mRNA_P-wetherbeei_contig5781.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5781.1.1
Unique NamemRNA_P-wetherbeei_contig5781.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5781.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5781contigP-wetherbeei_contig5781:485..2201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1550
Hectar predicted targeting categoryother localisation
Exons2
Cds size1224
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186856.8781483-CDS-P-wetherbeei_contig5781:484..17081683186856.8781483-CDS-P-wetherbeei_contig5781:484..1708Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5781 485..1708 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186856.8963175-UTR-P-wetherbeei_contig5781:1708..17321683186856.8963175-UTR-P-wetherbeei_contig5781:1708..1732Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5781 1709..1732 -
1683186856.907214-UTR-P-wetherbeei_contig5781:1899..22011683186856.907214-UTR-P-wetherbeei_contig5781:1899..2201Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5781 1900..2201 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5781.1.1prot_P-wetherbeei_contig5781.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5781 485..1708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5781.1.1

>prot_P-wetherbeei_contig5781.1.1 ID=prot_P-wetherbeei_contig5781.1.1|Name=mRNA_P-wetherbeei_contig5781.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=408bp
MVEYKCAEVIDIGLYLQELLRSTKELHPSAAEERAALRSAFHATVQECGA
AAAAVRRQLTAATAAETAAEEAEAAEKCRRPPAAADAIEAKADSAAGMCA
EADLAAAAEAVPRADEMVLAAAKAAETAPAVEFAAAGAQVPPAAEPMAVP
SADAAAADAAVADAAAAGAAAADAAAATLAATTSVDAAAVAASVAVAVAA
IAAEDDDAPAAVAAVSTQPAAEVVVSGEAAAVETVAVLPPIVTEPTAGAV
VTDCATVFGAECISLVTAVKKPTEETAIVTVKDLDLVPEAAAVDVIDADT
SGGAAVDAAGDADNDSGVAFLLPLLPPPRLKRFCHSANAAEPIAAFSSAG
VAGGRHRRSEPTAAEKAGAAVAAAAESSAAISAAEVPAKEAATALAAEAE
EDNEMPDE
back to top

mRNA from alignment at P-wetherbeei_contig5781:485..2201-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5781.1.1 ID=mRNA_P-wetherbeei_contig5781.1.1|Name=mRNA_P-wetherbeei_contig5781.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1717bp|location=Sequence derived from alignment at P-wetherbeei_contig5781:485..2201- (Phaeothamnion wetherbeei SAG_119_79)
AGGAGCCCGAGCCGCTCGTTGAACTACTGCCAACGGAATTCAAATATTTG
AACAAAGGGGGACAGAAAAAAGCCGATTTCCACAGAGGTCAGACAAGATG
AAGAGCCCCGCACGTTCGCGCTTTAGCAGCTGCAGCAGTGACTCTAGCAT
TGGAAGCTTCGGCTCCCTCAACTCCACCAACTTCCAACGCGCTTCGCAGG
AGCGGATCCTTGGGCAGATGGCGAACCTGGCGCGTCATTCGTACGAGGGC
GTCGCGTGGCGTGACGCCGCGACGCTTGCGGAACTGCAGGATTCGCTCCA
GGCTTCATTCCACAGGTTTAAAACGTCGTTCCGCCTTGCGCTGCTCGCTG
CTATTCCCTTCCAGTTTCTTATGCACCGCAACTCCGAGGTGCCATTCCCT
TCCTCGCTCTCAGCTTCATCCTTCCCCGTCCTTCCCCCCTCCACAACCTT
CCCTTTGCGCGCCTGCAGCTGCGGCCCCGAGGAGGATGACGAGATGGTCG
AGTACAAGTGCGCCGAGGTCATCGACATCGGCCTTTACCTGCAGGAGCTG
CTTCGCTCCACCAAGGAGCTGCACCCGTCGGCGGCGGAGGAGCGGGCGGC
CCTCCGCTCGGCATTCCATGCAACCGTTCAGGAGTGCGGTGCCGCCGCCG
CTGCCGTCCGGCGCCAGCTCACCGCCGCCACCGCTGCAGAGACCGCTGCA
GAAGAGGCGGAGGCCGCCGAGAAGTGTCGGAGGCCGCCGGCCGCCGCCGA
CGCTATAGAGGCAAAGGCAGATTCAGCAGCCGGTATGTGTGCAGAGGCAG
ATCTAGCGGCGGCCGCAGAGGCGGTGCCGCGCGCGGATGAGATGGTTCTT
GCGGCGGCTAAGGCGGCCGAGACTGCGCCAGCTGTTGAGTTCGCCGCGGC
AGGCGCACAGGTGCCGCCGGCGGCCGAGCCAATGGCCGTTCCGTCTGCCG
ACGCTGCGGCTGCCGACGCTGCGGTTGCCGATGCTGCGGCTGCCGGCGCT
GCGGCTGCCGACGCTGCGGCTGCTACTCTCGCTGCTACTACGTCTGTCGA
CGCGGCTGCGGTCGCGGCTTCTGTGGCGGTGGCCGTGGCGGCGATTGCGG
CCGAGGACGACGATGCTCCCGCCGCTGTCGCTGCCGTCTCGACGCAGCCC
GCCGCGGAAGTCGTTGTCAGCGGCGAGGCGGCTGCCGTAGAGACGGTTGC
TGTACTGCCTCCTATAGTGACCGAGCCGACCGCCGGCGCCGTCGTGACCG
ATTGCGCGACTGTTTTCGGCGCTGAATGCATCTCGCTAGTGACAGCCGTC
AAGAAACCGACGGAGGAAACCGCTATCGTCACTGTAAAAGATCTTGACTT
GGTTCCCGAAGCGGCGGCGGTGGATGTTATCGACGCTGACACCTCCGGTG
GCGCAGCAGTCGATGCCGCCGGCGACGCCGACAACGACTCCGGCGTCGCG
TTCTTGCTGCCGCTGCTGCCGCCACCGCGCCTTAAGCGCTTCTGTCACAG
CGCCAACGCTGCCGAGCCGATTGCCGCCTTTTCGTCGGCCGGTGTCGCCG
GTGGCCGGCACCGACGGTCGGAACCGACGGCGGCAGAGAAGGCAGGCGCC
GCCGTAGCGGCCGCGGCTGAATCGTCGGCGGCAATTTCTGCAGCGGAGGT
CCCCGCGAAGGAGGCTGCGACTGCTCTGGCGGCGGAAGCGGAGGAAGACA
ACGAGATGCCAGACGAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5781:485..2201-

>mRNA_P-wetherbeei_contig5781.1.1 ID=mRNA_P-wetherbeei_contig5781.1.1|Name=mRNA_P-wetherbeei_contig5781.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1224bp|location=Sequence derived from alignment at P-wetherbeei_contig5781:485..2201- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCGAGTACAAGTGCGCCGAGGTCATCGACATCGGCCTTTACCTGCA
GGAGCTGCTTCGCTCCACCAAGGAGCTGCACCCGTCGGCGGCGGAGGAGC
GGGCGGCCCTCCGCTCGGCATTCCATGCAACCGTTCAGGAGTGCGGTGCC
GCCGCCGCTGCCGTCCGGCGCCAGCTCACCGCCGCCACCGCTGCAGAGAC
CGCTGCAGAAGAGGCGGAGGCCGCCGAGAAGTGTCGGAGGCCGCCGGCCG
CCGCCGACGCTATAGAGGCAAAGGCAGATTCAGCAGCCGGTATGTGTGCA
GAGGCAGATCTAGCGGCGGCCGCAGAGGCGGTGCCGCGCGCGGATGAGAT
GGTTCTTGCGGCGGCTAAGGCGGCCGAGACTGCGCCAGCTGTTGAGTTCG
CCGCGGCAGGCGCACAGGTGCCGCCGGCGGCCGAGCCAATGGCCGTTCCG
TCTGCCGACGCTGCGGCTGCCGACGCTGCGGTTGCCGATGCTGCGGCTGC
CGGCGCTGCGGCTGCCGACGCTGCGGCTGCTACTCTCGCTGCTACTACGT
CTGTCGACGCGGCTGCGGTCGCGGCTTCTGTGGCGGTGGCCGTGGCGGCG
ATTGCGGCCGAGGACGACGATGCTCCCGCCGCTGTCGCTGCCGTCTCGAC
GCAGCCCGCCGCGGAAGTCGTTGTCAGCGGCGAGGCGGCTGCCGTAGAGA
CGGTTGCTGTACTGCCTCCTATAGTGACCGAGCCGACCGCCGGCGCCGTC
GTGACCGATTGCGCGACTGTTTTCGGCGCTGAATGCATCTCGCTAGTGAC
AGCCGTCAAGAAACCGACGGAGGAAACCGCTATCGTCACTGTAAAAGATC
TTGACTTGGTTCCCGAAGCGGCGGCGGTGGATGTTATCGACGCTGACACC
TCCGGTGGCGCAGCAGTCGATGCCGCCGGCGACGCCGACAACGACTCCGG
CGTCGCGTTCTTGCTGCCGCTGCTGCCGCCACCGCGCCTTAAGCGCTTCT
GTCACAGCGCCAACGCTGCCGAGCCGATTGCCGCCTTTTCGTCGGCCGGT
GTCGCCGGTGGCCGGCACCGACGGTCGGAACCGACGGCGGCAGAGAAGGC
AGGCGCCGCCGTAGCGGCCGCGGCTGAATCGTCGGCGGCAATTTCTGCAG
CGGAGGTCCCCGCGAAGGAGGCTGCGACTGCTCTGGCGGCGGAAGCGGAG
GAAGACAACGAGATGCCAGACGAG
back to top