mRNA_P-wetherbeei_contig5786.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5786.1.1
Unique NamemRNA_P-wetherbeei_contig5786.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5786.1.1 vs. uniprot
Match: A0A6H5KQ72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ72_9PHAE)

HSP 1 Score: 298 bits (764), Expect = 4.660e-95
Identity = 160/305 (52.46%), Postives = 208/305 (68.20%), Query Frame = 1
Query:    1 MDDEPPSLLVIVLDASLPLWRTREITRLHQDGNPSLKQPRVATFQETLEALLVFLESYLLMHRGNDVAFIAASRTGSRVLYPPPEFRAQGRSLPNGAVSSGDLQNCLVNGL-----RTLAADDGAAERGERPGTRLLPGPAMAKAMSQSLCYINRLKLEAAAVQA---RLLVLQGEADVAEHYNSIMNCIFSAQKAQVPVDCCVLAAGHSMFLQQAAYLSGGFYHSSSEPGLLPALLATFLPSASCRRYLSLRRQESIDFRAACFCHRRVVEVAYVCSVCLSVFCAFSPICSTCGTRAKPPQVVR 891
            MD+E PSLL+I+LDAS   W  RE  R  Q   P   + ++++FQ+T+EA L+F+ESYL+MHR N+V F+A +   S +++P P    + RSL  G+VS+ + QNCL +GL     R  AAD  AA  G+        G A+A ++S+ LCY+N+   E++++QA   R LVL G  DV E YNS+MN IFSAQKA V VDC VL    S FLQQAAYL+GG Y      GL   + ATFLPS SCR+YL LR Q+S+DFRAACFCH+RVV++AYVCSVCLSVFC FSP+C+TCGTRA P ++ R
Sbjct:    5 MDEEEPSLLLIILDASSAFWTKREAVRRRQKQRPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAAD--AAGGGDE-------GCALAGSLSKGLCYVNKKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGES-STFLQQAAYLTGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKR 299          
BLAST of mRNA_P-wetherbeei_contig5786.1.1 vs. uniprot
Match: A0A835ZC01_9STRA (Putative general transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC01_9STRA)

HSP 1 Score: 283 bits (723), Expect = 2.540e-89
Identity = 149/290 (51.38%), Postives = 192/290 (66.21%), Query Frame = 1
Query:    7 DEPPSLLVIVLDASLPLWRTREITRLHQDGNPSLKQPRVATFQETLEALLVFLESYLLMHRGNDVAFIAASRTGSRVLYPPPEFRAQGRSLPNGAVSSGDLQNCLVNGLRTLAADDGAAERGERPGTRLLPGPAMAKAMSQSLCYINRLKLEAAAVQARLLVLQGEADVAEHYNSIMNCIFSAQKAQVPVDCCVLAAGHSMFLQQAAYLSGGFYHSSSEPGLLPALLATFLPSASCRRYLSLRRQESIDFRAACFCHRRVVEVAYVCSVCLSVFCAFSPICSTCGTRAKP 876
            DE PSLLV+V DAS   W  ++   L   G+       V TFQ TLEA++VFL+SYLLMHR ND+A +A    GSR+++P P       SL  G VSS  +Q+C+V+GLR L +         +P         +AKA+SQ+LC+ +R   E  +VQ RLLV+Q   D  E YN++MNCIFSAQKAQ+PVDC +     S+F+QQAA ++GG Y    EP +L  LL   LPS +CR+YL  + QE++DFRAACFCHRR++E+AYVCSVCLSVFC FSPIC+TCGTRA P
Sbjct:    2 DEDPSLLVVVFDASQGAWAAKDA--LAAQGST------VGTFQGTLEAMMVFLQSYLLMHRRNDIAVVACGEAGSRMVFPTPAIEKDNVSLATGGVSSKRVQSCIVDGLRELMSASACGTASVQPAVS--SKAPIAKALSQALCFTHRKITENPSVQTRLLVVQAGPDAPESYNAVMNCIFSAQKAQIPVDC-LCVGPDSVFMQQAADVTGGVYCHVQEPNVLQQLLTLILPSQACRKYLRTKGQETVDFRAACFCHRRLIEIAYVCSVCLSVFCEFSPICATCGTRAVP 280          
BLAST of mRNA_P-wetherbeei_contig5786.1.1 vs. uniprot
Match: A0A8K1C5A8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5A8_PYTOL)

HSP 1 Score: 214 bits (546), Expect = 4.660e-62
Identity = 128/286 (44.76%), Postives = 170/286 (59.44%), Query Frame = 1
Query:   22 LLVIVLDASLPLWRTREITRLHQDGNPSLKQPRVATFQETLEALLVFLESYLLMHRGNDVAFIAASRTGSRVLYPPPEFRAQGRSLPNGAVSSGDLQNCLVNGLRTLAADDGAAERGERPGTRLLPGP-AMAKAMSQSLCYINRLKLEAAAVQARLLVLQGEADVAEHYNSIMNCIFSAQKAQVPVDCCVLAAGHSMFLQQAAYLSGGFYHSSSE-PGLLPALLATFLPSASCRRYLSLRRQESIDFRAACFCHRRVVEVAYVCSVCLSVFCAFSPICSTCGTRAK 873
            LLVIV+D +   W            N  L+  +  +FQ+ + + LVF+ SYLL+HR N +  IAA    S +LYP P   AQ       A  S  + N ++  L+ L+         E P     P   A+A ++S+SLC+INR   E A +  R+LV+Q   DV+EHY SIMN IFSAQK  V VD C+L+  HS F+QQAAYL+GG Y+  ++  GLL  LL+ +LP  S R+ L L  Q+S+DFRA CFCH+ VV  AYVC VCLS+FC F PICSTCG R++
Sbjct:   70 LLVIVIDTNPQQWF----------ANAKLQNAQTQSFQQLISSTLVFVNSYLLLHRNNRIVIIAAHAGRSEMLYPDP---AQ-NDTSGTAEQSLKVTNRVMEKLKALS---------EIPMDPSKPNATAIAASISRSLCFINRAITENADLSPRILVIQKSPDVSEHYISIMNGIFSAQKKNVAVDACILSREHSPFMQQAAYLTGGIYYKPNDHSGLLEYLLSIYLPDPSLRKLLKLPTQDSVDFRAMCFCHQEVVSTAYVCPVCLSLFCEFKPICSTCGIRSR 332          
BLAST of mRNA_P-wetherbeei_contig5786.1.1 vs. uniprot
Match: A0A5D6XQC8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQC8_9STRA)

HSP 1 Score: 209 bits (533), Expect = 1.200e-60
Identity = 124/286 (43.36%), Postives = 168/286 (58.74%), Query Frame = 1
Query:   22 LLVIVLDASLPLWRTREITRLHQDGNPSLKQPRVATFQETLEALLVFLESYLLMHRGNDVAFIAASRTGSRVLYPPPEFRAQGRSLPNGAVSSGDLQNCLVNGLRTLAADDGAAERGERPGTRLLPGP-AMAKAMSQSLCYINRLKLEAAAVQARLLVLQGEADVAEHYNSIMNCIFSAQKAQVPVDCCVLAAGHSMFLQQAAYLSGGFYHSSSE-PGLLPALLATFLPSASCRRYLSLRRQESIDFRAACFCHRRVVEVAYVCSVCLSVFCAFSPICSTCGTRAK 873
            LLV+VLD +   W      R   DG  S        FQ+ + + LVF+ +YLL+HR N +  +AA    + +LYP     A+ +     A  S  +   ++  LR L         G  P     P   A+A ++S++LC+INR   E + ++ R+LV+Q   DVA+HY SIMN IFSAQK  V VD CVLA+ HS FLQQAAYL+GG Y+   +  GLL  LL+ +LP  S R+ L L  Q+S+DFRA CFCH+ V+  A+VC VCLS+FC F PICSTCG R++
Sbjct:   29 LLVLVLDTNPRYWFAEGQAR---DGGDS-------AFQQLVASTLVFVNAYLLLHRSNRIVVVAAHAGRAEMLYPD----AEQQDTSGSAEQSAKVNTSVLQKLRAL---------GNAPIDASKPNATAIAASLSRALCFINRAIREQSDLRPRVLVIQKSPDVAQHYISIMNGIFSAQKKSVAVDACVLASEHSSFLQQAAYLTGGIYYKPIDHSGLLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKEVISTAFVCPVCLSLFCEFQPICSTCGIRSR 291          
BLAST of mRNA_P-wetherbeei_contig5786.1.1 vs. uniprot
Match: H3GBC5_PHYRM (Uncharacterized protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3GBC5_PHYRM)

HSP 1 Score: 209 bits (532), Expect = 1.300e-60
Identity = 125/285 (43.86%), Postives = 167/285 (58.60%), Query Frame = 1
Query:   22 LLVIVLDASLPLWRTREITRLHQDGNPSLKQPRVATFQETLEALLVFLESYLLMHRGNDVAFIAASRTGSRVLYPPPEFR-AQGRSLPNGAVSSGDLQNCLVNGLRTLAADDGAAERGERPGTRLLPGPAMAKAMSQSLCYINRLKLEAAAVQARLLVLQGEADVAEHYNSIMNCIFSAQKAQVPVDCCVLAAGHSMFLQQAAYLSGGFYHSSSEP-GLLPALLATFLPSASCRRYLSLRRQESIDFRAACFCHRRVVEVAYVCSVCLSVFCAFSPICSTCGTRA 870
            LLV+V+D S   W         Q G  + +    A  Q+ + + LVF+ SYLL+HR N +  IAA    S +LYP PE     G +     V++G +Q   +  L     D     R            A+A ++S++LC+INR   E   ++ R+LV+Q   DV+EHY +IMN IFSAQK  V VD C+LAA HS F+QQAAYL+GG Y+  + P GLL  L++ +LP  S R+ L L  Q+S+DFRA CFCHR V+  AYVC VCLS+FC F PICSTCG R+
Sbjct:   21 LLVLVVDTSPVHW-------FAQGGGAADR----AGLQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPDPEQEDTSGNAEQAAKVNAGVMQR--LQQLSDAPLDPAKPNR-----------TAIAASISRALCFINRAINEEPDLRPRILVVQKSPDVSEHYIAIMNGIFSAQKKSVAVDACILAAEHSSFMQQAAYLTGGIYYKPNGPSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCGIRS 281          
BLAST of mRNA_P-wetherbeei_contig5786.1.1 vs. uniprot
Match: K3WG36_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WG36_GLOUD)

HSP 1 Score: 207 bits (527), Expect = 1.070e-59
Identity = 125/286 (43.71%), Postives = 168/286 (58.74%), Query Frame = 1
Query:   22 LLVIVLDASLPLWRTREITRLHQDGNPSLKQPRVATFQETLEALLVFLESYLLMHRGNDVAFIAASRTGSRVLYPPPEFRAQGRSLPNGAVSSGDLQNCLVNGLRTLAADDGAAERGERPGTRLLPGP-AMAKAMSQSLCYINRLKLEAAAVQARLLVLQGEADVAEHYNSIMNCIFSAQKAQVPVDCCVLAAGHSMFLQQAAYLSGGFYHSSSE-PGLLPALLATFLPSASCRRYLSLRRQESIDFRAACFCHRRVVEVAYVCSVCLSVFCAFSPICSTCGTRAK 873
            LLV+V+D +   W   E       G P         FQ+ + + LVF+ SYLL+HR N +  IAA    + +LYP P    QG      A  S  +   ++  L+ L+         E P     P   A+A ++S++LC+INR   E + ++ R+LV+Q   DV+EHY SIMN IFSAQK  V VD CVLA   S FLQQAAYL+GG Y+  ++  GLL  LL+ +LP  S R+ L L  Q+S+DFRA CFCH+RV+  A+VC VCLS+FC F PICSTCG R++
Sbjct:   33 LLVLVVDTNPQYWFVNE---QRSGGGPQ-------AFQQLVASTLVFVNSYLLLHRSNRIVIIAAHAGKAEMLYPDPN---QG-DTSGSAEQSAKVNAKVMQKLQALS---------ELPVDPAKPNATAIAASISRALCFINRAINEQSDLRPRILVIQKSPDVSEHYISIMNGIFSAQKKGVAVDACVLARDQSSFLQQAAYLTGGIYYKPNDHSGLLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKRVISTAFVCPVCLSLFCEFQPICSTCGIRSR 295          
BLAST of mRNA_P-wetherbeei_contig5786.1.1 vs. uniprot
Match: A0A662YF30_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YF30_9STRA)

HSP 1 Score: 205 bits (522), Expect = 4.810e-59
Identity = 123/286 (43.01%), Postives = 167/286 (58.39%), Query Frame = 1
Query:   22 LLVIVLDASLPLWRTREITRLHQDGNPSLKQPRVATFQETLEALLVFLESYLLMHRGNDVAFIAASRTGSRVLYPPPEFRAQGRSLPNGAVSSGDLQNCLVN-GLRTLAADDGAAERGERPGTRLLPGPAMAKAMSQSLCYINRLKLEAAAVQARLLVLQGEADVAEHYNSIMNCIFSAQKAQVPVDCCVLAAGHSMFLQQAAYLSGGFYHSSSEPG-LLPALLATFLPSASCRRYLSLRRQESIDFRAACFCHRRVVEVAYVCSVCLSVFCAFSPICSTCGTRAK 873
            LLV+V+D +   W         Q G  S +      FQ+ + + LVF+ SYLL+HR N +  IAA    S +LYP P+             S    Q   VN G+     + G AE       R     A+A ++S+SLC+INR   +   ++ R+LV+Q   DV+EHY +IMN IFSAQK  V VD C+L+A HS F+QQAAYL+GG Y+  ++ G LL  L++ +LP  S R+ L L  Q+S+DFRA CFCHR V+  A+VC VCLS+FC F PICSTCG R++
Sbjct:   28 LLVLVIDTNPLHW-------FAQGGGTSDR----TAFQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPDPD---------QADTSGSAEQAAKVNAGVMRRLQELGDAELDPAKPNRT----AIAASLSRSLCFINRAINDQPDLRPRILVIQKAPDVSEHYIAIMNGIFSAQKKSVAVDACILSAEHSSFMQQAAYLTGGIYYKPNDAGGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAFVCPVCLSLFCEFRPICSTCGIRSR 289          
BLAST of mRNA_P-wetherbeei_contig5786.1.1 vs. uniprot
Match: W7U2D9_9STRA (General transcription factor iih n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2D9_9STRA)

HSP 1 Score: 207 bits (527), Expect = 1.030e-58
Identity = 143/395 (36.20%), Postives = 197/395 (49.87%), Query Frame = 1
Query:    1 MDDEPPSLLVIVLDASLPLWRTREITRLHQDGN-------PSLKQPRV-ATFQETLEALLVFLESYLLMHRGNDVAFIAASRTGSRVLYPPP--------EFRAQGR---------------------------------------------------SLPNGAVSSGDLQNCLVNGLRTLAAD------DGAAERGERPGTR-----------LLPGPAMAKAMSQSLCYINRLKLEAAAVQARLLVLQGEADVAEHYNSIMNCIFSAQKAQVPVDCCVLAAGHSM-----FLQQAAYLSGGFYHSSSEP-GLLPALLATFLPSASCRRYLSLRRQESIDFRAACFCHRRVVEVAYVCSVCLSVFCAFSPICSTCGTRAKPPQVVRRGR*SRAQ 915
            ++ E P++LVIV+DA    W+     R+H  G        PS + P++  TF   L+ L+VF+++YLL HR N VA +AA    S  LYPPP          +++G                                                    S P+G   S  + + +  GL+ L A       DG    G  PG R           L P    ++A+S+SLCYI R   E+ ++ AR+LVLQ  AD    YN+ MNC FSAQ++ VP+D  V ++  S+     FLQQA+Y++GG Y     P  LL   L  FLPS   R+ L L +QES+DFRAACFCHR+ VE AYVCSVCLS+FCAF+P C+TCGT A+P +   +G   R++
Sbjct:    6 LEAEEPNILVIVIDADPASWQ-----RIHSAGELARPQDRPSSEAPQIFMTFPHLLDTLMVFIDAYLLTHRANRVAVVAALHDKSDFLYPPPVPAXXXXXXXKSEGPTKAPVIKLEKMVYEAACDQHATVAAVEGGQDGVDALKTNGATSKGPPLAPVSPPSGGSESERVSHAVTRGLQRLLAPTSAVALDGPEVSG--PGARXXXXXXXXXXSLRPVSRTSQALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCGTPARPLKGSGKGAGRRSR 393          
BLAST of mRNA_P-wetherbeei_contig5786.1.1 vs. uniprot
Match: A0A3M6VU71_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VU71_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.970e-58
Identity = 119/295 (40.34%), Postives = 170/295 (57.63%), Query Frame = 1
Query:   22 LLVIVLDASLPLWRTREITRLHQDGNPSLKQPRVATFQETLEALLVFLESYLLMHRGNDVAFIAASRTGSRVLYPPPEFRAQGRSLPNGAVSSGDLQNCLVNGLRTLAADDGAAERGERPGTRLLPGPAMAKAMSQSLCYINRLKLEAAAVQARLLVLQGEADVAEHYNSIMNCIFSAQKAQVPVDCCVLAAGHSMFLQQAAYLSGGFYHSSSE-PGLLPALLATFLPSASCRRYLSLRRQESIDFRAACFCHRRVVEVAYVCSVCLSVFCAFSPICSTCGTRAK-PPQVVRRGR 900
            LLV+V+D +   W  +        GN +  +     FQ+ + + LVF+ SYLL+HR N +  IAA    S +LYP P            A  S  +   ++  L+ L+       +  R         A+A ++S++LC+INR   E   ++ R+LV+Q   DV+EHY +IMN IFSAQK  V VD C+LA+  S F+QQAAYL+GG Y+  ++  GLL  L++ +LP  S R+ L L  Q+S+DFRA CFCHR V+  A+VC VCLS+FC F PICSTCG R+   P   ++G+
Sbjct:   18 LLVLVIDTNPTNWFAQ--------GNEAADR---GNFQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPNPAHD----DTSGSAEQSAKVNAVVMQRLQELSDTPMDCTKPNRT--------AIAASLSRALCFINRAMNEEPDLRPRILVVQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILASEQSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAFVCPVCLSLFCQFQPICSTCGIRSHIEPMGTKKGK 289          
BLAST of mRNA_P-wetherbeei_contig5786.1.1 vs. uniprot
Match: A0A421GZV4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GZV4_9STRA)

HSP 1 Score: 203 bits (516), Expect = 2.940e-58
Identity = 121/285 (42.46%), Postives = 165/285 (57.89%), Query Frame = 1
Query:   22 LLVIVLDASLPLWRTREITRLHQDGNPSLKQPRVATFQETLEALLVFLESYLLMHRGNDVAFIAASRTGSRVLYPPPEFRAQGRSLPNGA-VSSGDLQNCLVNGLRTLAADDGAAERGERPGTRLLPGPAMAKAMSQSLCYINRLKLEAAAVQARLLVLQGEADVAEHYNSIMNCIFSAQKAQVPVDCCVLAAGHSMFLQQAAYLSGGFYHSSSE-PGLLPALLATFLPSASCRRYLSLRRQESIDFRAACFCHRRVVEVAYVCSVCLSVFCAFSPICSTCGTRA 870
            LLV+V+D +   W         +   P+ +    A  Q+ + + LVF+ SYLL+HR N +  IAA    S +LYP P       S    A V++G +Q   +  L     D     R            A+A A+S+SLC+INR   E   ++ R+LV+Q   D++EHY +IMN IFSAQK  V VD C+LA+  S F+QQAAYL+GG Y+  ++  GLL  L++ +LP  S R+ L L  Q+S+DFRA CFCHR V+  AYVC VCLS+FC F PICSTCG R+
Sbjct:   20 LLVLVIDTNPVHW-------FAEGAGPADR----AGLQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPDPNQEDTSGSAEQAAKVNAGVMQR--LQELSDAPLDPAKPNR-----------TAIAAALSRSLCFINRAINEEPELKPRILVIQKSPDMSEHYIAIMNGIFSAQKRSVAVDACILASEQSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSTRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCGIRS 280          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5786.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQ72_9PHAE4.660e-9552.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZC01_9STRA2.540e-8951.38Putative general transcription factor IIH subunit ... [more]
A0A8K1C5A8_PYTOL4.660e-6244.76Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XQC8_9STRA1.200e-6043.36Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
H3GBC5_PHYRM1.300e-6043.86Uncharacterized protein n=17 Tax=Phytophthora TaxI... [more]
K3WG36_GLOUD1.070e-5943.71Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662YF30_9STRA4.810e-5943.01Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
W7U2D9_9STRA1.030e-5836.20General transcription factor iih n=3 Tax=Monodopsi... [more]
A0A3M6VU71_9STRA1.970e-5840.34Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A421GZV4_9STRA2.940e-5842.46Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5786contigP-wetherbeei_contig5786:551..2390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42099.EPrPV00000021447
PFAMsTfb4
Model size1406
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.51e-59
EggNOG OGsCOG0159@1|root,COG5242@1|root,KOG2487@2759|Eukaryota,KOG4175@2759|Eukaryota,1MEXT@121069|Pythiales
Ec32 ortholog descriptionTFIIH subunit Tfb4/p34
Ec32 orthologEc-19_002710.1
DescriptionGeneral transcription factor IIH subunit. Source PGD
Cds size903
COG categoryKL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186857.3982577-CDS-P-wetherbeei_contig5786:550..6701683186857.3982577-CDS-P-wetherbeei_contig5786:550..670Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5786 551..670 +
1683186857.411198-CDS-P-wetherbeei_contig5786:794..13111683186857.411198-CDS-P-wetherbeei_contig5786:794..1311Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5786 795..1311 +
1683186857.4220173-CDS-P-wetherbeei_contig5786:1621..18871683186857.4220173-CDS-P-wetherbeei_contig5786:1621..1887Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5786 1622..1887 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186857.4337177-UTR-P-wetherbeei_contig5786:1887..23901683186857.4337177-UTR-P-wetherbeei_contig5786:1887..2390Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5786 1888..2390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5786.1.1prot_P-wetherbeei_contig5786.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5786 551..1887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5786.1.1

>prot_P-wetherbeei_contig5786.1.1 ID=prot_P-wetherbeei_contig5786.1.1|Name=mRNA_P-wetherbeei_contig5786.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=301bp
MDDEPPSLLVIVLDASLPLWRTREITRLHQDGNPSLKQPRVATFQETLEA
LLVFLESYLLMHRGNDVAFIAASRTGSRVLYPPPEFRAQGRSLPNGAVSS
GDLQNCLVNGLRTLAADDGAAERGERPGTRLLPGPAMAKAMSQSLCYINR
LKLEAAAVQARLLVLQGEADVAEHYNSIMNCIFSAQKAQVPVDCCVLAAG
HSMFLQQAAYLSGGFYHSSSEPGLLPALLATFLPSASCRRYLSLRRQESI
DFRAACFCHRRVVEVAYVCSVCLSVFCAFSPICSTCGTRAKPPQVVRRGR
*
back to top

mRNA from alignment at P-wetherbeei_contig5786:551..2390+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5786.1.1 ID=mRNA_P-wetherbeei_contig5786.1.1|Name=mRNA_P-wetherbeei_contig5786.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1840bp|location=Sequence derived from alignment at P-wetherbeei_contig5786:551..2390+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGATGAGCCGCCGAGCTTGCTCGTTATCGTGCTCGATGCCTCGCT GCCACTTTGGCGCACGCGAGAGATCACTCGCCTGCACCAGGATGGAAATC CAAGCCTGAAGCAACCTCGGGTGAGAGGAGCAGCTATTTTTCGCCGTGTT ATTATCTCTGTTTTGTCAATTTGCAGTCTTACAAGCAGTACCCTTCGCCA CGACGTTGCAAACGACTCTTGTTCAAGTCGATACCTACTGCCAGGTCGCC ACTTTTCAAGAAACTCTGGAGGCCTTGTTGGTCTTTCTCGAGAGCTATCT CCTCATGCACCGTGGCAACGACGTTGCCTTTATCGCCGCGTCTCGCACGG GCAGCCGCGTGCTATATCCGCCGCCGGAGTTCCGTGCGCAAGGCCGCAGC CTGCCCAACGGAGCCGTGAGCAGCGGTGACTTGCAAAACTGCCTTGTCAA CGGGCTGCGGACGCTCGCCGCGGACGACGGCGCCGCCGAGCGCGGCGAGC GGCCGGGAACGCGGCTCCTACCGGGCCCCGCCATGGCCAAGGCCATGTCG CAGAGCCTCTGCTACATCAACCGCCTCAAGCTGGAGGCGGCGGCAGTGCA GGCCCGACTCCTAGTGCTGCAGGGGGAGGCGGATGTGGCAGAGCACTACA ACTCTATCATGAACTGCATCTTCTCCGCGCAGAAGGCGCAGGTGCCCGTA GACTGCTGCGTCCTGGCGGCGGGCCACTCCATGTTCCTGCAGCAGGCTGC CTACTTGTCAGGTCAGTTCCAAAATATCATCGTCATCACTTGTTACCTGG TGCTGCGCTTTTTGGCGAGAAACCGGCGCTTGCCGCAACAAGTCCTGCAT AGGGGTTCGCCTCTGCATAGTTTCTATCGTGATATGCTGCCAGGGCTGCG ATTGGTTCTCCTCGCCTCACTCAGAGAGTAATGTATCATCAAACTGATTC TATATTGGGCAAAGCAATGCAAGCGACCGTATTTCCAAATCCCATCTACA CTGCTGCAGCGCTGGCATCAAGCCAATGTCTCTTCCTGTTTGCACTGCGG GCTCGTAATAATGGCTGACAGGCGGCTTCTACCACTCGTCGTCCGAGCCC GGGCTCCTCCCGGCGCTGCTGGCAACCTTCCTGCCGAGCGCCAGCTGCCG CCGCTACCTCAGCCTGCGGCGGCAGGAGAGCATCGACTTCCGCGCCGCCT GCTTCTGCCACCGCCGCGTCGTCGAGGTAGCCTACGTGTGCTCTGTCTGC CTGTCCGTCTTCTGCGCCTTTTCGCCCATCTGTTCCACGTGTGGTACGCG CGCCAAGCCGCCGCAGGTCGTGCGGCGGGGCAGGTAATCCCGAGCGCAGT AGGGACTCCATACCTGGTTTGGTTGGAAAGGAGCTGGCTGTTTTGGTACC GGCGGCCACGACGTGTGGGTTGCGCGTTTATCGGGGACCCCCCGGCGGCG GCGGCTGCGGCCGCTGCAGGCAACGGCGACGGCTGAGCTGGTGGCTGCTG CGGCGTCTGAGGCTGGTGGTGATCGCTGCTTCGATGGCGGTCTGCTGCTG TGACGCATGAGGCTGGAGACCACGGCCGCCGCTGCGACGGCGGCAGCGAC GATTGATGCGGCAGTGGCAGCTCCGGCGGCGGCGGCGGCAGCAGCAGGTG CGATGATCACATAACAGGGCAATGAATGCATTTATTTAGGGTCAGCGCTT TCTGTAGTACCGGTGCTTGCTGTGTCTTCCGACAGATCGGAAGGGAAAAT GTGGAAATAAGATTCCCGCACGCAGAAACACATAGACCAGATCCAACGAC AACTAGACGATAATCAACACTAGCCCTTTGGCCCGACCTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5786:551..2390+

>mRNA_P-wetherbeei_contig5786.1.1 ID=mRNA_P-wetherbeei_contig5786.1.1|Name=mRNA_P-wetherbeei_contig5786.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=903bp|location=Sequence derived from alignment at P-wetherbeei_contig5786:551..2390+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGATGAGCCGCCGAGCTTGCTCGTTATCGTGCTCGATGCCTCGCT
GCCACTTTGGCGCACGCGAGAGATCACTCGCCTGCACCAGGATGGAAATC
CAAGCCTGAAGCAACCTCGGGTCGCCACTTTTCAAGAAACTCTGGAGGCC
TTGTTGGTCTTTCTCGAGAGCTATCTCCTCATGCACCGTGGCAACGACGT
TGCCTTTATCGCCGCGTCTCGCACGGGCAGCCGCGTGCTATATCCGCCGC
CGGAGTTCCGTGCGCAAGGCCGCAGCCTGCCCAACGGAGCCGTGAGCAGC
GGTGACTTGCAAAACTGCCTTGTCAACGGGCTGCGGACGCTCGCCGCGGA
CGACGGCGCCGCCGAGCGCGGCGAGCGGCCGGGAACGCGGCTCCTACCGG
GCCCCGCCATGGCCAAGGCCATGTCGCAGAGCCTCTGCTACATCAACCGC
CTCAAGCTGGAGGCGGCGGCAGTGCAGGCCCGACTCCTAGTGCTGCAGGG
GGAGGCGGATGTGGCAGAGCACTACAACTCTATCATGAACTGCATCTTCT
CCGCGCAGAAGGCGCAGGTGCCCGTAGACTGCTGCGTCCTGGCGGCGGGC
CACTCCATGTTCCTGCAGCAGGCTGCCTACTTGTCAGGCGGCTTCTACCA
CTCGTCGTCCGAGCCCGGGCTCCTCCCGGCGCTGCTGGCAACCTTCCTGC
CGAGCGCCAGCTGCCGCCGCTACCTCAGCCTGCGGCGGCAGGAGAGCATC
GACTTCCGCGCCGCCTGCTTCTGCCACCGCCGCGTCGTCGAGGTAGCCTA
CGTGTGCTCTGTCTGCCTGTCCGTCTTCTGCGCCTTTTCGCCCATCTGTT
CCACGTGTGGTACGCGCGCCAAGCCGCCGCAGGTCGTGCGGCGGGGCAGG
TAA
back to top