mRNA_P-wetherbeei_contig5776.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5776.2.1
Unique NamemRNA_P-wetherbeei_contig5776.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5776.2.1 vs. uniprot
Match: D7FJD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJD2_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 1.390e-22
Identity = 112/363 (30.85%), Postives = 149/363 (41.05%), Query Frame = 1 
Query:  805 RITEDDG--SGSPVRRHCQRQAAAAAVHLEQQCTFSPRINDDNHSSSAGRWRXXXXXXXXXXXTPERLAQLARDREAAYSEXXXXXXXXXXXXQ-RACTFRPNLCH----RREKVGARDAGGGXXXXXXXXXXXDGRLEAVHERLHRAAREREAATAAARHLIQEAELTECTF------W-------PRLVTTGAMPAVAEAAAPQXXXXXXXXXXXXXXXXXQSRAPLHERVWEVQRAKEERRRLLEAEQAEREGSTFQPR-INSISVRLAAHAQHAHGAARNNAATASVAAGGAEAETVAE-------RLMREAXXXXXXXXXXXXXXXXXXXXXSNYEPQLSSGTRRLVRQRPQLRAPFE 1809
            R+ E D   +GS   R      A A   LE +  F P+  ++ + SS  + +           +  R+ +LARDR+A YS+            + + CTF PN+      RR   G    G G             R   +HERLH+ AREREAA A A H ++   L ECTF      W       P L TTGA+PA                             PLH+RVWEV+R +E + RLL A++ EREG+TF P  +  +S RLA               T    AGG       E       RL  +A                     S +EP +S GT+ LVR+RP L+APFE
Sbjct:  301 RVEESDRHPTGSANGRFVDEDDAMATARLEDRLAFRPKERENKNRSSLQQRKPRAG-------SERRIKELARDRQALYSDRERRRKELQEEAETKECTFHPNIVSSSAARRGAAGHGSGGAGA------------RRPPLHERLHKEAREREAARALAHHHLENEALRECTFQARGAWWGGDGGREPTLNTTGAVPAA-------------------------DHRPLHQRVWEVEREREHKLRLLVADKEEREGATFAPPPMGRVSERLAD--------------TRPAFAGGXXXXXCGEGVGRSATRLQEQAMWARERRRLRVQEHEEAEARMSTFEPSISRGTKSLVRKRPDLQAPFE 605
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5776.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJD2_ECTSI1.390e-2230.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5776contigP-wetherbeei_contig5776:659..2467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FJD2
Model size1810
Max annot lvl2759|Eukaryota
KEGG koko:K18626
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.27e-23
EggNOG OGs2CMDY@1|root,2S3XU@2759|Eukaryota
Cds size1809
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186856.187239-CDS-P-wetherbeei_contig5776:658..24671683186856.187239-CDS-P-wetherbeei_contig5776:658..2467Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5776 659..2467 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5776.2.1prot_P-wetherbeei_contig5776.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5776 659..2467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5776.2.1

>prot_P-wetherbeei_contig5776.2.1 ID=prot_P-wetherbeei_contig5776.2.1|Name=mRNA_P-wetherbeei_contig5776.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=603bp
MDFLLEVEQEILLAEERLRRHASEAREESAFALQNEDEHAWGLRCQTRGA
GQRDSTIAAAPLRGENGIPGRAAAESTLWASGGPAEHNDGLEPKVTDENR
YRGAPEREQLIARLLIERELRIAHTGTSDAVGGAGREGCGGARNDGGSSQ
GGDDGGVYFASDLLAVPADADVGLEGPASSEDGVSGFRHGGGRREVDGGE
QTSGAGGHFYYDMYGIDLPRPLPPPMKQHRPQQASLQPPTAPSPPKWWSG
TPPPTRTTTSAAAPTSPTRITEDDGSGSPVRRHCQRQAAAAAVHLEQQCT
FSPRINDDNHSSSAGRWRQQRQRPPPAPPTPERLAQLARDREAAYSERER
LRLEAEAEAQRACTFRPNLCHRREKVGARDAGGGGSSGVGIGGGGDGRLE
AVHERLHRAAREREAATAAARHLIQEAELTECTFWPRLVTTGAMPAVAEA
AAPQQRRCIGSGGGSSGGGGGQSRAPLHERVWEVQRAKEERRRLLEAEQA
EREGSTFQPRINSISVRLAAHAQHAHGAARNNAATASVAAGGAEAETVAE
RLMREAARAAERLQRRREEVDEEERRRSNYEPQLSSGTRRLVRQRPQLRA
PFE
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mRNA from alignment at P-wetherbeei_contig5776:659..2467-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5776.2.1 ID=mRNA_P-wetherbeei_contig5776.2.1|Name=mRNA_P-wetherbeei_contig5776.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1809bp|location=Sequence derived from alignment at P-wetherbeei_contig5776:659..2467- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACTTCCTGCTCGAAGTGGAGCAGGAGATACTACTTGCGGAGGAGCG
ATTGCGGCGTCATGCTTCGGAAGCGCGCGAGGAAAGCGCGTTTGCCCTTC
AAAACGAGGACGAGCACGCTTGGGGATTGCGATGCCAGACGCGGGGCGCC
GGTCAACGCGACTCTACTATCGCAGCCGCGCCGTTACGAGGAGAAAACGG
AATACCTGGCCGTGCTGCAGCCGAAAGCACATTATGGGCGTCTGGCGGCC
CTGCTGAGCACAATGACGGTTTGGAGCCCAAAGTGACTGATGAGAACCGC
TACCGTGGTGCGCCCGAGCGCGAACAGCTTATTGCGAGGCTCCTGATAGA
ACGTGAATTACGTATTGCCCACACTGGAACGTCTGATGCCGTTGGCGGCG
CAGGCCGCGAAGGCTGTGGTGGAGCCCGTAATGATGGCGGAAGCAGCCAA
GGCGGCGACGACGGCGGCGTATACTTTGCTTCGGACCTGCTTGCCGTGCC
AGCGGATGCTGACGTTGGTTTGGAAGGACCGGCGTCGAGTGAGGACGGCG
TCAGCGGCTTTCGACATGGTGGAGGCAGAAGGGAGGTGGATGGAGGCGAG
CAGACGAGCGGCGCCGGCGGCCACTTTTACTATGATATGTACGGCATCGA
TCTGCCGCGGCCACTCCCGCCACCGATGAAACAGCACCGGCCACAGCAGG
CGTCGTTGCAGCCGCCCACGGCGCCGTCGCCGCCAAAGTGGTGGTCTGGC
ACGCCGCCGCCGACACGAACGACCACTTCGGCTGCTGCTCCAACCTCGCC
GACACGCATCACAGAGGATGACGGCAGCGGGTCTCCGGTGAGGCGGCACT
GCCAGCGCCAGGCCGCTGCGGCTGCCGTGCACTTGGAGCAGCAATGCACC
TTCTCCCCGCGCATCAACGACGACAACCACAGCAGCTCCGCCGGGCGATG
GCGGCAACAGCGGCAGCGACCGCCGCCGGCGCCGCCGACGCCCGAACGCC
TCGCCCAGCTCGCCCGGGACCGCGAAGCGGCCTACAGCGAGCGGGAACGG
CTCCGCCTGGAGGCCGAGGCGGAAGCGCAGCGTGCCTGCACCTTCCGCCC
GAATCTGTGCCACCGCCGCGAGAAGGTCGGCGCTCGCGATGCCGGTGGTG
GCGGTAGCAGTGGCGTCGGCATTGGCGGCGGCGGCGATGGGAGGCTAGAA
GCGGTGCACGAGCGGCTGCATCGCGCGGCCCGCGAGCGAGAGGCCGCCAC
CGCCGCGGCGCGGCACCTGATCCAGGAGGCCGAGCTGACCGAGTGCACCT
TTTGGCCACGCCTCGTCACGACAGGCGCCATGCCCGCCGTGGCGGAAGCC
GCTGCGCCGCAGCAGCGACGATGTATCGGCAGCGGCGGTGGTAGCAGCGG
TGGCGGCGGCGGCCAGTCGCGGGCGCCACTGCACGAGCGCGTCTGGGAGG
TGCAGCGTGCTAAGGAGGAGCGGCGACGGCTGCTCGAGGCGGAGCAGGCG
GAGAGGGAGGGCTCCACCTTCCAGCCGCGCATCAACAGCATCAGCGTCAG
GCTTGCCGCGCATGCGCAGCACGCGCACGGCGCCGCGAGGAATAATGCTG
CGACAGCGAGCGTGGCGGCTGGCGGCGCCGAGGCGGAAACAGTGGCGGAG
CGGCTGATGCGAGAGGCGGCACGCGCGGCGGAGCGATTGCAGCGGCGGCG
GGAAGAGGTAGACGAAGAGGAGCGACGCCGCAGCAACTACGAGCCGCAGC
TAAGCTCCGGCACGCGCCGCCTCGTGCGGCAGCGGCCGCAGCTTCGGGCG
CCCTTCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5776:659..2467-

>mRNA_P-wetherbeei_contig5776.2.1 ID=mRNA_P-wetherbeei_contig5776.2.1|Name=mRNA_P-wetherbeei_contig5776.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1809bp|location=Sequence derived from alignment at P-wetherbeei_contig5776:659..2467- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACTTCCTGCTCGAAGTGGAGCAGGAGATACTACTTGCGGAGGAGCG
ATTGCGGCGTCATGCTTCGGAAGCGCGCGAGGAAAGCGCGTTTGCCCTTC
AAAACGAGGACGAGCACGCTTGGGGATTGCGATGCCAGACGCGGGGCGCC
GGTCAACGCGACTCTACTATCGCAGCCGCGCCGTTACGAGGAGAAAACGG
AATACCTGGCCGTGCTGCAGCCGAAAGCACATTATGGGCGTCTGGCGGCC
CTGCTGAGCACAATGACGGTTTGGAGCCCAAAGTGACTGATGAGAACCGC
TACCGTGGTGCGCCCGAGCGCGAACAGCTTATTGCGAGGCTCCTGATAGA
ACGTGAATTACGTATTGCCCACACTGGAACGTCTGATGCCGTTGGCGGCG
CAGGCCGCGAAGGCTGTGGTGGAGCCCGTAATGATGGCGGAAGCAGCCAA
GGCGGCGACGACGGCGGCGTATACTTTGCTTCGGACCTGCTTGCCGTGCC
AGCGGATGCTGACGTTGGTTTGGAAGGACCGGCGTCGAGTGAGGACGGCG
TCAGCGGCTTTCGACATGGTGGAGGCAGAAGGGAGGTGGATGGAGGCGAG
CAGACGAGCGGCGCCGGCGGCCACTTTTACTATGATATGTACGGCATCGA
TCTGCCGCGGCCACTCCCGCCACCGATGAAACAGCACCGGCCACAGCAGG
CGTCGTTGCAGCCGCCCACGGCGCCGTCGCCGCCAAAGTGGTGGTCTGGC
ACGCCGCCGCCGACACGAACGACCACTTCGGCTGCTGCTCCAACCTCGCC
GACACGCATCACAGAGGATGACGGCAGCGGGTCTCCGGTGAGGCGGCACT
GCCAGCGCCAGGCCGCTGCGGCTGCCGTGCACTTGGAGCAGCAATGCACC
TTCTCCCCGCGCATCAACGACGACAACCACAGCAGCTCCGCCGGGCGATG
GCGGCAACAGCGGCAGCGACCGCCGCCGGCGCCGCCGACGCCCGAACGCC
TCGCCCAGCTCGCCCGGGACCGCGAAGCGGCCTACAGCGAGCGGGAACGG
CTCCGCCTGGAGGCCGAGGCGGAAGCGCAGCGTGCCTGCACCTTCCGCCC
GAATCTGTGCCACCGCCGCGAGAAGGTCGGCGCTCGCGATGCCGGTGGTG
GCGGTAGCAGTGGCGTCGGCATTGGCGGCGGCGGCGATGGGAGGCTAGAA
GCGGTGCACGAGCGGCTGCATCGCGCGGCCCGCGAGCGAGAGGCCGCCAC
CGCCGCGGCGCGGCACCTGATCCAGGAGGCCGAGCTGACCGAGTGCACCT
TTTGGCCACGCCTCGTCACGACAGGCGCCATGCCCGCCGTGGCGGAAGCC
GCTGCGCCGCAGCAGCGACGATGTATCGGCAGCGGCGGTGGTAGCAGCGG
TGGCGGCGGCGGCCAGTCGCGGGCGCCACTGCACGAGCGCGTCTGGGAGG
TGCAGCGTGCTAAGGAGGAGCGGCGACGGCTGCTCGAGGCGGAGCAGGCG
GAGAGGGAGGGCTCCACCTTCCAGCCGCGCATCAACAGCATCAGCGTCAG
GCTTGCCGCGCATGCGCAGCACGCGCACGGCGCCGCGAGGAATAATGCTG
CGACAGCGAGCGTGGCGGCTGGCGGCGCCGAGGCGGAAACAGTGGCGGAG
CGGCTGATGCGAGAGGCGGCACGCGCGGCGGAGCGATTGCAGCGGCGGCG
GGAAGAGGTAGACGAAGAGGAGCGACGCCGCAGCAACTACGAGCCGCAGC
TAAGCTCCGGCACGCGCCGCCTCGTGCGGCAGCGGCCGCAGCTTCGGGCG
CCCTTCGAG
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