mRNA_P-wetherbeei_contig57866.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57866.1.1
Unique NamemRNA_P-wetherbeei_contig57866.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57866.1.1 vs. uniprot
Match: B8R8L6_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium 878 TaxID=548895 RepID=B8R8L6_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 1.180e-8
Identity = 58/95 (61.05%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    1 ASLFAYQLGVLATGQ-QQTFANKDIYAAAGAGSAYIVNGIATMLKVKAWGGXXXXXXXXXXXXXXXXXXXXXXXXXYAYAELNTFPGESLNRYVG 282
            A L  Y+ G+L  G   QTF NKDI A A AG+AY+VN IA +L VKAWGG XXXXXXXXXXXXXXXX        YAY+E+N  PGE+L  YVG
Sbjct:   71 AMLPIYEAGLLQGGVIPQTFLNKDITAVAAAGTAYVVNSIAAVLDVKAWGGGXXXXXXXXXXXXXXXXG-------YAYSEINVIPGETLLLYVG 158
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57866.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
B8R8L6_9BACT1.180e-861.05Uncharacterized protein n=1 Tax=uncultured bacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57866contigP-wetherbeei_contig57866:9..503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size495
Hectar predicted targeting categoryother localisation
Exons1
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186857.5894346-CDS-P-wetherbeei_contig57866:8..5031683186857.5894346-CDS-P-wetherbeei_contig57866:8..503Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57866 9..503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57866.1.1prot_P-wetherbeei_contig57866.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57866 9..503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57866.1.1

>prot_P-wetherbeei_contig57866.1.1 ID=prot_P-wetherbeei_contig57866.1.1|Name=mRNA_P-wetherbeei_contig57866.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
ASLFAYQLGVLATGQQQTFANKDIYAAAGAGSAYIVNGIATMLKVKAWGG
GGGGAENKQGPGSGTTVGGDGGGGGYAYAELNTFPGESLNRYVGGGGALG
GSTDGGAGGGGYSGMFRSSQALDIGAGGGGGGSSYGSSLAFGGDGGVGGG
SAGGAGIAGGTQYGS
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mRNA from alignment at P-wetherbeei_contig57866:9..503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57866.1.1 ID=mRNA_P-wetherbeei_contig57866.1.1|Name=mRNA_P-wetherbeei_contig57866.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig57866:9..503+ (Phaeothamnion wetherbeei SAG_119_79)
GCGTCCTTGTTCGCCTATCAACTGGGCGTACTCGCCACCGGCCAGCAGCA
GACCTTTGCCAACAAGGACATCTACGCAGCCGCGGGCGCCGGCAGCGCAT
ACATCGTCAACGGCATCGCGACGATGCTGAAGGTGAAAGCATGGGGTGGC
GGCGGGGGCGGGGCGGAGAATAAGCAGGGACCTGGGTCTGGTACAACCGT
CGGTGGAGACGGTGGAGGTGGCGGCTACGCATATGCAGAACTGAACACTT
TCCCCGGGGAGTCGCTTAACCGATACGTTGGTGGCGGTGGCGCACTTGGC
GGGTCTACCGACGGCGGCGCTGGCGGCGGCGGTTACTCAGGTATGTTCCG
TTCGAGCCAAGCACTCGATATCGGAGCAGGTGGTGGCGGAGGTGGATCTA
GCTACGGAAGCTCCCTGGCCTTTGGAGGAGATGGCGGCGTCGGAGGCGGG
AGCGCGGGCGGGGCAGGGATTGCCGGCGGCACTCAGTACGGAAGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57866:9..503+

>mRNA_P-wetherbeei_contig57866.1.1 ID=mRNA_P-wetherbeei_contig57866.1.1|Name=mRNA_P-wetherbeei_contig57866.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig57866:9..503+ (Phaeothamnion wetherbeei SAG_119_79)
GCGTCCTTGTTCGCCTATCAACTGGGCGTACTCGCCACCGGCCAGCAGCA
GACCTTTGCCAACAAGGACATCTACGCAGCCGCGGGCGCCGGCAGCGCAT
ACATCGTCAACGGCATCGCGACGATGCTGAAGGTGAAAGCATGGGGTGGC
GGCGGGGGCGGGGCGGAGAATAAGCAGGGACCTGGGTCTGGTACAACCGT
CGGTGGAGACGGTGGAGGTGGCGGCTACGCATATGCAGAACTGAACACTT
TCCCCGGGGAGTCGCTTAACCGATACGTTGGTGGCGGTGGCGCACTTGGC
GGGTCTACCGACGGCGGCGCTGGCGGCGGCGGTTACTCAGGTATGTTCCG
TTCGAGCCAAGCACTCGATATCGGAGCAGGTGGTGGCGGAGGTGGATCTA
GCTACGGAAGCTCCCTGGCCTTTGGAGGAGATGGCGGCGTCGGAGGCGGG
AGCGCGGGCGGGGCAGGGATTGCCGGCGGCACTCAGTACGGAAGT
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