Cds size306
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186857.9718657-CDS-P-wetherbeei_contig57880:0..3061683186857.9718657-CDS-P-wetherbeei_contig57880:0..306Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57880 1..306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57880.1.1prot_P-wetherbeei_contig57880.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57880 1..306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57880.1.1

>prot_P-wetherbeei_contig57880.1.1 ID=prot_P-wetherbeei_contig57880.1.1|Name=mRNA_P-wetherbeei_contig57880.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp
IEFLLPAEITLSVAARCRTRRLALALSREELAARSGVTAASLKRFERTGS
IAFDSLVRLAIALDARDGFDLLFAKPVFQNLDDVLEQKPKRQRGRRTRKP
R*
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mRNA from alignment at P-wetherbeei_contig57880:1..306+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57880.1.1 ID=mRNA_P-wetherbeei_contig57880.1.1|Name=mRNA_P-wetherbeei_contig57880.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig57880:1..306+ (Phaeothamnion wetherbeei SAG_119_79)
ATTGAATTTCTATTGCCAGCGGAAATCACGCTATCGGTGGCGGCGCGCTG CCGCACGCGGCGGCTCGCGCTCGCGTTGTCGCGAGAGGAACTGGCGGCCC GCTCCGGCGTCACGGCGGCGAGCCTGAAACGATTCGAGCGCACCGGCAGC ATCGCCTTCGACAGCCTGGTCCGGCTGGCGATCGCGCTCGATGCACGCGA CGGATTCGACCTGCTGTTCGCCAAGCCGGTCTTTCAGAATCTCGATGACG TGCTTGAGCAGAAGCCCAAGCGTCAACGCGGCCGCCGCACCCGGAAGCCC AGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57880:1..306+

>mRNA_P-wetherbeei_contig57880.1.1 ID=mRNA_P-wetherbeei_contig57880.1.1|Name=mRNA_P-wetherbeei_contig57880.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig57880:1..306+ (Phaeothamnion wetherbeei SAG_119_79)
ATTGAATTTCTATTGCCAGCGGAAATCACGCTATCGGTGGCGGCGCGCTG
CCGCACGCGGCGGCTCGCGCTCGCGTTGTCGCGAGAGGAACTGGCGGCCC
GCTCCGGCGTCACGGCGGCGAGCCTGAAACGATTCGAGCGCACCGGCAGC
ATCGCCTTCGACAGCCTGGTCCGGCTGGCGATCGCGCTCGATGCACGCGA
CGGATTCGACCTGCTGTTCGCCAAGCCGGTCTTTCAGAATCTCGATGACG
TGCTTGAGCAGAAGCCCAAGCGTCAACGCGGCCGCCGCACCCGGAAGCCC
AGATGA
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