mRNA_P-wetherbeei_contig57778.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig57778.1.1
Unique Name	mRNA_P-wetherbeei_contig57778.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig57778.1.1 vs. uniprot
Match: A0A6N7GUS9_9HYPH (ATP-grasp domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GUS9_9HYPH)

HSP 1 Score: 164 bits (414), Expect = 6.460e-45
Identity = 79/120 (65.83%), Postives = 93/120 (77.50%), Query Frame = 1

Query:    1 MVSGVEAIVGARDDALYGPLLLVGTGGIFVELVGDASLALLPVGPEEICKTIDHLKLARLLDGFRGKPALDRKALEKAVGGLAQFFIDHRDRVVDIEINPLIVREDGKGAIAVDVRVIWQ 360
            MVSG+EAIVGAR D  YGP+LLVG GGI VEL  DA L LLPVG  ++   ID LKL +LL G+RG+PA DR ALE  V  LAQF++DHR R+ DIEINPL++R  GKGA+AVDVRVIW+
Sbjct:  560 MVSGIEAIVGARTDKFYGPMLLVGAGGILVELANDAGLRLLPVGKSDVAAMIDGLKLNKLLAGYRGQPAADRAALEATVFALAQFYLDHRARIEDIEINPLMIRPQGKGAVAVDVRVIWR 679

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BLAST of mRNA_P-wetherbeei_contig57778.1.1 vs. uniprot
Match: A0A537RY55_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537RY55_9PROT)

HSP 1 Score: 144 bits (363), Expect = 4.460e-42
Identity = 79/130 (60.77%), Postives = 89/130 (68.46%), Query Frame = 1

Query:   13 VEAIVGARDDALYGPLLLVGTGGIFVELVGDASLALLPVGPEEICKTIDHLKLARLLDGFRGKPALDRKALEKAVGGLAQFFIDHRDRVVDIEINPLIVRE-DGK-------------GAIAVDVRVIWQ 360
            VEAIVG R D  YGPLLL+G+GG+ VELV DA+L LLPV PEE+   ID L+LAR L GFRG  A DR ALE A   L +FF+DHR RV +IEINPLIVR  DG              GAIAVDVRV+WQ
Sbjct:    1 VEAIVGGRSDPFYGPLLLIGSGGVLVELVNDAALRLLPVCPEEVAAMIDDLRLARRLSGFRGGLAADRAALEAAALALGRFFLDHRARVKEIEINPLIVRSIDGSPRAAGPDPAKPRVGAIAVDVRVLWQ 130

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BLAST of mRNA_P-wetherbeei_contig57778.1.1 vs. uniprot
Match: A0A537NDT1_9PROT (Acetate--CoA ligase family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NDT1_9PROT)

HSP 1 Score: 151 bits (382), Expect = 1.670e-41
Identity = 76/119 (63.87%), Postives = 92/119 (77.31%), Query Frame = 1

Query:    1 MVSGVEAIVGARDDALYGPLLLVGTGGIFVELVGDASLALLPVGPEEICKTIDHLKLARLLDGFRGKPALDRKALEKAVGGLAQFFIDHRDRVVDIEINPLIVREDGKGAIAVDVRVIW 357
            MV+G+EAI+GAR D LYGPLLLVG GGI VE+V D +L LLPV  +E+ K I  LKLA  L GFRG+PA DR AL +    LA+FF+DH  R++DIEINPL+VR +G GAIAVDVRV+W
Sbjct:  332 MVAGIEAILGARTDPLYGPLLLVGAGGILVEIVRDTALRLLPVTLDEVEKMIGELKLAGPLAGFRGQPAADRAALAQGALALARFFLDHHTRLIDIEINPLMVRANGCGAIAVDVRVVW 450

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BLAST of mRNA_P-wetherbeei_contig57778.1.1 vs. uniprot
Match: A0A537SSF0_9PROT (Acetate--CoA ligase family protein n=5 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537SSF0_9PROT)

HSP 1 Score: 151 bits (381), Expect = 3.470e-40
Identity = 81/134 (60.45%), Postives = 92/134 (68.66%), Query Frame = 1

Query:    1 MVSGVEAIVGARDDALYGPLLLVGTGGIFVELVGDASLALLPVGPEEICKTIDHLKLARLLDGFRGKPALDRKALEKAVGGLAQFFIDHRDRVVDIEINPLIVR--------------EDGKGAIAVDVRVIWQ 360
            MV GVEAIVG R D  YGPLLL+G+GG+ VELV DA+L LLPV PEE+   ID L+LAR L GFRG  A DR ALE A   L +FF+DHR RV +IEINPLIVR              + G GAIAVDVRV+WQ
Sbjct:  584 MVDGVEAIVGGRSDPFYGPLLLIGSGGVLVELVNDAALRLLPVCPEEVAAMIDDLRLARRLSGFRGGLAADRAALEAAALALGRFFLDHRARVKEIEINPLIVRSIDGSPRAAGPDPAKPGVGAIAVDVRVLWQ 717

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BLAST of mRNA_P-wetherbeei_contig57778.1.1 vs. uniprot
Match: A0A523FUJ0_9PROT (CoA-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A523FUJ0_9PROT)

HSP 1 Score: 141 bits (356), Expect = 8.680e-37
Identity = 71/121 (58.68%), Postives = 89/121 (73.55%), Query Frame = 1

Query:    1 MVSGVEAIVGARDDALYGPLLLVGTGGIFVELVGDASLALLPVGPEEICKTIDHLKLARLLDGFRGKPALDRKALEKAVGGLAQFFIDHRDRVVDIEINPLIVREDGKGAIAVDVRVIWQT 363
            MVSGVE IVGARDDALYGP++LVGTGGI VEL+GDA++ LLPV  +++   I  LK   LL GFRG PA D  AL  AV GL + ++DHR  + D+E+NPLIVR+ G G  AVDVR + ++
Sbjct:  569 MVSGVEMIVGARDDALYGPVILVGTGGIMVELMGDAAMRLLPVDEDDVRAMIAELKGRELLAGFRGAPAADTDALVAAVVGLGRVYLDHRHLLADLEVNPLIVRQRGAGVAAVDVRPVRRS 689

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BLAST of mRNA_P-wetherbeei_contig57778.1.1 vs. uniprot
Match: A0A2E6Q5S7_9PROT (ATP-grasp domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6Q5S7_9PROT)

HSP 1 Score: 133 bits (334), Expect = 9.630e-34
Identity = 64/118 (54.24%), Postives = 86/118 (72.88%), Query Frame = 1

Query:    1 MVSGVEAIVGARDDALYGPLLLVGTGGIFVELVGDASLALLPVGPEEICKTIDHLKLARLLDGFRGKPALDRKALEKAVGGLAQFFIDHRDRVVDIEINPLIVREDGKGAIAVDVRVI 354
            MVSGVEAIVG R+D  YGP+LL+G GGI VEL  D +  +LPV P+++   +  LKL++LL G RG+P  D+ AL  AV  L+QF++DHRD + +IEINPL+V E+G G  AVD+R +
Sbjct:  583 MVSGVEAIVGVREDEFYGPVLLLGAGGILVELAQDTAFRMLPVEPDDVHAMLGELKLSQLLAGVRGRPPGDKDALVAAVCALSQFYLDHRDWLAEIEINPLMVLEEGGGVRAVDIRAV 700

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BLAST of mRNA_P-wetherbeei_contig57778.1.1 vs. uniprot
Match: A0A2E6GP21_9PROT (CoA_binding domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6GP21_9PROT)

HSP 1 Score: 130 bits (327), Expect = 8.510e-33
Identity = 61/118 (51.69%), Postives = 84/118 (71.19%), Query Frame = 1

Query:    1 MVSGVEAIVGARDDALYGPLLLVGTGGIFVELVGDASLALLPVGPEEICKTIDHLKLARLLDGFRGKPALDRKALEKAVGGLAQFFIDHRDRVVDIEINPLIVREDGKGAIAVDVRVI 354
            MVSGVE ++GAR+D  YGP+L+VG GG+ VELV D +L LLP   ++I   +  LK++ +LDGFRG    D+ AL  ++ GL++FF+DHR  + DIEINPL+VR  G G  AVD+R +
Sbjct:  572 MVSGVELLIGAREDDQYGPILIVGAGGVMVELVKDVALRLLPASEDDINNMLAELKVSSMLDGFRGSGPADKDALIASIKGLSEFFLDHRTWLSDIEINPLMVRPKGHGVCAVDIRTV 689

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BLAST of mRNA_P-wetherbeei_contig57778.1.1 vs. uniprot
Match: A0A2E7QYR0_9PROT (CoA_binding domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7QYR0_9PROT)

HSP 1 Score: 128 bits (321), Expect = 5.630e-32
Identity = 62/120 (51.67%), Postives = 81/120 (67.50%), Query Frame = 1

Query:    1 MVSGVEAIVGARDDALYGPLLLVGTGGIFVELVGDASLALLPVGPEEICKTIDHLKLARLLDGFRGKPALDRKALEKAVGGLAQFFIDHRDRVVDIEINPLIVREDGKGAIAVDVRVIWQ 360
            MV G E + GARDDA YGP+L+VG+GG+ VELV D S+ LLP    +I   I  LK++ LLDGFRG    D+ AL   + GLA FF+DHR  + D EINPL+V+  G+G  AVD+R + +
Sbjct:  572 MVLGAELLXGARDDAQYGPILIVGSGGVMVELVKDVSVRLLPASENDIRDMIGELKISTLLDGFRGGKPADKDALIAGIKGLADFFLDHRTWLADXEINPLMVKTRGEGICAVDIRAVTR 691

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BLAST of mRNA_P-wetherbeei_contig57778.1.1 vs. uniprot
Match: A0A6N7FE09_9PROT (CoA_binding domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7FE09_9PROT)

HSP 1 Score: 127 bits (319), Expect = 1.080e-31
Identity = 63/118 (53.39%), Postives = 81/118 (68.64%), Query Frame = 1

Query:    1 MVSGVEAIVGARDDALYGPLLLVGTGGIFVELVGDASLALLPVGPEEICKTIDHLKLARLLDGFRGKPALDRKALEKAVGGLAQFFIDHRDRVVDIEINPLIVREDGKGAIAVDVRVI 354
            MV G+E +VG R+D  +GPL++VG GG+FVEL+ D S+ L PV   E    +D LK AR L  FRG+   DRK L  A+ GL+QFF+DHR  + +IEINPL+V EDG G  AVDVR +
Sbjct:  582 MVDGLEMLVGLRNDPQFGPLVVVGLGGVFVELMRDVSIRLAPVDEAEASAMLDSLKGARALGAFRGRAPRDRKGLAHAIAGLSQFFLDHRHWLDEIEINPLMVLEDGAGVRAVDVRAV 699

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BLAST of mRNA_P-wetherbeei_contig57778.1.1 vs. uniprot
Match: A0A7C9KKM7_9PROT (CoA_binding domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7C9KKM7_9PROT)

HSP 1 Score: 124 bits (312), Expect = 9.520e-31
Identity = 62/118 (52.54%), Postives = 79/118 (66.95%), Query Frame = 1

Query:    1 MVSGVEAIVGARDDALYGPLLLVGTGGIFVELVGDASLALLPVGPEEICKTIDHLKLARLLDGFRGKPALDRKALEKAVGGLAQFFIDHRDRVVDIEINPLIVREDGKGAIAVDVRVI 354
            MV+GVE I G R D +YGP+LL+G GG  VEL+ DA+  LLPV   ++   +  LK   LL GFRG    D  AL +AV GL + F+DHR+ + D+E+NPLIVRE GKG  AVDVR +
Sbjct:  569 MVAGVEMIAGCRTDPVYGPVLLLGAGGTLVELMQDATQRLLPVTARDVRAMLSELKTKALLAGFRGARPADTAALVRAVVGLGRIFLDHRETLADLEVNPLIVREKGKGVAAVDVRPV 686

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig57778.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig57778.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6N7GUS9_9HYPH	6.460e-45	65.83	ATP-grasp domain-containing protein n=1 Tax=Hyphom...	[more]
A0A537RY55_9PROT	4.460e-42	60.77	Uncharacterized protein (Fragment) n=1 Tax=Alphapr...	[more]
A0A537NDT1_9PROT	1.670e-41	63.87	Acetate--CoA ligase family protein n=1 Tax=Alphapr...	[more]
A0A537SSF0_9PROT	3.470e-40	60.45	Acetate--CoA ligase family protein n=5 Tax=Alphapr...	[more]
A0A523FUJ0_9PROT	8.680e-37	58.68	CoA-binding protein n=1 Tax=Alphaproteobacteria ba...	[more]
A0A2E6Q5S7_9PROT	9.630e-34	54.24	ATP-grasp domain-containing protein n=1 Tax=Rhodos...	[more]
A0A2E6GP21_9PROT	8.510e-33	51.69	CoA_binding domain-containing protein n=1 Tax=Rhod...	[more]
A0A2E7QYR0_9PROT	5.630e-32	51.67	CoA_binding domain-containing protein n=1 Tax=Rhod...	[more]
A0A6N7FE09_9PROT	1.080e-31	53.39	CoA_binding domain-containing protein n=1 Tax=Alph...	[more]
A0A7C9KKM7_9PROT	9.520e-31	52.54	CoA_binding domain-containing protein n=1 Tax=Alph...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig57778	contig	P-wetherbeei_contig57778:108..473 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	795666.MW7_2439
PFAMs	ATP-grasp_5,Acetyltransf_3,CoA_binding_2,Succ_CoA_lig
Model size	366
Max annot lvl	28216\|Betaproteobacteria
Hectar predicted targeting category	other localisation
Exons	1
Evalue	4.78e-27
EggNOG OGs	COG1042@1\|root,COG1042@2\|Bacteria,1MW98@1224\|Proteobacteria,2VI9R@28216\|Betaproteobacteria,1K035@119060\|Burkholderiaceae
Description	CoA-binding domain protein
Cds size	366
COG category	C

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186856.5699544-CDS-P-wetherbeei_contig57778:107..473	1683186856.5699544-CDS-P-wetherbeei_contig57778:107..473	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig57778 108..473 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig57778.1.1	prot_P-wetherbeei_contig57778.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig57778 108..473 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig57778:108..473-
coding sequence from alignment at P-wetherbeei_contig57778:108..473-

protein sequence of mRNA_P-wetherbeei_contig57778.1.1

>prot_P-wetherbeei_contig57778.1.1 ID=prot_P-wetherbeei_contig57778.1.1|Name=mRNA_P-wetherbeei_contig57778.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
MVSGVEAIVGARDDALYGPLLLVGTGGIFVELVGDASLALLPVGPEEICK
TIDHLKLARLLDGFRGKPALDRKALEKAVGGLAQFFIDHRDRVVDIEINP
LIVREDGKGAIAVDVRVIWQT*

mRNA from alignment at P-wetherbeei_contig57778:108..473-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig57778.1.1 ID=mRNA_P-wetherbeei_contig57778.1.1|Name=mRNA_P-wetherbeei_contig57778.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig57778:108..473- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGTCGGGCGTCGAGGCGATCGTGGGCGCGCGTGACGATGCGCTTTA
CGGGCCGCTGCTGCTCGTGGGAACGGGTGGAATATTCGTCGAGCTGGTTG
GGGATGCGTCATTGGCCCTGTTGCCGGTCGGGCCGGAAGAGATTTGCAAG
ACGATCGACCACTTGAAGCTCGCGCGTTTGCTCGACGGCTTTCGAGGCAA
ACCGGCGTTGGACCGCAAGGCTCTTGAAAAGGCAGTGGGAGGGCTCGCGC
AGTTCTTCATCGATCATCGCGACAGGGTTGTGGATATCGAGATCAATCCG
CTGATCGTTCGCGAAGACGGCAAGGGGGCGATTGCGGTCGATGTGCGGGT
TATTTGGCAGACTTGA

Coding sequence (CDS) from alignment at P-wetherbeei_contig57778:108..473-

>mRNA_P-wetherbeei_contig57778.1.1 ID=mRNA_P-wetherbeei_contig57778.1.1|Name=mRNA_P-wetherbeei_contig57778.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig57778:108..473- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGTCGGGCGTCGAGGCGATCGTGGGCGCGCGTGACGATGCGCTTTA
CGGGCCGCTGCTGCTCGTGGGAACGGGTGGAATATTCGTCGAGCTGGTTG
GGGATGCGTCATTGGCCCTGTTGCCGGTCGGGCCGGAAGAGATTTGCAAG
ACGATCGACCACTTGAAGCTCGCGCGTTTGCTCGACGGCTTTCGAGGCAA
ACCGGCGTTGGACCGCAAGGCTCTTGAAAAGGCAGTGGGAGGGCTCGCGC
AGTTCTTCATCGATCATCGCGACAGGGTTGTGGATATCGAGATCAATCCG
CTGATCGTTCGCGAAGACGGCAAGGGGGCGATTGCGGTCGATGTGCGGGT
TATTTGGCAGACTTGA