mRNA_P-wetherbeei_contig57797.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57797.1.1
Unique NamemRNA_P-wetherbeei_contig57797.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57797.1.1 vs. uniprot
Match: A0A7K1B206_9ACTN (SDR family NAD(P)-dependent oxidoreductase n=2 Tax=root TaxID=1 RepID=A0A7K1B206_9ACTN)

HSP 1 Score: 216 bits (549), Expect = 8.940e-68
Identity = 108/162 (66.67%), Postives = 123/162 (75.93%), Query Frame = 1
Query:    1 VRASVPDMLAAGVGAIVNVGSLAGRVAPPYGGVYAASKHAVEALSEGLHFELSQQGIRVHVIEPGQFATALGANAAYTVAMVDGSPEHQRFGRYREAQRRLVNGEPADPQLVADAIYRAATEESPKLRHPVGADAEMVIAVKDQLSFEDFDAAMRSTLDWHE 486
            VRA VP +L  G G IVNVGS+AG V  PYGG+YA SKHA+EALSE LHFELS +GIRVH+IEPGQFATALG+NA    AM  GS EH R  R+R AQR LVNGEPA   +VADAI  A TE+ P+LRHPVGADAE++   K  +SFEDFD  MR+ LDWHE
Sbjct:  112 VRAVVPHLLERGSGTIVNVGSIAGLVGAPYGGIYAGSKHALEALSEALHFELSHRGIRVHLIEPGQFATALGSNATIAAAMPAGSTEHDRLTRFRAAQRTLVNGEPAPASVVADAIVAAVTEQPPRLRHPVGADAELIRTTKASMSFEDFDTTMRTVLDWHE 273          
BLAST of mRNA_P-wetherbeei_contig57797.1.1 vs. uniprot
Match: A0A3C2B4K0_9ACTN (Short-chain dehydrogenase/reductase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B4K0_9ACTN)

HSP 1 Score: 217 bits (553), Expect = 1.580e-67
Identity = 109/161 (67.70%), Postives = 124/161 (77.02%), Query Frame = 1
Query:    4 RASVPDMLAAGVGAIVNVGSLAGRVAPPYGGVYAASKHAVEALSEGLHFELSQQGIRVHVIEPGQFATALGANAAYTVAMVDGSPEHQRFGRYREAQRRLVNGEPADPQLVADAIYRAATEESPKLRHPVGADAEMVIAVKDQLSFEDFDAAMRSTLDWHE 486
            RA VP M+  G GAIVNVGS+AG V  PYGG+YAASKHAVEAL+E +HFELSQQGIRV V+EPGQFAT LGA      AM  G+PEH R+ R+R AQR LVNGEPADPQ VAD IY AATE   KLR PVG DA+++IA K  +SFEDFD  MR+ L+WHE
Sbjct:  179 RAVVPHMIERGGGAIVNVGSVAGLVGAPYGGIYAASKHAVEALTEAMHFELSQQGIRVSVVEPGQFATQLGAKGFVAEAMAPGTPEHDRWQRFRTAQRSLVNGEPADPQRVADVIYAAATERPGKLRWPVGGDADLIIATKSAMSFEDFDTTMRAALNWHE 339          
BLAST of mRNA_P-wetherbeei_contig57797.1.1 vs. uniprot
Match: A0A7X9Q204_9ACTN (SDR family oxidoreductase n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9Q204_9ACTN)

HSP 1 Score: 207 bits (528), Expect = 1.350e-64
Identity = 108/162 (66.67%), Postives = 124/162 (76.54%), Query Frame = 1
Query:    1 VRASVPDMLAAGVGAIVNVGSLAGRVAPPYGGVYAASKHAVEALSEGLHFELSQQGIRVHVIEPGQFATALGANAAYTVAMVDGSPEHQRFGRYREAQRRLVNGEPADPQLVADAIYRAATEESPKLRHPVGADAEMVIAVKDQLSFEDFDAAMRSTLDWHE 486
            VRA VP MLA G G IVNVGS+AG V  PYGG+YAASKHAVEA+SE LHFELSQQGIRV V+EPGQF+T LGAN     AM   + E QR  R+  AQR LVNGEPA  Q VAD IY+AATE+   LR+PVGADAE++IA K  +SFEDFD  MR+TL+W+E
Sbjct:  112 VRAVVPAMLANGGGTIVNVGSVAGLVGTPYGGIYAASKHAVEAISEALHFELSQQGIRVRVVEPGQFSTQLGANGLLAAAMTPDTAEFQRRERFHIAQRSLVNGEPAPAQQVADVIYQAATEQPGTLRYPVGADAELIIATKAAMSFEDFDTTMRATLNWYE 273          
BLAST of mRNA_P-wetherbeei_contig57797.1.1 vs. uniprot
Match: A0A6I3ESL8_9ACTN (SDR family NAD(P)-dependent oxidoreductase n=2 Tax=root TaxID=1 RepID=A0A6I3ESL8_9ACTN)

HSP 1 Score: 204 bits (519), Expect = 3.850e-63
Identity = 104/162 (64.20%), Postives = 124/162 (76.54%), Query Frame = 1
Query:    1 VRASVPDMLAAGVGAIVNVGSLAGRVAPPYGGVYAASKHAVEALSEGLHFELSQQGIRVHVIEPGQFATALGANAAYTVAMVDGSPEHQRFGRYREAQRRLVNGEPADPQLVADAIYRAATEESPKLRHPVGADAEMVIAVKDQLSFEDFDAAMRSTLDWHE 486
            VRA VP ++A G GAIV VGS+AG V  PYGG+YAASKHAVEAL+E +HFELS  G+RV V+EPGQFATALG N  +   M++GSPE  R  R+R AQR LVNG+PA PQ VADAIY AATE   KLR+ VGADAE++ A K  +SFEDFD  MR+ LD+H+
Sbjct:  119 VRAVVPHLVANGGGAIVTVGSIAGLVGTPYGGIYAASKHAVEALTEAMHFELSHLGVRVSVVEPGQFATALGDNGVHAAGMIEGSPEAVRRDRFRTAQRTLVNGQPAHPQAVADAIYCAATERPGKLRYLVGADAELIAATKAAMSFEDFDVTMRAALDFHD 280          
BLAST of mRNA_P-wetherbeei_contig57797.1.1 vs. uniprot
Match: A0A3D5K5S5_9ACTN (Short-chain dehydrogenase/reductase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3D5K5S5_9ACTN)

HSP 1 Score: 164 bits (416), Expect = 1.150e-47
Identity = 89/162 (54.94%), Postives = 110/162 (67.90%), Query Frame = 1
Query:    4 RASVPDMLAAGVGAIVNVGSLAGRVAPPYGGVYAASKHAVEALSEGLHFELSQQGIRVHVIEPGQFATALGANAAYTVAMVDGSPEHQRFGRYREAQRRLV-NGEPADPQLVADAIYRAATEESPKLRHPVGADAEMVIAVKDQLSFEDFDAAMRSTLDWHE 486
            RA +P     G G IVNV S+AGRVAPPY G YAASKHA+EAL+E LHFE+S  GIRVH+IEPG+F T    N  +  A  +GSP   R   +R++   L  +G PADPQLVAD+I RAAT+ S   R  VG DAE++ A K  +SFEDF+  MR+ LDWH+
Sbjct:  114 RAVLPAWSERGSGVIVNVSSIAGRVAPPYSGAYAASKHALEALTESLHFEVSHLGIRVHLIEPGRFPTNFSDNIVFPPAW-EGSPHEDRALIFRDSLTSLDGDGTPADPQLVADSIVRAATDPSTPFRTLVGGDAELIDATKTSMSFEDFETTMRAALDWHD 274          
BLAST of mRNA_P-wetherbeei_contig57797.1.1 vs. uniprot
Match: A0A2E0ZUF0_9ACTN (Short-chain dehydrogenase/reductase n=6 Tax=root TaxID=1 RepID=A0A2E0ZUF0_9ACTN)

HSP 1 Score: 159 bits (403), Expect = 1.040e-45
Identity = 86/162 (53.09%), Postives = 108/162 (66.67%), Query Frame = 1
Query:    4 RASVPDMLAAGVGAIVNVGSLAGRVAPPYGGVYAASKHAVEALSEGLHFELSQQGIRVHVIEPGQFATALGANAAYTVAMVDGSPEHQRFGRYREAQRRLVNG-EPADPQLVADAIYRAATEESPKLRHPVGADAEMVIAVKDQLSFEDFDAAMRSTLDWHE 486
            RA +P     G G +VNV S+AGRVAPPYGG Y+ASKHA+EA+SE LHFE+SQ GIRVH+IEPG+F T    N  +  +   GS + QR   +R +   L  G  P+DPQ VADAI RAAT+ S   R  VG DA ++ A K  +SFEDF+  MR+ LDWH+
Sbjct:  114 RAVLPMWCERGSGVVVNVSSIAGRVAPPYGGAYSASKHALEAMSESLHFEVSQLGIRVHLIEPGRFTTNFQDNIVHPASWT-GSAQEQRALAFRNSLASLDGGGPPSDPQAVADAIVRAATDPSMPFRTLVGEDAVLIDATKTSMSFEDFETTMRTALDWHD 274          
BLAST of mRNA_P-wetherbeei_contig57797.1.1 vs. uniprot
Match: A0A2E1DM12_9ACTN (Short-chain dehydrogenase/reductase n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2E1DM12_9ACTN)

HSP 1 Score: 157 bits (397), Expect = 8.290e-45
Identity = 86/162 (53.09%), Postives = 109/162 (67.28%), Query Frame = 1
Query:    4 RASVPDMLAAGVGAIVNVGSLAGRVAPPYGGVYAASKHAVEALSEGLHFELSQQGIRVHVIEPGQFATALGANAAYTVAMVDGSPEHQRFGRYREAQRRLV-NGEPADPQLVADAIYRAATEESPKLRHPVGADAEMVIAVKDQLSFEDFDAAMRSTLDWHE 486
            RA +P     G G IVNV S+AGRVA PY G Y+ASK+A+EALSE  HFE+SQ GIR+H+IEPG+F T    N     +  DGSP+ QR   +RE+   L  NGE  DPQLVADAI  AAT+ S   R  VG DAE++ A K  +SFE+F+A MR+ L+W++
Sbjct:  114 RAVIPAWSERGSGVIVNVSSIAGRVASPYSGAYSASKYALEALSEAAHFEVSQLGIRIHLIEPGRFQTGFFDNIVRPESW-DGSPQEQRAQEFRESLTSLDGNGERPDPQLVADAIVNAATDPSAPFRKLVGGDAELIDATKTAMSFEEFEATMRAALNWYD 274          
BLAST of mRNA_P-wetherbeei_contig57797.1.1 vs. uniprot
Match: A0A2E6UL68_9ACTN (Short-chain dehydrogenase/reductase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E6UL68_9ACTN)

HSP 1 Score: 157 bits (397), Expect = 8.290e-45
Identity = 87/162 (53.70%), Postives = 106/162 (65.43%), Query Frame = 1
Query:    4 RASVPDMLAAGVGAIVNVGSLAGRVAPPYGGVYAASKHAVEALSEGLHFELSQQGIRVHVIEPGQFATALGANAAYTVAMVDGSPEHQRFGRYREAQRRLV-NGEPADPQLVADAIYRAATEESPKLRHPVGADAEMVIAVKDQLSFEDFDAAMRSTLDWHE 486
            RA +P     G G IVNV S+AGRVAPPY G YAASKHA+EAL+E LHFE+S  G+RVH+IEPG+F T    N  +      GS    R   +RE+   L  +G PADPQ VADAI  AAT+ S   R  VGADAE++ A K  +SFEDF+  MR+ LDWH+
Sbjct:  114 RAVLPAWSERGSGVIVNVSSIAGRVAPPYSGAYAASKHALEALTESLHFEVSHLGLRVHLIEPGRFLTNFHDNIVFPSVWA-GSAHEDRALAFRESLTSLDGDGPPADPQAVADAIALAATDPSTPFRTLVGADAELIDATKTSMSFEDFETTMRAALDWHD 274          
BLAST of mRNA_P-wetherbeei_contig57797.1.1 vs. uniprot
Match: A0A2D6KLD2_9ACTN (Short-chain dehydrogenase/reductase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6KLD2_9ACTN)

HSP 1 Score: 155 bits (392), Expect = 4.680e-44
Identity = 86/162 (53.09%), Postives = 107/162 (66.05%), Query Frame = 1
Query:    4 RASVPDMLAAGVGAIVNVGSLAGRVAPPYGGVYAASKHAVEALSEGLHFELSQQGIRVHVIEPGQFATALGANAAYTVAMVDGSPEHQRFGRYREAQRRLVN-GEPADPQLVADAIYRAATEESPKLRHPVGADAEMVIAVKDQLSFEDFDAAMRSTLDWHE 486
            RA +P       G I+NV S+AGRVAPPY G YAASKHA+EAL+E LHFE+S  GIRVH+IEPG+F T    +  +  ++  GS    R   +RE+   L   G PADPQ VADAI RAAT+ S   R  VGADAE++ A K  +SFEDF+  MR+ LDWH+
Sbjct:  114 RAVLPAWSERESGVIINVSSIAGRVAPPYSGAYAASKHALEALTESLHFEVSHLGIRVHLIEPGRFLTNFRDSIVFP-SVWKGSLHEDRALAFRESLTSLDGAGPPADPQTVADAIARAATDHSAPFRTLVGADAELIDATKSSMSFEDFETTMRTALDWHD 274          
BLAST of mRNA_P-wetherbeei_contig57797.1.1 vs. uniprot
Match: A0A2E7SQ01_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E7SQ01_9ACTN)

HSP 1 Score: 154 bits (388), Expect = 2.240e-43
Identity = 88/171 (51.46%), Postives = 107/171 (62.57%), Query Frame = 1
Query:    1 VRASVPDMLAAGVGAIVNVGSLAGRVAPPYGGVYAASKHAVEALSEGLHFELSQQGIRVHVIEPGQFATALGANAAYTVAMVDGSPEHQRFGRYREAQRRLVN---------GEPADPQLVADAIYRAATEESPKLRHPVGADAEMVIAVKDQLSFEDFDAAMRSTLDWHE 486
            +RA +P     G G IVNV S+AGR APPY G YAASKHA+EALSE LHFE+S  GIRV VIEPG+F+T    N     +  +GS   QR   +REA   L N         G P DPQ+VADAI RA  + +   R  VG DAE++ A K  +SFEDF+A MR+ LDWH+
Sbjct:  112 IRAVLPAWSQRGSGVIVNVSSIAGRSAPPYSGSYAASKHALEALSESLHFEVSHLGIRVCVIEPGRFSTGFFENIVRPDSW-EGSSHQQRATAFREALLNLDNLGNEGTGEGGAPPDPQIVADAIVRAVKDPTTPFRTLVGQDAELIDATKTSMSFEDFEATMRAALDWHD 281          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57797.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K1B206_9ACTN8.940e-6866.67SDR family NAD(P)-dependent oxidoreductase n=2 Tax... [more]
A0A3C2B4K0_9ACTN1.580e-6767.70Short-chain dehydrogenase/reductase n=1 Tax=Acidim... [more]
A0A7X9Q204_9ACTN1.350e-6466.67SDR family oxidoreductase n=2 Tax=Actinobacteria T... [more]
A0A6I3ESL8_9ACTN3.850e-6364.20SDR family NAD(P)-dependent oxidoreductase n=2 Tax... [more]
A0A3D5K5S5_9ACTN1.150e-4754.94Short-chain dehydrogenase/reductase n=2 Tax=Acidim... [more]
A0A2E0ZUF0_9ACTN1.040e-4553.09Short-chain dehydrogenase/reductase n=6 Tax=root T... [more]
A0A2E1DM12_9ACTN8.290e-4553.09Short-chain dehydrogenase/reductase n=2 Tax=Actino... [more]
A0A2E6UL68_9ACTN8.290e-4553.70Short-chain dehydrogenase/reductase n=2 Tax=Acidim... [more]
A0A2D6KLD2_9ACTN4.680e-4453.09Short-chain dehydrogenase/reductase n=1 Tax=Acidim... [more]
A0A2E7SQ01_9ACTN2.240e-4351.46Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57797contigP-wetherbeei_contig57797:9..497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1229780.BN381_70010
PFAMsadh_short
Model size489
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4e-22
EggNOG OGsCOG4221@1|root,COG4221@2|Bacteria,2GRRV@201174|Actinobacteria
DescriptionBelongs to the short-chain dehydrogenases reductases (SDR) family
Cds size468
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186856.658829-CDS-P-wetherbeei_contig57797:8..4761683186856.658829-CDS-P-wetherbeei_contig57797:8..476Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57797 9..476 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186856.6694307-UTR-P-wetherbeei_contig57797:476..4971683186856.6694307-UTR-P-wetherbeei_contig57797:476..497Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig57797 477..497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57797.1.1prot_P-wetherbeei_contig57797.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57797 9..476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57797.1.1

>prot_P-wetherbeei_contig57797.1.1 ID=prot_P-wetherbeei_contig57797.1.1|Name=mRNA_P-wetherbeei_contig57797.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
MLAAGVGAIVNVGSLAGRVAPPYGGVYAASKHAVEALSEGLHFELSQQGI
RVHVIEPGQFATALGANAAYTVAMVDGSPEHQRFGRYREAQRRLVNGEPA
DPQLVADAIYRAATEESPKLRHPVGADAEMVIAVKDQLSFEDFDAAMRST
LDWHE*
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mRNA from alignment at P-wetherbeei_contig57797:9..497-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57797.1.1 ID=mRNA_P-wetherbeei_contig57797.1.1|Name=mRNA_P-wetherbeei_contig57797.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig57797:9..497- (Phaeothamnion wetherbeei SAG_119_79)
GTGCGCGCGTCGGTTCCGGACATGCTCGCGGCCGGTGTGGGGGCGATCGT CAACGTCGGCTCGCTCGCCGGACGAGTCGCACCGCCGTACGGCGGCGTCT ACGCGGCCAGCAAGCACGCCGTGGAAGCACTGAGCGAAGGGCTCCACTTC GAGCTGTCGCAGCAGGGCATCCGCGTCCACGTGATCGAGCCTGGTCAGTT CGCCACCGCACTGGGCGCCAACGCGGCGTACACCGTGGCGATGGTCGACG GCAGCCCGGAGCACCAGCGCTTCGGCCGCTACCGCGAGGCGCAACGACGG CTGGTGAACGGTGAGCCCGCCGATCCGCAGCTCGTCGCCGACGCCATCTA CCGCGCCGCGACCGAGGAGTCGCCCAAGTTGCGCCACCCCGTCGGCGCCG ATGCCGAGATGGTGATCGCGGTGAAGGATCAGCTCTCCTTCGAGGACTTC GACGCGGCGATGCGCTCGACACTCGATTGGCACGAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57797:9..497-

>mRNA_P-wetherbeei_contig57797.1.1 ID=mRNA_P-wetherbeei_contig57797.1.1|Name=mRNA_P-wetherbeei_contig57797.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig57797:9..497- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGCGGCCGGTGTGGGGGCGATCGTCAACGTCGGCTCGCTCGCCGG
ACGAGTCGCACCGCCGTACGGCGGCGTCTACGCGGCCAGCAAGCACGCCG
TGGAAGCACTGAGCGAAGGGCTCCACTTCGAGCTGTCGCAGCAGGGCATC
CGCGTCCACGTGATCGAGCCTGGTCAGTTCGCCACCGCACTGGGCGCCAA
CGCGGCGTACACCGTGGCGATGGTCGACGGCAGCCCGGAGCACCAGCGCT
TCGGCCGCTACCGCGAGGCGCAACGACGGCTGGTGAACGGTGAGCCCGCC
GATCCGCAGCTCGTCGCCGACGCCATCTACCGCGCCGCGACCGAGGAGTC
GCCCAAGTTGCGCCACCCCGTCGGCGCCGATGCCGAGATGGTGATCGCGG
TGAAGGATCAGCTCTCCTTCGAGGACTTCGACGCGGCGATGCGCTCGACA
CTCGATTGGCACGAGTGA
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