mRNA_P-wetherbeei_contig5773.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5773.4.1
Unique NamemRNA_P-wetherbeei_contig5773.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5773.4.1 vs. uniprot
Match: A0A838JMH5_9BURK (TRAP transporter large permease subunit n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A838JMH5_9BURK)

HSP 1 Score: 507 bits (1306), Expect = 5.240e-173
Identity = 295/430 (68.60%), Postives = 336/430 (78.14%), Query Frame = 1
Query:    1 IVLAKIKPSLMPPLSEEDRRVALPPVAESLERSTGPRALTSLAAALRGRADPALPRGTILGQFGITLLPLLTFVVFMGTMYYVFTSPAAQVDTTGIQAMGIAGGDAA---QASSDXXXXXXXXXXXXXXXXXXXXXKEAEPAAPAQXXXXAKP------APKVELERTPGPAAAAA--ERLPAPIGYWIALALGALAVAVFYRIFSFARLEIFKMLLGSFFPLAMLIVAVLGSIVFGLATPSEAAAAGALGGLLLAAAYGRLNLGVVRESAFLTAKTSAMVCWLFVGSSIFSASFALLGGQEIIEHWVLSLGLTPVQFLVLAQVIIFLLGWPLEWTEIIVIFMPIFIPLLPKFGIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVAPRHVTLNQIFAGMMPFMAIQVFAVFLLYQFPAIGMWLPSVLY 1257
            I LAKIKPSLMPPLS  DR V+LP  A++L +++G RAL +L  AL+GR +  +P  TIL Q G+ LLP L  V+ MG MY V T+P   V+T GIQAMG+AG DA+   QA+ D                     KE E  A  Q    A P      A + + + +   AAAAA  ER+ AP GYW+ALA+GA+A+AVFYR+FSF R+E+FKMLL SFFPLA+LI AVLGSIVFGLATPSEAAAAGALGGLLLAAAYGRLN  VVRES +LTAKTSAMVCWLFVGSSIFSA+FALLGGQEIIEHWVLSLGLTP+QF++LAQVIIFLLGWPLEWTEIIVIFMPIFIPLL KFGIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVAP+HVTLNQIFAGM+PF+AIQV A+ LLY FPAIG+WLP+ LY
Sbjct:  226 IALAKIKPSLMPPLSVADRVVSLPKYAQALSKTSGARALPALVFALKGRRNADVPTRTILAQLGVALLPALAVVLIMGLMYRVVTTPERLVETGGIQAMGMAGDDASAAEQAAEDSSGL-----------------KEPEAEALPQGQPQADPGTIENKAAQGQAKESAKAAAAAAPGERVAAPAGYWLALAVGAIALAVFYRLFSFPRVEVFKMLLTSFFPLAILIFAVLGSIVFGLATPSEAAAAGALGGLLLAAAYGRLNFPVVRESVYLTAKTSAMVCWLFVGSSIFSAAFALLGGQEIIEHWVLSLGLTPIQFMILAQVIIFLLGWPLEWTEIIVIFMPIFIPLLAKFGIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVAPKHVTLNQIFAGMLPFLAIQVLALVLLYVFPAIGLWLPNYLY 638          
BLAST of mRNA_P-wetherbeei_contig5773.4.1 vs. uniprot
Match: A0A259KIM0_9BURK (C4-dicarboxylate ABC transporter n=3 Tax=Burkholderiales TaxID=80840 RepID=A0A259KIM0_9BURK)

HSP 1 Score: 459 bits (1180), Expect = 5.470e-154
Identity = 259/420 (61.67%), Postives = 309/420 (73.57%), Query Frame = 1
Query:    1 IVLAKIKPSLMPPLSEEDRRVALPPVAESLERSTGPRALTSLAAALRGRADPALPRGTILGQFGITLLPLLTFVVFMGTMYYVFTSPAAQVDTTGIQAMGIAGGDAAQASSDXXXXXXXXXXXXXXXXXXXXXKEAEPAAP-AQXXXXAKPAPKVELERTPGPAAAAAERLPAPIGYWIALALGALAVAVFYRIFSFARLEIFKMLLGSFFPLAMLIVAVLGSIVFGLATPSEAAAAGALGGLLLAAAYGRLNLGVVRESAFLTAKTSAMVCWLFVGSSIFSASFALLGGQEIIEHWVLSLGLTPVQFLVLAQVIIFLLGWPLEWTEIIVIFMPIFIPLLPKFGIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVAPRHVTLNQIFAGMMPFMAIQVFAVFLLYQFPAIGMWLPSVLY 1257
            I+LAK+KP + PP+S EDR V LPPVA  +  +   + L  L  A++G+ + A+P   +L Q GI LLP ++ +V MG ++   T+PA   +T G+ AMG    +A  A  +                      +A P    A     A+ AP  +    P   AAA ERL AP  +WI L   A+A+A+FY  FSFARLEIFKMLLGSFFPLA++I+AVLG+IVFGLATP+EAAA G++GGLLLA AY RLN+ V+RES +LTAKTSAMVCWLFVGSSIFSA+FALLGGQE+I  WVL + LTP QF++LAQV+IFLLGWPLEWTEIIVIFMPIFIPLLP F IDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGV+P HVTLNQIFAGM+PFMAIQVFA+FLLY FPAIGMWLP+VLY
Sbjct:  231 IILAKLKPHMAPPMSAEDRYVPLPPVAHEVSMTISDKVLPGLIGAIKGKRNAAVPMNELLKQLGIALLPAISALVIMGAIFMAVTAPAPLEETQGVVAMGEGFDEAPSAEEEGALAEPEGDGL-----------QAPPGTDDAAAKVVAEAAPSAQA--APAEPAAAQERLDAPASFWIGLVSVAVALAIFYAYFSFARLEIFKMLLGSFFPLAIMILAVLGTIVFGLATPTEAAAMGSMGGLLLAGAYRRLNMTVMRESVYLTAKTSAMVCWLFVGSSIFSAAFALLGGQELINTWVLGMDLTPTQFMILAQVVIFLLGWPLEWTEIIVIFMPIFIPLLPHFNIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVSPPHVTLNQIFAGMLPFMAIQVFAIFLLYMFPAIGMWLPNVLY 637          
BLAST of mRNA_P-wetherbeei_contig5773.4.1 vs. uniprot
Match: A0A6L9KLY5_9BURK (TRAP transporter large permease subunit n=2 Tax=Rhodoferax TaxID=28065 RepID=A0A6L9KLY5_9BURK)

HSP 1 Score: 457 bits (1175), Expect = 3.980e-153
Identity = 269/420 (64.05%), Postives = 318/420 (75.71%), Query Frame = 1
Query:    1 IVLAKIKPSLMPPLSEEDRRVALPPVAESLERSTGPRALTSLAAALRGRADPALPRGTILGQFGITLLPLLTFVVFMGTMYYVFTSPAAQVDTTGIQAMGIAG-GDAAQASSDXXXXXXXXXXXXXXXXXXXXXKEAEPAAPAQXXXXAKPAPKVELERTPGPAAAAAERLPAPIGYWIALALGALAVAVFYRIFSFARLEIFKMLLGSFFPLAMLIVAVLGSIVFGLATPSEAAAAGALGGLLLAAAYGRLNLGVVRESAFLTAKTSAMVCWLFVGSSIFSASFALLGGQEIIEHWVLSLGLTPVQFLVLAQVIIFLLGWPLEWTEIIVIFMPIFIPLLPKFGIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVAPRHVTLNQIFAGMMPFMAIQVFAVFLLYQFPAIGMWLPSVLY 1257
            IVLAK+KPSL PP+S E+RRV LP  AE +  +   + L  L  A++G+ + A+P  ++L    I LLP L  V+ MG ++   T+P       G+ AMG A  G   +   D            XXXXXXXXX     A+       AKP+  +  E       AA+ER+PAP  +WIAL   A+A+A+FY IFSFARLEIFKMLLGSFFPLAM+I+AVLG+IVFGLATP+EAAA G++GGL+LAAAY RLNLGV++ES +LTAKTSAMVCWLFVGSSIFSA+FALLGGQEII  WVLS+ +TPVQF++LAQV+IFLLGWPLEWTEIIVIFMPIFIPLLP FGIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGV+P HVTLNQIFAGM+PFMAIQV A+ LLYQFPAIG+WLP +LY
Sbjct:  231 IVLAKLKPSLAPPMSAEERRVPLPAFAEIVSSTISKKVLPGLIGAIKGKRNAAVPMRSLLNHLFIALLPALAVVLIMGFVFLKVTAPVEPEVPEGVVAMGSAALGTVEEEKVDAGGLQEPEAEVGXXXXXXXXXXXXXXASVGAQTEAAKPSAPIVAEPV-----AASERVPAPASFWIALVSCAVALALFYAIFSFARLEIFKMLLGSFFPLAMMILAVLGTIVFGLATPTEAAAMGSMGGLVLAAAYRRLNLGVLKESVYLTAKTSAMVCWLFVGSSIFSAAFALLGGQEIINTWVLSMDMTPVQFMILAQVVIFLLGWPLEWTEIIVIFMPIFIPLLPHFGIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVSPPHVTLNQIFAGMLPFMAIQVLAIILLYQFPAIGLWLPQMLY 645          
BLAST of mRNA_P-wetherbeei_contig5773.4.1 vs. uniprot
Match: A0A7V9IPH3_9BURK (TRAP transporter large permease subunit n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A7V9IPH3_9BURK)

HSP 1 Score: 450 bits (1158), Expect = 1.330e-150
Identity = 276/424 (65.09%), Postives = 319/424 (75.24%), Query Frame = 1
Query:    1 IVLAKIKPSLMPPLSEEDRRVALPPVAESLERSTGPRALTSLAAALRGRADPALPRGTILGQFGITLLPLLTFVVFMGTMYYVFTSPAAQVDTTGIQAMGIA---GGDAAQASSDXXXXXXXXXXXXXXXXXXXXXKEAEPAAPAQXXXXAKPAPKVELERTPGPAAAAAERLPAPIGYWIALALGALAVAVFYRIFSFARLEIFKMLLGSFFPLAMLIVAVLGSIVFGLATPSEAAAAGALGGLLLAAAYGRLNLGVVRESAFLTAKTSAMVCWLFVGSSIFSASFALLGGQEIIEHWVLSLGLTPVQFLVLAQVIIFLLGWPLEWTEIIVIFMPIFIPLLPKFGIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVAPRHVTLNQIFAGMMPFMAIQVFAVFLLYQFPAIGMWLPSVLYGR 1263
            I+LAKIKPSLMPPLS+E+RRV LPP A+ L + TG  AL++L    +GR +  +P  T+  Q G+T+LP L  V+ +G +Y   T+P    D  G+Q MG A   G  A Q+S          XXXXXXXXXXXXX          XXXX                          + +WIALA+    +A+FY  F+F RLE+FKMLLGSFFPLA+LI+AVLGSIVFGLATPSEAAAAGALGGLLLAAAYGRLN  VVR+SAFLTAKTSAMVCWLFVG+SIFSASFALLGGQEIIE WV SLGLTP++FL+L+QVIIF+LGWPLEWTEIIVIFMPIF+PLLP++G+DPLFFGLLVALNLQTAFLSPPVAMAAFYLKGV+P HVTLNQIFAGM+PFM IQV A+F LY FP IG+WLPSVLYGR
Sbjct:  231 IILAKIKPSLMPPLSQEERRVDLPPFAQQLSK-TGAGALSALVRGFKGRGNAGVPARTMAFQLGVTVLPALMIVLILGLVYRTVTAPPTVQDIGGLQEMGSASDAGSSAYQSSGGLAEPPPVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------XLAFWIALAVCVALLAIFYAKFTFERLEVFKMLLGSFFPLAVLIIAVLGSIVFGLATPSEAAAAGALGGLLLAAAYGRLNYAVVRDSAFLTAKTSAMVCWLFVGASIFSASFALLGGQEIIEKWVTSLGLTPIEFLLLSQVIIFILGWPLEWTEIIVIFMPIFVPLLPQYGVDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVSPPHVTLNQIFAGMLPFMGIQVIAIFALYVFPQIGLWLPSVLYGR 643          
BLAST of mRNA_P-wetherbeei_contig5773.4.1 vs. uniprot
Match: UPI00124EF3B3 (TRAP transporter large permease subunit n=2 Tax=Noviherbaspirillum TaxID=1344552 RepID=UPI00124EF3B3)

HSP 1 Score: 447 bits (1151), Expect = 2.940e-149
Identity = 278/434 (64.06%), Postives = 319/434 (73.50%), Query Frame = 1
Query:    1 IVLAKIKPSLMPPLSEEDRRVALPPVAESLERSTGPRALTSLAAALRGRADPALPRGTILGQFGITLLPLLTFVVFMGTMYYVFTSPAAQVDTTGIQAMGIAGGDAAQASSDXXXXXXXXXXXXXXXXXXXXX--------KEAEPAAPA----QXXXXAKPAPKVELERTP--GPAAAAAER-LPAPIGYWIALALGALAVAVFYRIFSFARLEIFKMLLGSFFPLAMLIVAVLGSIVFGLATPSEAAAAGALGGLLLAAAYGRLNLGVVRESAFLTAKTSAMVCWLFVGSSIFSASFALLGGQEIIEHWVLSLGLTPVQFLVLAQVIIFLLGWPLEWTEIIVIFMPIFIPLLPKFGIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVAPRHVTLNQIFAGMMPFMAIQVFAVFLLYQFPAIGMWLPSVLY 1257
            I++AKIKP   PPL E+DR V LP    ++ R+    A  SL  AL+GR++ A+P   IL Q  + LLP L F   MG  Y   T   A  DT  I+      G   +A SD       XXXXXXXXXXXXXX         +A+P+A A         AK A       TP   PA AA E  + AP GYWIA A+G  A+A+FY + SFARLEIFKMLLGSFFPLA+LI+AVLG+IVFGLATP+EAAA G++GGLLLAAAY RLN GV+RES +LTAKTSAMVCWLFVGSSIFSA+FALLGGQEII +WVLS+ LTP+QF++LAQV+IFLLGWPLEWTEIIVIFMPIFIPLLP F IDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGV+P HVTLNQIF GM+PFMAIQVFA+ LLY FPAIG+WLP +LY
Sbjct:  231 IIIAKIKPHWAPPLPEQDRMVPLPSYVPAIGRTGRSNAFGSLITALKGRSNAAVPMRVILSQLFVALLPALAFAAIMGFAYQTVTQQKAAADTELIEMGTGFNGGGTEAGSDSGLAEPPXXXXXXXXXXXXXXXXXXXXXESKAQPSASAGTGASDAQAAKEAAPAASATTPPASPAQAAEEEGVKAPSGYWIAFAIGLAALAIFYAVLSFARLEIFKMLLGSFFPLALLILAVLGAIVFGLATPTEAAAMGSMGGLLLAAAYRRLNFGVLRESVYLTAKTSAMVCWLFVGSSIFSAAFALLGGQEIINNWVLSMDLTPIQFMILAQVVIFLLGWPLEWTEIIVIFMPIFIPLLPHFNIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVSPPHVTLNQIFLGMLPFMAIQVFALILLYTFPAIGLWLPELLY 664          
BLAST of mRNA_P-wetherbeei_contig5773.4.1 vs. uniprot
Match: A0A0P0MAP9_9BURK (Sialic acid TRAP transporter permease protein SiaT n=13 Tax=Comamonadaceae TaxID=80864 RepID=A0A0P0MAP9_9BURK)

HSP 1 Score: 444 bits (1142), Expect = 4.640e-148
Identity = 258/428 (60.28%), Postives = 302/428 (70.56%), Query Frame = 1
Query:    1 IVLAKIKPSLMPPLSEEDRRVALPPVAESLERSTGPRALTSLAAALRGRADPALPRGTILGQFGITLLPLLTFVVFMGTMYYVFTSPAAQVDTTGIQAMGIAGGDAAQASSDXXXXXXXXXXXXXXXXXXXXXKEAEPAAPAQXXXXAKPAPKVELERTPGPA---------AAAAERLPAPIGYWIALALGALAVAVFYRIFSFARLEIFKMLLGSFFPLAMLIVAVLGSIVFGLATPSEAAAAGALGGLLLAAAYGRLNLGVVRESAFLTAKTSAMVCWLFVGSSIFSASFALLGGQEIIEHWVLSLGLTPVQFLVLAQVIIFLLGWPLEWTEIIVIFMPIFIPLLPKFGIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVAPRHVTLNQIFAGMMPFMAIQVFAVFLLYQFPAIGMWLPSVLY 1257
            +++AK KP + PP+S EDR V LP  A+ + +      L  L  A++G+ + A+P   +L    I LLPLL     MGT+Y+  T+P       G+ AMG   G+ + +                           E  + A        APK   E TP            +AAAER  AP+ +WI LA  A+A+A+FY  FSFARLEIFKMLLGSFFPLA++I+AVLG+IVFGLATP+EAAA G+LGGLLLAAAY RLN  V+RES +LTAKTSAMVCWLFVGSSIFSA+FALLGGQEII  WVL + LTPVQF++LAQV+IFLLGWPLEWTEIIVIFMPIFIPLLP FGIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGV+P HVTLNQIFAGM+PFMAIQVFA+ LLY FPAIGMWLP VLY
Sbjct:  231 VIIAKWKPHMAPPMSAEDRIVPLPAFAQVVSKDISNTVLPGLIGAIKGKRNAAVPMRELLNHLVIALLPLLAVAAIMGTIYFKVTAPLPVETVEGVVAMG---GELSDSVETAEEGESISGLSEPEADGLQLPPGTEAVSAASEAVSTAQAPK---EATPXXXXXXXXXXXXSAAAERQDAPLSFWIGLASCAVALAIFYAYFSFARLEIFKMLLGSFFPLALMILAVLGTIVFGLATPTEAAAMGSLGGLLLAAAYRRLNYVVLRESVYLTAKTSAMVCWLFVGSSIFSAAFALLGGQEIINSWVLGMDLTPVQFMILAQVVIFLLGWPLEWTEIIVIFMPIFIPLLPHFGIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVSPPHVTLNQIFAGMLPFMAIQVFAIVLLYMFPAIGMWLPEVLY 652          
BLAST of mRNA_P-wetherbeei_contig5773.4.1 vs. uniprot
Match: A0A1Q8YG38_9BURK (DctM-like transporters family protein n=1 Tax=Rhodoferax antarcticus ANT.BR TaxID=1111071 RepID=A0A1Q8YG38_9BURK)

HSP 1 Score: 445 bits (1144), Expect = 5.550e-148
Identity = 270/451 (59.87%), Postives = 322/451 (71.40%), Query Frame = 1
Query:    1 IVLAKIKPSLMPPLSEEDRRVALPPVAESLERSTGPRALTSLAAALRGRADPALPRGTILGQFGITLLPLLTFVVFMGTMYYVFTSPAAQVDTTGIQAMGIAGGDAAQASS-------------------------------DXXXXXXXXXXXXXXXXXXXXXKEAEPAAPAQXXXXAKPAPKVELERTPGPA-AAAAERLPAPIGYWIALALGALAVAVFYRIFSFARLEIFKMLLGSFFPLAMLIVAVLGSIVFGLATPSEAAAAGALGGLLLAAAYGRLNLGVVRESAFLTAKTSAMVCWLFVGSSIFSASFALLGGQEIIEHWVLSLGLTPVQFLVLAQVIIFLLGWPLEWTEIIVIFMPIFIPLLPKFGIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVAPRHVTLNQIFAGMMPFMAIQVFAVFLLYQFPAIGMWLPSVLY 1257
            ++LAK+KP + PP+S E+R V LPP+A ++  S   +AL+ L  AL+G+ +  +P GT+LGQ GITLLP L     +G  Y   T+P    +T G+QAMG    D+A+ SS                                XXXXXXXXXXXXXX       K A P+APA        A              A AER P P  YW+A+ +    +A+FY  FSFA+LEIFKMLLGSFFPLA++I+AVLG+IVFGLATP+EAAA G++GGLLLAAAY RLN+ V+RES +LTAKTSAMVCWLFVGSSIFSA+FALLGGQ+++  WVLS+ LTPVQF+++AQVIIFLLGWPLEWTEIIVIFMPIFIPLLP FGIDPLFFGLLVALNLQTAFLSPPVAM+AFYLKGV+P HVTLNQIFAGM+PFM IQV A+ LLY FPAIG+WLP VLY
Sbjct:  231 VILAKLKPKMAPPMSAEERYVPLPPLATAITESGTSKALSGLLGALKGKCNAHVPMGTLLGQLGITLLPALVVAGALGLAYMQLTAPLPVDETEGVQAMGFGSFDSAEDSSAGDGGLAEPEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAADDAVKTAAPSAPATTVMATPTAQSAAXXXXXXXXPVAVAERQPTPNSYWVAVVICVAGLALFYAFFSFAQLEIFKMLLGSFFPLAVMIMAVLGTIVFGLATPTEAAAMGSMGGLLLAAAYRRLNMTVMRESVYLTAKTSAMVCWLFVGSSIFSAAFALLGGQDLVNTWVLSMDLTPVQFMIMAQVIIFLLGWPLEWTEIIVIFMPIFIPLLPHFGIDPLFFGLLVALNLQTAFLSPPVAMSAFYLKGVSPPHVTLNQIFAGMLPFMGIQVVAIVLLYLFPAIGLWLPQVLY 681          
BLAST of mRNA_P-wetherbeei_contig5773.4.1 vs. uniprot
Match: A0A1G0D718_9PROT (C4-dicarboxylate ABC transporter n=1 Tax=Gallionellales bacterium RBG_16_56_9 TaxID=1798249 RepID=A0A1G0D718_9PROT)

HSP 1 Score: 443 bits (1139), Expect = 9.130e-148
Identity = 253/423 (59.81%), Postives = 306/423 (72.34%), Query Frame = 1
Query:    1 IVLAKIKPSLMPPLSEEDRRVALPPVAESLERSTGPRALTSLAAALRGRADPALPRGTILGQFGITLLPLLTFVVFMGTMYYVFTSPAAQVDTTGIQAMGIAGGDAAQASSDXXXXXXXXXXXXXXXXXXXXXKEAEPAAPAQXXXXAKPAPKVELERTPGPAAAAA----ERLPAPIGYWIALALGALAVAVFYRIFSFARLEIFKMLLGSFFPLAMLIVAVLGSIVFGLATPSEAAAAGALGGLLLAAAYGRLNLGVVRESAFLTAKTSAMVCWLFVGSSIFSASFALLGGQEIIEHWVLSLGLTPVQFLVLAQVIIFLLGWPLEWTEIIVIFMPIFIPLLPKFGIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVAPRHVTLNQIFAGMMPFMAIQVFAVFLLYQFPAIGMWLPSVLY 1257
            IV+AK+KP+  PPLS E+RRV LP  AE ++ +   R L  L  A++G+ + A+P  T+L Q    LLP L F   M   Y + T P+ ++  +G+  MG AG  A  AS+D                       AEPAA       A  AP    +        AA    ERL APIGYWIA A+G   + +FY IF+FARLEIFKMLL SFFPLA++I+AVLGSIVFGLATP+EAAA G+LGGLLLA AY RLN+ +++ES +L AKTSAMVCWLFVGSSIFSA+FALLGGQE+I +WVLS+ LTPV+F+++AQ++IFLLGWPLEWTEIIVIFMPIF+PLL  + IDPLFFGLLVA+NLQTAFLSPPVAM+AFYLKGVAP HVTLNQIFAGM+PFM IQ+FA+ LLY FPAIGMWLPS+LY
Sbjct:  231 IVVAKLKPNSAPPLSAEERRVTLPEFAELIKNTVSNRVLPGLIGAIKGQRNVAVPLQTLLSQLFTALLPALAFAGVMAISYQMVTQPSQEL-ASGLVEMGFAGEAAESASTDGGSQDAEALGGL-----------AEPAAEELSPPSAVEAPSAVGQGATADQVTAAPDAKERLNAPIGYWIAFAIGLAGLVIFYAIFTFARLEIFKMLLSSFFPLAIMILAVLGSIVFGLATPAEAAAMGSLGGLLLALAYRRLNVPMLKESVYLAAKTSAMVCWLFVGSSIFSAAFALLGGQELINNWVLSMNLTPVEFMIMAQIVIFLLGWPLEWTEIIVIFMPIFLPLLAHYQIDPLFFGLLVAMNLQTAFLSPPVAMSAFYLKGVAPSHVTLNQIFAGMLPFMGIQIFAIVLLYLFPAIGMWLPSILY 641          
BLAST of mRNA_P-wetherbeei_contig5773.4.1 vs. uniprot
Match: A0A1W9KRF3_9BURK (C4-dicarboxylate ABC transporter n=1 Tax=Rhodoferax ferrireducens TaxID=192843 RepID=A0A1W9KRF3_9BURK)

HSP 1 Score: 444 bits (1142), Expect = 9.570e-148
Identity = 273/446 (61.21%), Postives = 320/446 (71.75%), Query Frame = 1
Query:    1 IVLAKIKPSLMPPLSEEDRRVALPPVAESLERSTGPRALTSLAAALRGRADPALPRGTILGQFGITLLPLLTFVVFMGTMYYVFTSPAAQVDTTGIQAMGIAGGDAAQASSDXXXXXXXXXXXXXXXXXXXXXKEAEPAAPAQXXXXAKPAPKVELERTPGPAAAA---------------------------AERLPAPIGYWIALALGALAVAVFYRIFSFARLEIFKMLLGSFFPLAMLIVAVLGSIVFGLATPSEAAAAGALGGLLLAAAYGRLNLGVVRESAFLTAKTSAMVCWLFVGSSIFSASFALLGGQEIIEHWVLSLGLTPVQFLVLAQVIIFLLGWPLEWTEIIVIFMPIFIPLLPKFGIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVAPRHVTLNQIFAGMMPFMAIQVFAVFLLYQFPAIGMWLPSVLY 1257
            I++AK+KPS+ PP+S E+R V LPP A ++  S   +AL+ L  A++G+ +  +P GT+LGQ GI LLP L     +G  Y   T+P   V+  G+QAMG    DA   +           XXXXXXXXXXXX          XXXX              P AAA                           AERLPAP G+WIA+A+   A+A+FY  FSFARLEIFKMLLGSFFPLA++I+AVLG+IVFG+ATP+EAAA G++GGLLLAAAY RLN+ VVRES +LTAKTSAMVCWLFVGSSIFSA+FALLGGQE++  WVLS+ LTPVQF++LAQV+IFLLGWPLEWTEIIVIFMPIFIPLLP FGIDPLFFGLLVALNLQTAFLSPPVAM+AFYLKGV+P HVTLNQIFAGM+PFM IQV A+ LLY FPAIGMWLP VLY
Sbjct:  231 IIVAKLKPSMAPPMSAEERLVPLPPFAANITESGSSKALSGLIGAIKGKCNAQVPMGTLLGQLGIALLPALVVAGALGLAYVKVTAPLPPVEMEGVQAMGGDSFDAGTDTGAAGGLAEPEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVAPDAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXAERLPAPNGFWIAVAICVAALALFYAYFSFARLEIFKMLLGSFFPLAVMIMAVLGTIVFGVATPTEAAAMGSMGGLLLAAAYRRLNITVVRESVYLTAKTSAMVCWLFVGSSIFSAAFALLGGQELVNTWVLSMDLTPVQFMILAQVVIFLLGWPLEWTEIIVIFMPIFIPLLPHFGIDPLFFGLLVALNLQTAFLSPPVAMSAFYLKGVSPPHVTLNQIFAGMLPFMGIQVIAIVLLYMFPAIGMWLPDVLY 676          
BLAST of mRNA_P-wetherbeei_contig5773.4.1 vs. uniprot
Match: A0A6L4YHQ7_9RHOO (TRAP-type C4-dicarboxylate transport system large permease component n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A6L4YHQ7_9RHOO)

HSP 1 Score: 443 bits (1139), Expect = 1.310e-147
Identity = 273/422 (64.69%), Postives = 307/422 (72.75%), Query Frame = 1
Query:    1 IVLAKIKPSLMPPLSEEDRRVALPPVAESLERSTGPRALTSLAAALRGRADPALPRGTILGQFGITLLPLLTFVVFMGTMYYVFTSPAAQVDTTGIQ-AMGIAGGDAAQASSDXXXXXXXXXXXXXXXXXXXXXKEAEPAAPAQXXXXAKPAPKVELERTPGPAAAAA--ERLPAPIGYWIALALGALAVAVFYRIFSFARLEIFKMLLGSFFPLAMLIVAVLGSIVFGLATPSEAAAAGALGGLLLAAAYGRLNLGVVRESAFLTAKTSAMVCWLFVGSSIFSASFALLGGQEIIEHWVLSLGLTPVQFLVLAQVIIFLLGWPLEWTEIIVIFMPIFIPLLPKFGIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVAPRHVTLNQIFAGMMPFMAIQVFAVFLLYQFPAIGMWLPSVLY 1257
            +++AK+KPSL PPLSEED+ V LP  AE + R+     +  L  A++G  +P  PR  +  Q  I LLP L F   MG  Y + T+P   V    ++   G AG +A     D       XXXXXXXXXXXXXX          XXXX                      ERLPAP+GYWI   +G  ++  FY IF+FARLEIFKMLLGSFFPLAMLI+AVLG+IVFGLATP+EAAA G++GGLLLAAAYGRLN+GVVRES FLTAKTSAMVCWLFVGSSIFSA+FALLGGQE+I  WVLSL +TP QF+VLAQVIIFLLGWPLEWTEIIVIFMPIFIPLLP F IDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGV+P HVTLNQIF GMMPFM IQV A+ LLYQFP IGMWLP VLY
Sbjct:  231 VIVAKLKPSLAPPLSEEDQIVVLPKYAEDISRTFSSNVIKGLIVAIKGNLNPDAPRRVLAKQLFIALLPALVFTAAMGWTYRLVTTPPPAVSADVVEMGTGFAGEEATSEGGDLKEPEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERLPAPLGYWITFGIGIASLVAFYAIFTFARLEIFKMLLGSFFPLAMLILAVLGTIVFGLATPTEAAAMGSMGGLLLAAAYGRLNIGVVRESVFLTAKTSAMVCWLFVGSSIFSAAFALLGGQEVINQWVLSLDMTPTQFMVLAQVIIFLLGWPLEWTEIIVIFMPIFIPLLPHFNIDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVSPPHVTLNQIFLGMMPFMVIQVIALILLYQFPGIGMWLPEVLY 652          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5773.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A838JMH5_9BURK5.240e-17368.60TRAP transporter large permease subunit n=1 Tax=Bu... [more]
A0A259KIM0_9BURK5.470e-15461.67C4-dicarboxylate ABC transporter n=3 Tax=Burkholde... [more]
A0A6L9KLY5_9BURK3.980e-15364.05TRAP transporter large permease subunit n=2 Tax=Rh... [more]
A0A7V9IPH3_9BURK1.330e-15065.09TRAP transporter large permease subunit n=1 Tax=Bu... [more]
UPI00124EF3B32.940e-14964.06TRAP transporter large permease subunit n=2 Tax=No... [more]
A0A0P0MAP9_9BURK4.640e-14860.28Sialic acid TRAP transporter permease protein SiaT... [more]
A0A1Q8YG38_9BURK5.550e-14859.87DctM-like transporters family protein n=1 Tax=Rhod... [more]
A0A1G0D718_9PROT9.130e-14859.81C4-dicarboxylate ABC transporter n=1 Tax=Gallionel... [more]
A0A1W9KRF3_9BURK9.570e-14861.21C4-dicarboxylate ABC transporter n=1 Tax=Rhodofera... [more]
A0A6L4YHQ7_9RHOO1.310e-14764.69TRAP-type C4-dicarboxylate transport system large ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5773contigP-wetherbeei_contig5773:2446..3711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1095769.CAHF01000018_gene821
PFAMsDctM
Model size1266
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categorysignal anchor
Exons1
Evalue2.12e-135
EggNOG OGsCOG4664@1|root,COG4665@1|root,COG4664@2|Bacteria,COG4665@2|Bacteria,1R4MZ@1224|Proteobacteria,2VJ2Q@28216|Betaproteobacteria,47290@75682|Oxalobacteraceae
DescriptionTripartite ATP-independent periplasmic transporter, DctM component
Cds size1236
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186855.8244343-CDS-P-wetherbeei_contig5773:2445..36811683186855.8244343-CDS-P-wetherbeei_contig5773:2445..3681Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5773 2446..3681 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186855.8359282-UTR-P-wetherbeei_contig5773:3681..37111683186855.8359282-UTR-P-wetherbeei_contig5773:3681..3711Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5773 3682..3711 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5773.4.1prot_P-wetherbeei_contig5773.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5773 2446..3681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5773.4.1

>prot_P-wetherbeei_contig5773.4.1 ID=prot_P-wetherbeei_contig5773.4.1|Name=mRNA_P-wetherbeei_contig5773.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=412bp
MPPLSEEDRRVALPPVAESLERSTGPRALTSLAAALRGRADPALPRGTIL
GQFGITLLPLLTFVVFMGTMYYVFTSPAAQVDTTGIQAMGIAGGDAAQAS
SDSGGLAEPEAEPENGLKEPPAEKEAEPAAPAQAEPAAKPAPKVELERTP
GPAAAAAERLPAPIGYWIALALGALAVAVFYRIFSFARLEIFKMLLGSFF
PLAMLIVAVLGSIVFGLATPSEAAAAGALGGLLLAAAYGRLNLGVVRESA
FLTAKTSAMVCWLFVGSSIFSASFALLGGQEIIEHWVLSLGLTPVQFLVL
AQVIIFLLGWPLEWTEIIVIFMPIFIPLLPKFGIDPLFFGLLVALNLQTA
FLSPPVAMAAFYLKGVAPRHVTLNQIFAGMMPFMAIQVFAVFLLYQFPAI
GMWLPSVLYGR*
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mRNA from alignment at P-wetherbeei_contig5773:2446..3711-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5773.4.1 ID=mRNA_P-wetherbeei_contig5773.4.1|Name=mRNA_P-wetherbeei_contig5773.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1266bp|location=Sequence derived from alignment at P-wetherbeei_contig5773:2446..3711- (Phaeothamnion wetherbeei SAG_119_79)
ATCGTGCTCGCGAAGATCAAGCCTTCGTTGATGCCGCCGCTGTCCGAGGA AGACCGCAGGGTTGCGCTTCCGCCGGTCGCCGAGTCGCTTGAGCGCAGCA CCGGCCCGCGTGCGCTCACCTCCCTCGCCGCGGCGCTGCGCGGCCGTGCG GATCCCGCCCTGCCTAGGGGAACGATCCTCGGTCAGTTCGGCATCACGCT CCTGCCCCTGCTGACCTTCGTTGTATTCATGGGCACCATGTACTACGTGT TCACGAGCCCCGCGGCGCAGGTCGACACCACGGGGATCCAGGCCATGGGC ATAGCCGGAGGCGATGCCGCCCAGGCCTCGTCCGACAGCGGCGGCCTGGC CGAACCGGAAGCCGAGCCCGAGAATGGCCTCAAGGAGCCACCCGCAGAGA AGGAGGCTGAACCGGCAGCCCCGGCGCAGGCGGAGCCGGCCGCGAAGCCG GCACCGAAGGTCGAGCTCGAGCGTACGCCCGGGCCTGCGGCGGCTGCGGC CGAGCGCCTGCCCGCGCCGATCGGATACTGGATTGCGCTCGCCCTGGGCG CGCTCGCGGTCGCTGTGTTCTACCGGATCTTCAGTTTCGCGCGTCTCGAG ATCTTCAAGATGCTGCTGGGGTCGTTCTTCCCCCTGGCGATGCTGATCGT GGCGGTGCTTGGCTCGATCGTGTTCGGGTTGGCGACGCCTTCGGAGGCGG CGGCGGCTGGCGCGCTCGGCGGGTTGCTGCTCGCAGCCGCCTACGGACGC CTGAATCTCGGTGTCGTGCGCGAATCCGCGTTCCTGACCGCCAAGACTTC CGCGATGGTGTGCTGGCTGTTCGTGGGGTCGAGCATCTTTTCCGCCTCTT TCGCGCTGCTCGGCGGCCAGGAGATCATCGAGCACTGGGTGCTTTCCCTT GGCCTCACGCCCGTGCAGTTCCTTGTGCTCGCGCAGGTGATTATCTTCCT GCTCGGCTGGCCCTTGGAGTGGACGGAGATCATCGTCATCTTCATGCCGA TCTTCATCCCGCTGCTGCCCAAGTTCGGCATCGATCCGTTGTTCTTCGGC CTGCTGGTCGCGCTGAACCTGCAGACCGCGTTCCTGTCGCCGCCGGTGGC GATGGCTGCGTTCTACCTGAAGGGTGTCGCGCCGCGGCACGTGACGCTGA ACCAGATTTTTGCGGGCATGATGCCGTTCATGGCGATCCAGGTGTTCGCC GTATTCCTGCTGTACCAGTTCCCCGCCATCGGCATGTGGCTGCCTAGCGT GCTGTACGGGAGGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5773:2446..3711-

>mRNA_P-wetherbeei_contig5773.4.1 ID=mRNA_P-wetherbeei_contig5773.4.1|Name=mRNA_P-wetherbeei_contig5773.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1236bp|location=Sequence derived from alignment at P-wetherbeei_contig5773:2446..3711- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCCGCTGTCCGAGGAAGACCGCAGGGTTGCGCTTCCGCCGGTCGC
CGAGTCGCTTGAGCGCAGCACCGGCCCGCGTGCGCTCACCTCCCTCGCCG
CGGCGCTGCGCGGCCGTGCGGATCCCGCCCTGCCTAGGGGAACGATCCTC
GGTCAGTTCGGCATCACGCTCCTGCCCCTGCTGACCTTCGTTGTATTCAT
GGGCACCATGTACTACGTGTTCACGAGCCCCGCGGCGCAGGTCGACACCA
CGGGGATCCAGGCCATGGGCATAGCCGGAGGCGATGCCGCCCAGGCCTCG
TCCGACAGCGGCGGCCTGGCCGAACCGGAAGCCGAGCCCGAGAATGGCCT
CAAGGAGCCACCCGCAGAGAAGGAGGCTGAACCGGCAGCCCCGGCGCAGG
CGGAGCCGGCCGCGAAGCCGGCACCGAAGGTCGAGCTCGAGCGTACGCCC
GGGCCTGCGGCGGCTGCGGCCGAGCGCCTGCCCGCGCCGATCGGATACTG
GATTGCGCTCGCCCTGGGCGCGCTCGCGGTCGCTGTGTTCTACCGGATCT
TCAGTTTCGCGCGTCTCGAGATCTTCAAGATGCTGCTGGGGTCGTTCTTC
CCCCTGGCGATGCTGATCGTGGCGGTGCTTGGCTCGATCGTGTTCGGGTT
GGCGACGCCTTCGGAGGCGGCGGCGGCTGGCGCGCTCGGCGGGTTGCTGC
TCGCAGCCGCCTACGGACGCCTGAATCTCGGTGTCGTGCGCGAATCCGCG
TTCCTGACCGCCAAGACTTCCGCGATGGTGTGCTGGCTGTTCGTGGGGTC
GAGCATCTTTTCCGCCTCTTTCGCGCTGCTCGGCGGCCAGGAGATCATCG
AGCACTGGGTGCTTTCCCTTGGCCTCACGCCCGTGCAGTTCCTTGTGCTC
GCGCAGGTGATTATCTTCCTGCTCGGCTGGCCCTTGGAGTGGACGGAGAT
CATCGTCATCTTCATGCCGATCTTCATCCCGCTGCTGCCCAAGTTCGGCA
TCGATCCGTTGTTCTTCGGCCTGCTGGTCGCGCTGAACCTGCAGACCGCG
TTCCTGTCGCCGCCGGTGGCGATGGCTGCGTTCTACCTGAAGGGTGTCGC
GCCGCGGCACGTGACGCTGAACCAGATTTTTGCGGGCATGATGCCGTTCA
TGGCGATCCAGGTGTTCGCCGTATTCCTGCTGTACCAGTTCCCCGCCATC
GGCATGTGGCTGCCTAGCGTGCTGTACGGGAGGTAG
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