mRNA_P-wetherbeei_contig12583.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12583.1.1
Unique NamemRNA_P-wetherbeei_contig12583.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12583.1.1 vs. uniprot
Match: A0A835ZER9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZER9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 8.950e-12
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   25 GEGRVVARLASGKRVVGDAMLYTMGRQGNTDTLGLGAVGLQVRAR 159
            G GRVVA L+SGK+VVGDAMLY MGRQGNTD+L LG+VGL+   R
Sbjct:  337 GRGRVVAHLSSGKKVVGDAMLYAMGRQGNTDSLSLGSVGLETDNR 381
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BLAST of mRNA_P-wetherbeei_contig12583.1.1 vs. uniprot
Match: A0A8K1C723_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C723_PYTOL)

HSP 1 Score: 60.1 bits (144), Expect = 3.390e-9
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    4 IKSVELVGEGRVVARLASGKRVVGDAMLYTMGRQGNTDTLGLGAVGL 144
            IK+VE    G V+ +L SGK ++GD +LYT+GRQGNTD+L L AVGL
Sbjct:  305 IKTVEKADNGEVIVKLNSGKTIIGDGLLYTLGRQGNTDSLNLEAVGL 351
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BLAST of mRNA_P-wetherbeei_contig12583.1.1 vs. uniprot
Match: A0A3B8Z8Z9_9DELT (Si-specific NAD(P)(+) transhydrogenase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3B8Z8Z9_9DELT)

HSP 1 Score: 59.7 bits (143), Expect = 4.630e-9
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 QIKSVELVGEGRVVARLASGKRVVGDAMLYTMGRQGNTDTLGLGAVGLQVRAR 159
            ++ SVE+  + RV A L SGKRV GD +LYT+GR  NTD+LGLG +G++  AR
Sbjct:  241 KVTSVEIDSKDRVSALLESGKRVTGDTLLYTVGRDANTDSLGLGLLGIETDAR 293
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BLAST of mRNA_P-wetherbeei_contig12583.1.1 vs. uniprot
Match: D7FHH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH4_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 4.630e-9
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 QIKSVELVGEGRVVARLASGKRVVGDAMLYTMGRQGNTDTLGLGAVGLQVRAR 159
            +I+  +  G  +V+A LASGKRVVGDA+LYTMGRQGNTD++ L   GL+   R
Sbjct:  252 KIEKKDSNGGVKVIAHLASGKRVVGDALLYTMGRQGNTDSMDLARAGLEADKR 304
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BLAST of mRNA_P-wetherbeei_contig12583.1.1 vs. uniprot
Match: A0A2D4CFW3_PYTIN (Soluble pyridine nucleotide transhydrogenase putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFW3_PYTIN)

HSP 1 Score: 59.7 bits (143), Expect = 4.650e-9
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    4 IKSVELVGEGRVVARLASGKRVVGDAMLYTMGRQGNTDTLGLGAVGLQVRAR 159
            +KSVE    G VV +L SGK +V D +LYT+GRQGNTD L L AVGL+   R
Sbjct:  311 VKSVEKAANGEVVVKLNSGKTLVADGLLYTVGRQGNTDGLNLAAVGLEADKR 362
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BLAST of mRNA_P-wetherbeei_contig12583.1.1 vs. uniprot
Match: A0A2D4CH35_PYTIN (Soluble pyridine nucleotide transhydrogenase putative (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CH35_PYTIN)

HSP 1 Score: 59.7 bits (143), Expect = 4.660e-9
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    4 IKSVELVGEGRVVARLASGKRVVGDAMLYTMGRQGNTDTLGLGAVGLQVRAR 159
            +KSVE    G VV +L SGK +V D +LYT+GRQGNTD L L AVGL+   R
Sbjct:  846 VKSVEKAANGEVVVKLNSGKTLVADGLLYTVGRQGNTDGLNLAAVGLEADKR 897
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BLAST of mRNA_P-wetherbeei_contig12583.1.1 vs. uniprot
Match: A0A2D4BET8_PYTIN (Soluble pyridine nucleotide transhydrogenase putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BET8_PYTIN)

HSP 1 Score: 59.7 bits (143), Expect = 4.670e-9
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    4 IKSVELVGEGRVVARLASGKRVVGDAMLYTMGRQGNTDTLGLGAVGLQVRAR 159
            +KSVE    G VV +L SGK +V D +LYT+GRQGNTD L L AVGL+   R
Sbjct:  311 VKSVEKAANGEVVVKLNSGKTLVADGLLYTVGRQGNTDGLNLAAVGLEADKR 362
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BLAST of mRNA_P-wetherbeei_contig12583.1.1 vs. uniprot
Match: A0A7V5RAN4_9DELT (Si-specific NAD(P)(+) transhydrogenase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V5RAN4_9DELT)

HSP 1 Score: 59.3 bits (142), Expect = 6.330e-9
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 QIKSVELVGEGRVVARLASGKRVVGDAMLYTMGRQGNTDTLGLGAVGLQVRAR 159
            Q+  + + G+GRVV RLASGK VV + +LYTMGR GNTD L L AVGL+   R
Sbjct:  237 QVTGITVEGKGRVVTRLASGKIVVTEKLLYTMGRVGNTDRLNLEAVGLEADDR 289
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BLAST of mRNA_P-wetherbeei_contig12583.1.1 vs. uniprot
Match: A0A1F8XLI5_9DELT (NAD(P)(+) transhydrogenase n=1 Tax=Deltaproteobacteria bacterium GWA2_55_10 TaxID=1797809 RepID=A0A1F8XLI5_9DELT)

HSP 1 Score: 58.5 bits (140), Expect = 1.180e-8
Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 QIKSVELVGEGRVVARLASGKRVVGDAMLYTMGRQGNTDTLGLGAVGLQVRAR 159
            ++  +++ G+GRV  RL SGK +V + +LYTMGR GN+DTL L A+GL+  A+
Sbjct:  237 EVTGIKVEGQGRVATRLDSGKVIVSEKLLYTMGRMGNSDTLNLAAIGLKADAK 289
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BLAST of mRNA_P-wetherbeei_contig12583.1.1 vs. uniprot
Match: K3WL68_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WL68_GLOUD)

HSP 1 Score: 57.8 bits (138), Expect = 2.220e-8
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    4 IKSVELVGEGRVVARLASGKRVVGDAMLYTMGRQGNTDTLGLGAVGLQVRAR 159
            IKSVE V  G V+  L SGK +VGD +LYT+GRQGNTD L L AVGL+   R
Sbjct:  305 IKSVEKVN-GEVIVHLNSGKTLVGDGLLYTLGRQGNTDGLNLPAVGLEADKR 355
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12583.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZER9_9STRA8.950e-1273.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8K1C723_PYTOL3.390e-959.57Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3B8Z8Z9_9DELT4.630e-954.72Si-specific NAD(P)(+) transhydrogenase n=1 Tax=Del... [more]
D7FHH4_ECTSI4.630e-956.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2D4CFW3_PYTIN4.650e-957.69Soluble pyridine nucleotide transhydrogenase putat... [more]
A0A2D4CH35_PYTIN4.660e-957.69Soluble pyridine nucleotide transhydrogenase putat... [more]
A0A2D4BET8_PYTIN4.670e-957.69Soluble pyridine nucleotide transhydrogenase putat... [more]
A0A7V5RAN4_9DELT6.330e-958.49Si-specific NAD(P)(+) transhydrogenase n=1 Tax=Del... [more]
A0A1F8XLI5_9DELT1.180e-849.06NAD(P)(+) transhydrogenase n=1 Tax=Deltaproteobact... [more]
K3WL68_GLOUD2.220e-861.54Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12583contigP-wetherbeei_contig12583:72..230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FHH4
PFAMsPyr_redox_2,Pyr_redox_dim
Model size161
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue7.6e-10
EggNOG OGsCOG1249@1|root,KOG1335@2759|Eukaryota
Descriptiondihydrolipoyl dehydrogenase activity
Cds size159
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185953.5062726-CDS-P-wetherbeei_contig12583:71..2301683185953.5062726-CDS-P-wetherbeei_contig12583:71..230Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12583 72..230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12583.1.1prot_P-wetherbeei_contig12583.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12583 72..230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12583.1.1

>prot_P-wetherbeei_contig12583.1.1 ID=prot_P-wetherbeei_contig12583.1.1|Name=mRNA_P-wetherbeei_contig12583.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=53bp
QIKSVELVGEGRVVARLASGKRVVGDAMLYTMGRQGNTDTLGLGAVGLQV
RAR
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mRNA from alignment at P-wetherbeei_contig12583:72..230-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12583.1.1 ID=mRNA_P-wetherbeei_contig12583.1.1|Name=mRNA_P-wetherbeei_contig12583.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig12583:72..230- (Phaeothamnion wetherbeei SAG_119_79)
CAGATAAAGTCTGTGGAGCTGGTGGGCGAGGGGCGCGTGGTGGCACGGCT
AGCGAGCGGGAAGCGCGTGGTGGGAGATGCCATGCTCTACACCATGGGCC
GCCAGGGCAACACCGACACGCTCGGCCTCGGCGCCGTCGGACTCCAGGTG
CGAGCAAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12583:72..230-

>mRNA_P-wetherbeei_contig12583.1.1 ID=mRNA_P-wetherbeei_contig12583.1.1|Name=mRNA_P-wetherbeei_contig12583.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig12583:72..230- (Phaeothamnion wetherbeei SAG_119_79)
CAGATAAAGTCTGTGGAGCTGGTGGGCGAGGGGCGCGTGGTGGCACGGCT
AGCGAGCGGGAAGCGCGTGGTGGGAGATGCCATGCTCTACACCATGGGCC
GCCAGGGCAACACCGACACGCTCGGCCTCGGCGCCGTCGGACTCCAGGTG
CGAGCAAGG
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