mRNA_P-wetherbeei_contig5770.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5770.2.1
Unique NamemRNA_P-wetherbeei_contig5770.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5770.2.1 vs. uniprot
Match: A0A835Z0N4_9STRA (Fatty acid hydroxylase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0N4_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.350e-14
Identity = 37/76 (48.68%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:    4 ATFTLTSASTWRAWHWVAWAAVVVAGLEIWTELVHVLGAITRARRIAVRGKHLDRLEAKDLAFLTFNKLATAVFSY 231
            A F L     W  WH   W  V++AGLE+ + L   LG  + A+ I  RGKHLDRLEA D+AF+ FNKL T +F+Y
Sbjct:   17 AAFVLQGERQWEPWHIALWIVVLLAGLELLSVLTFALGRASGAKLIPHRGKHLDRLEATDVAFIAFNKLCTTLFTY 92
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BLAST of mRNA_P-wetherbeei_contig5770.2.1 vs. uniprot
Match: A0A7S0GVS8_9EUKA (Hypothetical protein n=2 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GVS8_9EUKA)

HSP 1 Score: 58.9 bits (141), Expect = 1.800e-8
Identity = 28/76 (36.84%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:   10 FTLTSASTWRAWHWVAWAAVVVAGLEIWTELVHVLGAITRARRIAVRGKHLDRLEAKDLAFLTFNKLATAVFSYHL 237
            F +    TW+ WH+  ++ V+  G+EI + +V ++    +   I +RGKHLD  E  D  ++  NK+ATAVF YH+
Sbjct:   25 FVIHQPGTWQVWHFGVFSVVIYLGMEILSHIVPLVFQ-NKTNLIPMRGKHLDVFETVDHVYININKIATAVFVYHM 99
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BLAST of mRNA_P-wetherbeei_contig5770.2.1 vs. uniprot
Match: A0A7S2RK20_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RK20_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.250e-6
Identity = 29/75 (38.67%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:   10 FTLTSASTWRAWHWVAWAAVVVAGLEIWTELVHVLGAITRARRIAVRGKHLDRLEAKDLAFLTFNKLATAVFSYH 234
            + +  ASTW AWH++A+ AV++AG+EI T LV ++    R+ +I    +    L+  D   + FN++ATA F YH
Sbjct:   22 YMVNDASTWSAWHYLAFCAVIIAGMEILTILVPMVFE-GRSGKIVTSAQPYATLQWDDKFCIGFNRVATAFFVYH 95
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BLAST of mRNA_P-wetherbeei_contig5770.2.1 vs. uniprot
Match: A0A8J5X8X9_DIALT (Fatty acid hydroxylase domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X8X9_DIALT)

HSP 1 Score: 50.8 bits (120), Expect = 1.560e-5
Identity = 27/70 (38.57%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:   34 WRAWHW---VAWAAVVVAGLEIWTELVHVLGAITRARRIAVRGKHLDRLEAKDLAFLTFNKLATAVFSYH 234
            W  W W   + +AAVV+ G ++   +V +L +      + V+GKHLD L+AKD AF+ FN+L    F Y+
Sbjct:   39 WTTWSWTQRIVFAAVVLLGYDVLHRVVPLLFSFRP--NLPVKGKHLDVLDAKDWAFIAFNRLTGVTFVYN 106
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5770.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835Z0N4_9STRA2.350e-1448.68Fatty acid hydroxylase domain-containing protein n... [more]
A0A7S0GVS8_9EUKA1.800e-836.84Hypothetical protein n=2 Tax=Amorphochlora amoebif... [more]
A0A7S2RK20_9STRA2.250e-638.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J5X8X9_DIALT1.560e-538.57Fatty acid hydroxylase domain-containing protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5770contigP-wetherbeei_contig5770:1039..1435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G2Q4
PFAMsFA_hydroxylase
Model size237
Max annot lvl2759|Eukaryota
KEGG rclassRC00904
KEGG koko:K00227
KEGG ReactionR07215,R07486,R07491,R07505
KEGG Pathwayko00100,ko01100,ko01110,ko01130,map00100,map01100,map01110,map01130
KEGG ModuleM00101,M00102
Hectar predicted targeting categorysignal peptide
Exons2
Evalue3.22e-15
EggNOG OGsCOG3000@1|root,KOG0872@2759|Eukaryota
Ec32 ortholog descriptionFatty acid hydroxylase
Ec32 orthologEc-11_003100.1
EC1.14.19.20
DescriptionC-5 sterol desaturase activity
Cds size237
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186855.5176055-CDS-P-wetherbeei_contig5770:1038..11771683186855.5176055-CDS-P-wetherbeei_contig5770:1038..1177Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5770 1039..1177 +
1683186855.5272658-CDS-P-wetherbeei_contig5770:1337..14351683186855.5272658-CDS-P-wetherbeei_contig5770:1337..1435Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5770 1338..1435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5770.2.1prot_P-wetherbeei_contig5770.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5770 1039..1435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5770.2.1

>prot_P-wetherbeei_contig5770.2.1 ID=prot_P-wetherbeei_contig5770.2.1|Name=mRNA_P-wetherbeei_contig5770.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
GATFTLTSASTWRAWHWVAWAAVVVAGLEIWTELVHVLGAITRARRIAVR
GKHLDRLEAKDLAFLTFNKLATAVFSYHL
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mRNA from alignment at P-wetherbeei_contig5770:1039..1435+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5770.2.1 ID=mRNA_P-wetherbeei_contig5770.2.1|Name=mRNA_P-wetherbeei_contig5770.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=397bp|location=Sequence derived from alignment at P-wetherbeei_contig5770:1039..1435+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGCCACGTTCACCCTCACGAGCGCGTCGACCTGGCGCGCTTGGCACTG
GGTTGCGTGGGCCGCCGTCGTCGTCGCTGGACTGGAGATCTGGACGGAGC
TCGTGCATGTCCTTGGCGCCATCACGCGGGCCCGGCGTAGTAAGTGCAAC
GGTCTCACATCACGAAAATGGGGTTCCTAATTCGAGAATGGCCCCCTTTA
CAACGTTAAAGTCTCTCCCTTCTCTCAAAGTTGCACCACTATCGCAACCT
TTGGACGTTTCTCTATTTCCCGCTTGCAAATTGCAACTCGCAAAAACAGT
CGCGGTGCGAGGCAAGCATCTGGACCGGCTCGAAGCGAAGGACCTCGCGT
TCCTCACCTTCAACAAGCTGGCGACGGCCGTTTTTTCGTACCACCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5770:1039..1435+

>mRNA_P-wetherbeei_contig5770.2.1 ID=mRNA_P-wetherbeei_contig5770.2.1|Name=mRNA_P-wetherbeei_contig5770.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig5770:1039..1435+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGCCACGTTCACCCTCACGAGCGCGTCGACCTGGCGCGCTTGGCACTG
GGTTGCGTGGGCCGCCGTCGTCGTCGCTGGACTGGAGATCTGGACGGAGC
TCGTGCATGTCCTTGGCGCCATCACGCGGGCCCGGCGTATCGCGGTGCGA
GGCAAGCATCTGGACCGGCTCGAAGCGAAGGACCTCGCGTTCCTCACCTT
CAACAAGCTGGCGACGGCCGTTTTTTCGTACCACCTC
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