mRNA_P-wetherbeei_contig57813.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57813.1.1
Unique NamemRNA_P-wetherbeei_contig57813.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig57813.1.1 vs. uniprot
Match: A0A7Z9PUH2_9BACT (Tetratricopeptide repeat protein (Fragment) n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PUH2_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 1.160e-7
Identity = 24/63 (38.10%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    4 SRQGLIRGTQRMWDQYEITEQDSVFKFYHIGIAQLVLGKTQACIDSMSKVLNMNPNFEKALYY 192
            +R   IR     W  Y+   ++++FK+Y++G+A ++LG       +  KV++MNPNFEK LYY
Sbjct:  115 TRYQAIREAAASWKDYKEKREENIFKYYNLGVAAMILGGFDDARKAFEKVVSMNPNFEKCLYY 177
[Close]
BLAST of mRNA_P-wetherbeei_contig57813.1.1 vs. uniprot
Match: A0A7X7UKS9_9BACT (Tetratricopeptide repeat protein n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7X7UKS9_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 2.950e-5
Identity = 40/128 (31.25%), Postives = 61/128 (47.66%), Query Frame = 1 
Query:   91 IGIAQLVLGKTQACIDSMSKVLNMNPNFEKALYYRSRSYRMLGMLREAGRDLQKHLELRPRDPYANYALGICLMEVGRTPQAIACFNKALNDKPGYFKAHLQVAQAYLTLTQYEQAHESLKKALQISP 474
            +G A L LG+     ++ +K L + P F  AL   +R Y +L    +      K +  +P +P A Y      ME G T  A+  + KA+  KP YF AH+Q+   Y    Q + A    K AL+++P
Sbjct:   93 LGDAYLNLGQPVLAENAYAKALKLQPTFNDALIGMARYYLVLKNHDQTLALTAKAIINQPFNPSAYYLAAWSFMEKGDTLSALKNYLKAIEQKPDYFDAHVQLGILY-GKKQPQMAEAFFKNALRLNP 219
[Close]
BLAST of mRNA_P-wetherbeei_contig57813.1.1 vs. uniprot
Match: A0A7Y3R8V6_9FLAO (Tetratricopeptide repeat protein n=2 Tax=unclassified Flavobacterium TaxID=196869 RepID=A0A7Y3R8V6_9FLAO)

HSP 1 Score: 51.6 bits (122), Expect = 8.810e-5
Identity = 43/170 (25.29%), Postives = 75/170 (44.12%), Query Frame = 1 
Query:    1 YSRQGLIRGTQRMWDQYEITEQDSVFKFYHIGIAQLVLGKTQACID---------SMSKVLNMNPNFEKALYYRSRSYRMLGMLREAGRDLQKHLELRPRDPYANYALGICLMEVGRTPQAIACFNKALNDKPGYFKAHLQV---AQAYLTLTQYEQAHESLKKALQISP 474
            YS +G +    R   Q+E+   D    +      Q++  +    +D           + ++N+ P F    + R+ SY M    +EA RD++K LEL P+D  +   L     ++    +A+A + + L D P     H+     A  Y  L Q+++A   + KAL+I P
Sbjct:   58 YSNRGHVY---RQQGQFELAVSDYTQSYALYPNIQVLYARANTYMDMEQYEKAQADYTAIINLEPTFSDIYFDRAYSYIMQKKYQEAMRDMEKQLELTPKDFKSLANLINLKKQLDLKEEALADYKRLLKDFPDAEDLHIVYNNRANLYSDLKQFDKALADINKALEIKP 224
[Close]
BLAST of mRNA_P-wetherbeei_contig57813.1.1 vs. uniprot
Match: A0A1Q8BG86_9CREN (Uncharacterized protein n=1 Tax=Crenarchaeota archaeon 13_1_20CM_2_51_8 TaxID=1805093 RepID=A0A1Q8BG86_9CREN)

HSP 1 Score: 51.6 bits (122), Expect = 9.530e-5
Identity = 33/106 (31.13%), Postives = 54/106 (50.94%), Query Frame = 1 
Query:  142 MSKVLNMNPNFEKALYYRSRSYRMLGMLREAGRDLQKHLELRPRDPYANYALGICLMEVGRTPQAIACFNKALNDKPGYFKAHLQVAQAYLTLTQYEQAHESLKKA 459
            + +V+ + PN+  A ++ S     +G   EA    ++ LEL P        +GI L+ +GRT +AIA F K L   PG+   ++  A A   +  ++QA E  +KA
Sbjct:  151 LKRVIALKPNYATAYHWYSNVLGGMGRYEEAVEFEKRALELDPYSSIFGQGIGIHLLLMGRTREAIAQFEKTLEIDPGFASVYIWKAWANERVGNFDQAIEDAEKA 256
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57813.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7Z9PUH2_9BACT1.160e-738.10Tetratricopeptide repeat protein (Fragment) n=1 Ta... [more]
A0A7X7UKS9_9BACT2.950e-531.25Tetratricopeptide repeat protein n=1 Tax=Bacteroid... [more]
A0A7Y3R8V6_9FLAO8.810e-525.29Tetratricopeptide repeat protein n=2 Tax=unclassif... [more]
A0A1Q8BG86_9CREN9.530e-531.13Uncharacterized protein n=1 Tax=Crenarchaeota arch... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57813contigP-wetherbeei_contig57813:17..493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog644282.Deba_0507
PFAMsGGDEF,TPR_11,TPR_16,TPR_19,TPR_2,TPR_4,TPR_7,TPR_8
Model size477
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.3e-08
EggNOG OGsCOG0457@1|root,COG2199@1|root,COG0457@2|Bacteria,COG2199@2|Bacteria,1RDNA@1224|Proteobacteria,42Q5I@68525|delta/epsilon subdivisions,2WIX0@28221|Deltaproteobacteria
DescriptionPFAM GGDEF domain containing protein
Cds size477
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186856.936764-CDS-P-wetherbeei_contig57813:16..4931683186856.936764-CDS-P-wetherbeei_contig57813:16..493Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57813 17..493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57813.1.1prot_P-wetherbeei_contig57813.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57813 17..493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57813.1.1

>prot_P-wetherbeei_contig57813.1.1 ID=prot_P-wetherbeei_contig57813.1.1|Name=mRNA_P-wetherbeei_contig57813.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=159bp
YSRQGLIRGTQRMWDQYEITEQDSVFKFYHIGIAQLVLGKTQACIDSMSK
VLNMNPNFEKALYYRSRSYRMLGMLREAGRDLQKHLELRPRDPYANYALG
ICLMEVGRTPQAIACFNKALNDKPGYFKAHLQVAQAYLTLTQYEQAHESL
KKALQISPQ
back to top

mRNA from alignment at P-wetherbeei_contig57813:17..493-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57813.1.1 ID=mRNA_P-wetherbeei_contig57813.1.1|Name=mRNA_P-wetherbeei_contig57813.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig57813:17..493- (Phaeothamnion wetherbeei SAG_119_79)
TACTCGCGCCAGGGTTTGATCCGTGGCACCCAGAGAATGTGGGACCAATA
TGAGATCACCGAGCAGGACTCGGTCTTCAAGTTTTACCACATCGGAATTG
CCCAACTTGTCCTCGGCAAGACTCAGGCCTGCATTGATTCGATGAGCAAA
GTTCTCAATATGAACCCCAACTTCGAAAAGGCCCTCTATTATCGAAGCCG
CAGCTATCGAATGCTGGGGATGCTGCGCGAGGCCGGCCGCGATCTCCAAA
AACATCTCGAGCTCCGTCCGCGTGATCCTTACGCGAATTACGCGCTGGGA
ATTTGCTTGATGGAGGTGGGGCGTACCCCTCAGGCCATCGCCTGCTTCAA
TAAGGCCCTGAACGATAAGCCCGGATACTTCAAGGCCCACCTTCAAGTGG
CTCAGGCTTACCTCACGCTGACGCAGTACGAGCAGGCCCACGAGTCACTC
AAAAAAGCTCTGCAAATCAGCCCCCAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig57813:17..493-

>mRNA_P-wetherbeei_contig57813.1.1 ID=mRNA_P-wetherbeei_contig57813.1.1|Name=mRNA_P-wetherbeei_contig57813.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig57813:17..493- (Phaeothamnion wetherbeei SAG_119_79)
TACTCGCGCCAGGGTTTGATCCGTGGCACCCAGAGAATGTGGGACCAATA
TGAGATCACCGAGCAGGACTCGGTCTTCAAGTTTTACCACATCGGAATTG
CCCAACTTGTCCTCGGCAAGACTCAGGCCTGCATTGATTCGATGAGCAAA
GTTCTCAATATGAACCCCAACTTCGAAAAGGCCCTCTATTATCGAAGCCG
CAGCTATCGAATGCTGGGGATGCTGCGCGAGGCCGGCCGCGATCTCCAAA
AACATCTCGAGCTCCGTCCGCGTGATCCTTACGCGAATTACGCGCTGGGA
ATTTGCTTGATGGAGGTGGGGCGTACCCCTCAGGCCATCGCCTGCTTCAA
TAAGGCCCTGAACGATAAGCCCGGATACTTCAAGGCCCACCTTCAAGTGG
CTCAGGCTTACCTCACGCTGACGCAGTACGAGCAGGCCCACGAGTCACTC
AAAAAAGCTCTGCAAATCAGCCCCCAA
back to top