mRNA_P-wetherbeei_contig57770.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57770.1.1
Unique NamemRNA_P-wetherbeei_contig57770.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57770.1.1 vs. uniprot
Match: UPI0019C8E960 (Efflux RND transporter permease subunit n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI0019C8E960)

HSP 1 Score: 293 bits (751), Expect = 1.830e-90
Identity = 146/160 (91.25%), Postives = 153/160 (95.62%), Query Frame = 1 
Query:    1 LGGLAVTRMVVDFFPKIDIPVVFVGWNYPGLSAEEMERRVVIISERAYSTTVNGIDRIESNCIPGIGLVKVYFHQGTDIGASIAQINAINGTILRILPPGITPPVIIQYDPATVPIVQMVLSSKTVPEGRIFDHAFNFVRVKLFTIPGLVVPAPFGGRLR 480
            LG LAV+RMVVDFFPKIDIP+VFVGWNY GLSAEEMERRVVIISERAYSTTVNGI+RIESNCIPGIGLVKVYFH GTDIGA+IAQINAINGTILRILPPG+ PPVIIQY+PATVPIVQMV SSKTV EGR+FDHAFNFVRVKLFTIPGL VPAPFGGRLR
Sbjct:   24 LGLLAVSRMVVDFFPKIDIPIVFVGWNYQGLSAEEMERRVVIISERAYSTTVNGIERIESNCIPGIGLVKVYFHPGTDIGAAIAQINAINGTILRILPPGMQPPVIIQYNPATVPIVQMVFSSKTVSEGRMFDHAFNFVRVKLFTIPGLTVPAPFGGRLR 183
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BLAST of mRNA_P-wetherbeei_contig57770.1.1 vs. uniprot
Match: A0A2V9IZN0_9BACT (RND transporter (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9IZN0_9BACT)

HSP 1 Score: 226 bits (577), Expect = 3.530e-72
Identity = 106/160 (66.25%), Postives = 133/160 (83.12%), Query Frame = 1 
Query:    1 LGGLAVTRMVVDFFPKIDIPVVFVGWNYPGLSAEEMERRVVIISERAYSTTVNGIDRIESNCIPGIGLVKVYFHQGTDIGASIAQINAINGTILRILPPGITPPVIIQYDPATVPIVQMVLSSKTVPEGRIFDHAFNFVRVKLFTIPGLVVPAPFGGRLR 480
            +G L++TRM+VD FP IDIPVV V WNYPGLSAEEMERRVVIISERAYSTTVNGI+RIES  IPG+GL+KVYF  GT+IG +IAQI++++ T+LRI PPG+ PP IIQ++ + VP+ Q+ LSS+ +PE  + D+  NF+RV+LFTIPGL  PAPFGG+ R
Sbjct:   24 MGILSLTRMIVDIFPAIDIPVVLVAWNYPGLSAEEMERRVVIISERAYSTTVNGIERIESQSIPGVGLLKVYFQPGTEIGGAIAQISSVSSTLLRIAPPGMQPPSIIQFNASNVPVAQLTLSSRNLPEQEVADYGLNFIRVRLFTIPGLSTPAPFGGKQR 183
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BLAST of mRNA_P-wetherbeei_contig57770.1.1 vs. uniprot
Match: A0A2V7J3S3_9BACT (RND transporter (Fragment) n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7J3S3_9BACT)

HSP 1 Score: 227 bits (579), Expect = 8.390e-68
Identity = 106/160 (66.25%), Postives = 134/160 (83.75%), Query Frame = 1 
Query:    1 LGGLAVTRMVVDFFPKIDIPVVFVGWNYPGLSAEEMERRVVIISERAYSTTVNGIDRIESNCIPGIGLVKVYFHQGTDIGASIAQINAINGTILRILPPGITPPVIIQYDPATVPIVQMVLSSKTVPEGRIFDHAFNFVRVKLFTIPGLVVPAPFGGRLR 480
            LG L++TRMVVD FP IDIPVV V W+YPGLSAE+MERRVV+ISERAYSTTVNGI+R+ES  IPG+G++KVYF  GT+IGA+IAQI A++ T+LR+ PPG+ PP IIQ+  + VP+ Q+  SS+T+PE +IFD+  NF+RV+LFTIPGL  PAPFGG+ R
Sbjct:   24 LGTLSLTRMVVDIFPAIDIPVVAVVWSYPGLSAEDMERRVVLISERAYSTTVNGIERVESQSIPGVGVMKVYFQPGTEIGAAIAQIGAVSSTLLRLAPPGMQPPAIIQFSASNVPVAQLTASSRTLPEQQIFDYGLNFIRVRLFTIPGLSTPAPFGGKAR 183
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BLAST of mRNA_P-wetherbeei_contig57770.1.1 vs. uniprot
Match: A0A2V7QLD2_9BACT (RND transporter n=3 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7QLD2_9BACT)

HSP 1 Score: 231 bits (589), Expect = 1.230e-67
Identity = 110/160 (68.75%), Postives = 132/160 (82.50%), Query Frame = 1 
Query:    1 LGGLAVTRMVVDFFPKIDIPVVFVGWNYPGLSAEEMERRVVIISERAYSTTVNGIDRIESNCIPGIGLVKVYFHQGTDIGASIAQINAINGTILRILPPGITPPVIIQYDPATVPIVQMVLSSKTVPEGRIFDHAFNFVRVKLFTIPGLVVPAPFGGRLR 480
            LG L++TRM+VD FP IDIPVV V WNYPGLSAEEMERRVVIISER +STTVNGI+RIES  IPGIGL+K+YF  GTDIG +IAQI A++ TILRI PPG+ PP ++Q++ + VP+ Q+  SS T+PE RIFD+  NF+RV+LFTIPGL  PAPFGGR R
Sbjct:   24 LGTLSLTRMIVDIFPAIDIPVVAVVWNYPGLSAEEMERRVVIISERGFSTTVNGIERIESQSIPGIGLLKIYFQPGTDIGGAIAQIGALSSTILRIAPPGMQPPTLVQFNASNVPVAQLTASSATLPEDRIFDYGLNFIRVRLFTIPGLSTPAPFGGRQR 183
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BLAST of mRNA_P-wetherbeei_contig57770.1.1 vs. uniprot
Match: A0A127EX06_9HYPH (Acriflavin resistance protein n=2 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127EX06_9HYPH)

HSP 1 Score: 229 bits (584), Expect = 6.400e-67
Identity = 108/160 (67.50%), Postives = 137/160 (85.62%), Query Frame = 1 
Query:    1 LGGLAVTRMVVDFFPKIDIPVVFVGWNYPGLSAEEMERRVVIISERAYSTTVNGIDRIESNCIPGIGLVKVYFHQGTDIGASIAQINAINGTILRILPPGITPPVIIQYDPATVPIVQMVLSSKTVPEGRIFDHAFNFVRVKLFTIPGLVVPAPFGGRLR 480
            +G L+  RMVVD FP IDIPVV+V WNYPGLSAE+MERRVV+ISERAYSTTVNGI+RIES  IPG+G++KVYF QGTDIG +IAQINA N +ILRI PPGITPP +I+++ + VP+VQ+ L+S+++PE +IFD+  NF+R +LFTIPGL +PAP+GG+ R
Sbjct:   25 MGFLSAQRMVVDIFPNIDIPVVYVAWNYPGLSAEDMERRVVLISERAYSTTVNGIERIESLSIPGLGILKVYFTQGTDIGGAIAQINAQNNSILRIAPPGITPPNMIRFNASNVPVVQVTLNSRSLPEQQIFDYGLNFLRTRLFTIPGLSIPAPYGGKQR 184
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BLAST of mRNA_P-wetherbeei_contig57770.1.1 vs. uniprot
Match: A0A2U3QK62_9BACT (Acriflavin resistance protein n=1 Tax=Candidatus Sulfobium mesophilum TaxID=2016548 RepID=A0A2U3QK62_9BACT)

HSP 1 Score: 229 bits (583), Expect = 8.920e-67
Identity = 108/160 (67.50%), Postives = 134/160 (83.75%), Query Frame = 1 
Query:    1 LGGLAVTRMVVDFFPKIDIPVVFVGWNYPGLSAEEMERRVVIISERAYSTTVNGIDRIESNCIPGIGLVKVYFHQGTDIGASIAQINAINGTILRILPPGITPPVIIQYDPATVPIVQMVLSSKTVPEGRIFDHAFNFVRVKLFTIPGLVVPAPFGGRLR 480
            LG L+ TRM+VD FP IDIPVV V WNYPGLS E+MERRVV+ISERAYSTTVNGI RIES  IPGIGL+KVYF  G+DIGA+I+QI++++ TILRI PPG+ PPVI+QY+ + VP+ Q+  SS ++PE +IFD+  NF+RV+LFTIPGL +PAPFGG+ R
Sbjct:   24 LGTLSATRMIVDIFPAIDIPVVVVVWNYPGLSPEDMERRVVLISERAYSTTVNGIQRIESQSIPGIGLLKVYFQPGSDIGAAISQISSVSSTILRIAPPGMQPPVIVQYNASNVPVAQLTASSNSLPEEQIFDYGLNFIRVRLFTIPGLSIPAPFGGKNR 183
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BLAST of mRNA_P-wetherbeei_contig57770.1.1 vs. uniprot
Match: A0A2V7GS31_9BACT (RND transporter n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7GS31_9BACT)

HSP 1 Score: 228 bits (580), Expect = 2.330e-66
Identity = 106/160 (66.25%), Postives = 135/160 (84.38%), Query Frame = 1 
Query:    1 LGGLAVTRMVVDFFPKIDIPVVFVGWNYPGLSAEEMERRVVIISERAYSTTVNGIDRIESNCIPGIGLVKVYFHQGTDIGASIAQINAINGTILRILPPGITPPVIIQYDPATVPIVQMVLSSKTVPEGRIFDHAFNFVRVKLFTIPGLVVPAPFGGRLR 480
            LG L++TRMVVD FP IDIPVV V W+YPGLSAE+MERRVV+ISERAYSTTVNGI+R+ES  IPG+G++KVYF  GT+IGA+IAQI A++ T+LR+ PPG+ PP IIQ++ + VP+ Q+  SS+T+PE +IFD+  NF+RV+LFTIPGL  PAPFGG+ R
Sbjct:   24 LGTLSLTRMVVDIFPAIDIPVVAVVWSYPGLSAEDMERRVVLISERAYSTTVNGIERVESQSIPGVGVMKVYFQPGTEIGAAIAQIGAVSSTLLRLAPPGMQPPAIIQFNASNVPVAQLTASSRTLPEQQIFDYGLNFIRVRLFTIPGLSTPAPFGGKAR 183
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BLAST of mRNA_P-wetherbeei_contig57770.1.1 vs. uniprot
Match: A0A2V9KU10_9BACT (RND transporter (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9KU10_9BACT)

HSP 1 Score: 226 bits (575), Expect = 1.170e-65
Identity = 106/160 (66.25%), Postives = 133/160 (83.12%), Query Frame = 1 
Query:    1 LGGLAVTRMVVDFFPKIDIPVVFVGWNYPGLSAEEMERRVVIISERAYSTTVNGIDRIESNCIPGIGLVKVYFHQGTDIGASIAQINAINGTILRILPPGITPPVIIQYDPATVPIVQMVLSSKTVPEGRIFDHAFNFVRVKLFTIPGLVVPAPFGGRLR 480
            +G L++TRM+VD FP IDIPVV V WNYPGLSAEEMERRVVIISERAYSTTVNGI+RIES  IPG+GL+KVYF  GT+IG +IAQI++++ T+LRI PPG+ PP IIQ++ + VP+ Q+ LSS+ +PE  + D+  NF+RV+LFTIPGL  PAPFGG+ R
Sbjct:   24 MGILSLTRMIVDIFPAIDIPVVLVAWNYPGLSAEEMERRVVIISERAYSTTVNGIERIESQSIPGVGLLKVYFQPGTEIGGAIAQISSVSSTLLRIAPPGMQPPSIIQFNASNVPVPQLTLSSRNLPEQEVADYGLNFIRVRLFTIPGLSTPAPFGGKQR 183
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BLAST of mRNA_P-wetherbeei_contig57770.1.1 vs. uniprot
Match: A0A5A9XKY6_9DELT (Efflux RND transporter permease subunit n=5 Tax=Geobacteraceae TaxID=213422 RepID=A0A5A9XKY6_9DELT)

HSP 1 Score: 225 bits (573), Expect = 2.190e-65
Identity = 105/160 (65.62%), Postives = 132/160 (82.50%), Query Frame = 1 
Query:    1 LGGLAVTRMVVDFFPKIDIPVVFVGWNYPGLSAEEMERRVVIISERAYSTTVNGIDRIESNCIPGIGLVKVYFHQGTDIGASIAQINAINGTILRILPPGITPPVIIQYDPATVPIVQMVLSSKTVPEGRIFDHAFNFVRVKLFTIPGLVVPAPFGGRLR 480
            LG L++TRM+VD FP IDIPVV V WNYPGLS E+MERR+V+ISERAYSTTVNGI RIES  IPG G++KVYF  GT+IGA+I+QI++++ T+LRI PPG  PP I+Q++ + VP+ Q+ LSSK +PE +IFD+  NF+RVKLFTIPGL  PAPFGG+ R
Sbjct:   24 LGTLSLTRMIVDIFPVIDIPVVVVVWNYPGLSPEDMERRIVLISERAYSTTVNGISRIESQSIPGTGVLKVYFQPGTEIGAAISQISSVSSTLLRIAPPGTQPPAIVQFNASNVPVAQLTLSSKNLPEEKIFDYGLNFIRVKLFTIPGLSTPAPFGGKSR 183
[Close]
BLAST of mRNA_P-wetherbeei_contig57770.1.1 vs. uniprot
Match: A0A8J7IY40_9DELT (Efflux RND transporter permease subunit n=1 Tax=Geomesophilobacter sediminis TaxID=2798584 RepID=A0A8J7IY40_9DELT)

HSP 1 Score: 224 bits (570), Expect = 5.490e-65
Identity = 104/160 (65.00%), Postives = 133/160 (83.12%), Query Frame = 1 
Query:    1 LGGLAVTRMVVDFFPKIDIPVVFVGWNYPGLSAEEMERRVVIISERAYSTTVNGIDRIESNCIPGIGLVKVYFHQGTDIGASIAQINAINGTILRILPPGITPPVIIQYDPATVPIVQMVLSSKTVPEGRIFDHAFNFVRVKLFTIPGLVVPAPFGGRLR 480
            LG L+++RM+VD FP IDIPVV V WNYPGLS E+MERRVV+ISERAYSTTVNGI RIES  IPG+GL+K+YF  GT+IGA+I+QI +++ T+LRI PPG+ PPVI+Q++ + VP+ Q+  SS T+PE +IFD+  NF+RV+LFTIPGL  PAPFGG+ R
Sbjct:   24 LGALSLSRMLVDIFPVIDIPVVAVAWNYPGLSPEDMERRVVLISERAYSTTVNGIARIESQSIPGVGLLKIYFQPGTEIGAAISQIASVSNTLLRIAPPGMQPPVIVQFNASNVPVAQLTASSTTLPEEQIFDYGLNFIRVRLFTIPGLSTPAPFGGKTR 183
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57770.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019C8E9601.830e-9091.25Efflux RND transporter permease subunit n=1 Tax=Pr... [more]
A0A2V9IZN0_9BACT3.530e-7266.25RND transporter (Fragment) n=1 Tax=Acidobacteria b... [more]
A0A2V7J3S3_9BACT8.390e-6866.25RND transporter (Fragment) n=2 Tax=Gemmatimonadete... [more]
A0A2V7QLD2_9BACT1.230e-6768.75RND transporter n=3 Tax=Gemmatimonadetes bacterium... [more]
A0A127EX06_9HYPH6.400e-6767.50Acriflavin resistance protein n=2 Tax=Rhodoplanes ... [more]
A0A2U3QK62_9BACT8.920e-6767.50Acriflavin resistance protein n=1 Tax=Candidatus S... [more]
A0A2V7GS31_9BACT2.330e-6666.25RND transporter n=2 Tax=Gemmatimonadetes bacterium... [more]
A0A2V9KU10_9BACT1.170e-6566.25RND transporter (Fragment) n=1 Tax=Acidobacteria b... [more]
A0A5A9XKY6_9DELT2.190e-6565.63Efflux RND transporter permease subunit n=5 Tax=Ge... [more]
A0A8J7IY40_9DELT5.490e-6565.00Efflux RND transporter permease subunit n=1 Tax=Ge... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57770contigP-wetherbeei_contig57770:1..480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1121920.AUAU01000026_gene1474
PFAMsACR_tran
Model size480
Max annot lvl57723|Acidobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.11e-57
EggNOG OGsCOG0841@1|root,COG0841@2|Bacteria,3Y35W@57723|Acidobacteria
DescriptionBelongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Cds size456
COG categoryV
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186856.438953-UTR-P-wetherbeei_contig57770:0..241683186856.438953-UTR-P-wetherbeei_contig57770:0..24Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig57770 1..24 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186856.450174-CDS-P-wetherbeei_contig57770:24..4801683186856.450174-CDS-P-wetherbeei_contig57770:24..480Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57770 25..480 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57770.1.1prot_P-wetherbeei_contig57770.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57770 25..480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57770.1.1

>prot_P-wetherbeei_contig57770.1.1 ID=prot_P-wetherbeei_contig57770.1.1|Name=mRNA_P-wetherbeei_contig57770.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
MVVDFFPKIDIPVVFVGWNYPGLSAEEMERRVVIISERAYSTTVNGIDRI
ESNCIPGIGLVKVYFHQGTDIGASIAQINAINGTILRILPPGITPPVIIQ
YDPATVPIVQMVLSSKTVPEGRIFDHAFNFVRVKLFTIPGLVVPAPFGGR
LR
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mRNA from alignment at P-wetherbeei_contig57770:1..480+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57770.1.1 ID=mRNA_P-wetherbeei_contig57770.1.1|Name=mRNA_P-wetherbeei_contig57770.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig57770:1..480+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGGCGGCCTGGCGGTCACGCGCATGGTGGTCGATTTTTTCCCCAAGAT
CGACATTCCAGTCGTCTTTGTCGGCTGGAATTACCCCGGCCTATCCGCCG
AGGAAATGGAGCGCCGCGTCGTCATCATCAGTGAGCGCGCCTATTCGACG
ACGGTCAATGGCATCGACCGCATCGAATCCAACTGCATTCCCGGCATCGG
CCTGGTCAAGGTGTATTTCCACCAGGGCACCGACATCGGTGCGTCGATCG
CGCAGATCAACGCCATCAACGGCACCATTCTGCGCATCCTGCCGCCAGGC
ATCACGCCGCCGGTGATCATCCAGTACGACCCCGCGACAGTGCCCATCGT
GCAAATGGTGCTGTCCAGCAAAACCGTGCCGGAAGGCCGCATCTTCGACC
ATGCATTCAATTTCGTCCGGGTGAAGCTGTTCACCATCCCCGGGCTGGTT
GTACCTGCCCCGTTTGGCGGCCGCTTGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57770:1..480+

>mRNA_P-wetherbeei_contig57770.1.1 ID=mRNA_P-wetherbeei_contig57770.1.1|Name=mRNA_P-wetherbeei_contig57770.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig57770:1..480+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGTCGATTTTTTCCCCAAGATCGACATTCCAGTCGTCTTTGTCGG
CTGGAATTACCCCGGCCTATCCGCCGAGGAAATGGAGCGCCGCGTCGTCA
TCATCAGTGAGCGCGCCTATTCGACGACGGTCAATGGCATCGACCGCATC
GAATCCAACTGCATTCCCGGCATCGGCCTGGTCAAGGTGTATTTCCACCA
GGGCACCGACATCGGTGCGTCGATCGCGCAGATCAACGCCATCAACGGCA
CCATTCTGCGCATCCTGCCGCCAGGCATCACGCCGCCGGTGATCATCCAG
TACGACCCCGCGACAGTGCCCATCGTGCAAATGGTGCTGTCCAGCAAAAC
CGTGCCGGAAGGCCGCATCTTCGACCATGCATTCAATTTCGTCCGGGTGA
AGCTGTTCACCATCCCCGGGCTGGTTGTACCTGCCCCGTTTGGCGGCCGC
TTGCGC
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