mRNA_P-wetherbeei_contig5786.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5786.3.1
Unique NamemRNA_P-wetherbeei_contig5786.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5786.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5786contigP-wetherbeei_contig5786:2553..3331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size549
Hectar predicted targeting categoryother localisation
Exons2
Cds size375
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186857.322679-UTR-P-wetherbeei_contig5786:2552..27241683186857.322679-UTR-P-wetherbeei_contig5786:2552..2724Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5786 2553..2724 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186857.3338165-CDS-P-wetherbeei_contig5786:2724..27311683186857.3338165-CDS-P-wetherbeei_contig5786:2724..2731Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5786 2725..2731 -
1683186857.3536215-CDS-P-wetherbeei_contig5786:2963..33311683186857.3536215-CDS-P-wetherbeei_contig5786:2963..3331Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5786 2964..3331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5786.3.1prot_P-wetherbeei_contig5786.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5786 2725..3331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5786.3.1

>prot_P-wetherbeei_contig5786.3.1 ID=prot_P-wetherbeei_contig5786.3.1|Name=mRNA_P-wetherbeei_contig5786.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
WRGRAARGPRRHRRRPARRRRRAVSLAGRGGSAGPGGGAGNGAGRGGAAA
VGAAGGGVITPIVRSAAAAAGGGTAAADGPGRDGARRPRAHGGGATARDS
DGRRPRARAVHGSSCRGVSGGFRL*
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mRNA from alignment at P-wetherbeei_contig5786:2553..3331-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5786.3.1 ID=mRNA_P-wetherbeei_contig5786.3.1|Name=mRNA_P-wetherbeei_contig5786.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=779bp|location=Sequence derived from alignment at P-wetherbeei_contig5786:2553..3331- (Phaeothamnion wetherbeei SAG_119_79)
TGGCGAGGACGCGCTGCGCGAGGCCCTCGCCGCCACCGACGCCGCCCTGC
GCGACGGCGACGTCGCGCGGTCAGCCTTGCGGGACGGGGCGGCAGCGCGG
GCCCGGGAGGCGGCGCTGGTAACGGAGCAGGGCGCGGCGGCGCGGCAGCT
GTGGGAGCGGCGGGCGGAGGAGTTATCACGCCGATTGTCCGAAGCGCGGC
AGCGGCAGCTGGCGGCGGAACGGCGGCGGCGGATGGACCTGGAAGGGATG
GGGCGAGACGTCCACGCGCTCACGGTGGCGGTGCGACGGCTCGAGACAGT
GACGGGCGTCGGCCACGCGCTCGCGCGGTACACGGCAGCTCCTGCCGCGG
CGTCAGCGGCGGTTTCCGGTGTGTAATTTTTTCCGTGCATTTTTTACCTT
TCGCCTGTCTATCTTTTGTTTTCCGAACCCGCAAGCTCATCTGTCACGAC
TGATTGCCATTCTCTGCCGCATTACTGCCCGGATCAGCGACATGTTGCAG
TGAAAACGCAACAGTGACAACTGCCGAACGACCTCATCGTGCTCTGGCAA
TAAGACGATGACAATTAGCCTGCTCTGCCCATCTTTCCGCGCCGACACAG
GCTGTAACGACGGCGGTGGCGGCGGCAGAGGAAAACAGGCGGTGGGTGAT
GAGGACGTGTCGGAGCAGCTGGAGGAGGAGGTGAAGCTCCTCCGGCGCCG
CGTCCGCGCCCTCAGCCAAGGGCTGGCTGCTCCCAGAGTGGGCAGCCCTC
CAGCTTACTGAATAATATTATCAAATGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5786:2553..3331-

>mRNA_P-wetherbeei_contig5786.3.1 ID=mRNA_P-wetherbeei_contig5786.3.1|Name=mRNA_P-wetherbeei_contig5786.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig5786:2553..3331- (Phaeothamnion wetherbeei SAG_119_79)
TGGCGAGGACGCGCTGCGCGAGGCCCTCGCCGCCACCGACGCCGCCCTGC
GCGACGGCGACGTCGCGCGGTCAGCCTTGCGGGACGGGGCGGCAGCGCGG
GCCCGGGAGGCGGCGCTGGTAACGGAGCAGGGCGCGGCGGCGCGGCAGCT
GTGGGAGCGGCGGGCGGAGGAGTTATCACGCCGATTGTCCGAAGCGCGGC
AGCGGCAGCTGGCGGCGGAACGGCGGCGGCGGATGGACCTGGAAGGGATG
GGGCGAGACGTCCACGCGCTCACGGTGGCGGTGCGACGGCTCGAGACAGT
GACGGGCGTCGGCCACGCGCTCGCGCGGTACACGGCAGCTCCTGCCGCGG
CGTCAGCGGCGGTTTCCGGCTGTAA
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