mRNA_P-wetherbeei_contig57667.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57667.1.1
Unique NamemRNA_P-wetherbeei_contig57667.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57667.1.1 vs. uniprot
Match: A0A6J4UVB9_9CHLR (DNA-directed DNA polymerase n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4UVB9_9CHLR)

HSP 1 Score: 107 bits (266), Expect = 3.220e-25
Identity = 53/78 (67.95%), Postives = 60/78 (76.92%), Query Frame = 1
Query:    1 GERVEIYERQDGSFGFIEDYARDENTRTLLRKLHDTAIRFEDAFSSKAEFDAFFPLITPRTRLEAAREAEVVEQLGLF 234
            G+RVEIYERQDG+ GF EDY RDEN + LLR L DTA+RFE  F S++EFDAFFP I PRT L  AREA+ VEQL L 
Sbjct:  676 GDRVEIYERQDGALGFAEDYDRDENVQVLLRHLRDTAMRFEPIFDSRSEFDAFFPPIQPRTDLAIAREAKPVEQLSLL 753          
BLAST of mRNA_P-wetherbeei_contig57667.1.1 vs. uniprot
Match: A0A7V9HLA7_9CHLR (DNA-directed DNA polymerase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9HLA7_9CHLR)

HSP 1 Score: 101 bits (251), Expect = 3.430e-23
Identity = 50/78 (64.10%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    1 GERVEIYERQDGSFGFIEDYARDENTRTLLRKLHDTAIRFEDAFSSKAEFDAFFPLITPRTRLEAAREAEVVEQLGLF 234
            GER+E YERQDG  GFIE+Y  DEN   LLR+LHD A RF+  FSS A+FDAFFP +T RT LEAAR     EQL LF
Sbjct:  673 GERIETYERQDGELGFIEEYDGDENMSYLLRRLHDVAERFDGLFSSNADFDAFFPALTARTDLEAARGQTAAEQLSLF 750          
BLAST of mRNA_P-wetherbeei_contig57667.1.1 vs. uniprot
Match: A0A7V8VYD0_9CHLR (DNA-directed DNA polymerase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8VYD0_9CHLR)

HSP 1 Score: 98.6 bits (244), Expect = 3.020e-22
Identity = 48/78 (61.54%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 GERVEIYERQDGSFGFIEDYARDENTRTLLRKLHDTAIRFEDAFSSKAEFDAFFPLITPRTRLEAAREAEVVEQLGLF 234
            GER+E+YERQDGS   +E+Y RDEN   LLR L DTA RFE  F S+ EFDAFFP I P T L+ AR    V+QLGLF
Sbjct:  629 GERLEVYERQDGSLALVEEYDRDENRSVLLRHLRDTATRFEQLFDSREEFDAFFPPIKPETDLDFARARRPVQQLGLF 706          
BLAST of mRNA_P-wetherbeei_contig57667.1.1 vs. uniprot
Match: A0A7W0QR55_9CHLR (DNA-directed DNA polymerase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0QR55_9CHLR)

HSP 1 Score: 97.8 bits (242), Expect = 5.640e-22
Identity = 49/78 (62.82%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 GERVEIYERQDGSFGFIEDYARDENTRTLLRKLHDTAIRFEDAFSSKAEFDAFFPLITPRTRLEAAREAEVVEQLGLF 234
            GERV +YER+DGS GF EDY RDENTR LLR L D A RFE  F    EF++FFPLITP T LEAAR  +   Q+ LF
Sbjct:  661 GERVSLYEREDGSLGFSEDYRRDENTRVLLRHLKDAAGRFELLFVDAQEFESFFPLITPSTSLEAARSQQPARQMTLF 738          
BLAST of mRNA_P-wetherbeei_contig57667.1.1 vs. uniprot
Match: A0A7V9VVD7_9CHLR (DNA-directed DNA polymerase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VVD7_9CHLR)

HSP 1 Score: 96.3 bits (238), Expect = 1.960e-21
Identity = 49/78 (62.82%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 GERVEIYERQDGSFGFIEDYARDENTRTLLRKLHDTAIRFEDAFSSKAEFDAFFPLITPRTRLEAAREAEVVEQLGLF 234
            GERV +YER DGS GF EDYA DENT  LLR L D A RFE  F    EF+AFFP I P T LE AR+ +V  QLGLF
Sbjct:  661 GERVLLYERVDGSLGFTEDYAEDENTSVLLRHLKDAAGRFEILFEDTQEFEAFFPTIKPTTSLEIARKTQVTRQLGLF 738          
BLAST of mRNA_P-wetherbeei_contig57667.1.1 vs. uniprot
Match: A0A838GAH6_9CHLR (DNA-directed DNA polymerase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A838GAH6_9CHLR)

HSP 1 Score: 94.4 bits (233), Expect = 9.290e-21
Identity = 47/78 (60.26%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 GERVEIYERQDGSFGFIEDYARDENTRTLLRKLHDTAIRFEDAFSSKAEFDAFFPLITPRTRLEAAREAEVVEQLGLF 234
            GERV +YER+DGS GF EDY  DENT+ LLR L D A RFE  F    EFD+FFPLITP T LE AR  +   Q+ LF
Sbjct:  661 GERVSLYEREDGSLGFSEDYQHDENTKVLLRHLKDVAGRFELLFVDVQEFDSFFPLITPSTSLEVARNQQPARQMTLF 738          
BLAST of mRNA_P-wetherbeei_contig57667.1.1 vs. uniprot
Match: A0A7V9N1Y5_9CHLR (DNA-directed DNA polymerase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9N1Y5_9CHLR)

HSP 1 Score: 89.0 bits (219), Expect = 7.260e-19
Identity = 45/78 (57.69%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    1 GERVEIYERQDGSFGFIEDYARDENTRTLLRKLHDTAIRFEDAFSSKAEFDAFFPLITPRTRLEAAREAEVVEQLGLF 234
            G R+E YERQDG  G  ED+  DENT  LLR+L D A RF   F+S +EFDAFFP I+ RT L AAR  E  +QL LF
Sbjct:  660 GGRLEFYERQDGELGLTEDWDHDENTTYLLRRLRDVAERFRALFTSDSEFDAFFPAISTRTDLVAARSQEAAQQLDLF 737          
BLAST of mRNA_P-wetherbeei_contig57667.1.1 vs. uniprot
Match: A0A6J4VG74_9CHLR (DNA-directed DNA polymerase n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4VG74_9CHLR)

HSP 1 Score: 85.9 bits (211), Expect = 8.780e-18
Identity = 43/78 (55.13%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    1 GERVEIYERQDGSFGFIEDYARDENTRTLLRKLHDTAIRFEDAFSSKAEFDAFFPLITPRTRLEAAREAEVVEQLGLF 234
            G+R+E+YERQDG    I DYARDEN   LLR+L D A RF   F ++  FDAFFP ++ RT L AAR+     QLGLF
Sbjct:  668 GDRLELYERQDGELALIADYARDENADYLLRRLRDVAERFRPLFPTQNGFDAFFPSLSARTDLLAARQQRTSAQLGLF 745          
BLAST of mRNA_P-wetherbeei_contig57667.1.1 vs. uniprot
Match: A0A7W0S9Z8_9CHLR (DNA-directed DNA polymerase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0S9Z8_9CHLR)

HSP 1 Score: 80.1 bits (196), Expect = 9.400e-16
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 GERVEIYERQDGSFGFIEDYARDENTRTLLRKLHDTAIRFEDAFSSKAEFDAFFPLITPRTRLEAAREAEVVEQLGLF 234
            G+R+ +YER+DG     + YA DEN   LL++L++ A RF   F++  EF++FFP I+ RT LEAA +   VEQLGLF
Sbjct:  655 GDRLALYEREDGELNSTDTYAMDENVSYLLKRLYEVAGRFRGLFATDVEFESFFPTISMRTDLEAAHQQTPVEQLGLF 732          
BLAST of mRNA_P-wetherbeei_contig57667.1.1 vs. uniprot
Match: A0A2E3IWM3_9BACT (DNA-directed DNA polymerase n=2 Tax=FCB group TaxID=1783270 RepID=A0A2E3IWM3_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 1.740e-7
Identity = 31/78 (39.74%), Postives = 43/78 (55.13%), Query Frame = 1
Query:    1 GERVEIYERQDGSFGFIEDYARDENTRTLLRKLHDTAIRFEDAFSSKAEFDAFFPLITPRTRLEAAREAEVVEQLGLF 234
            G+R+ +Y+++DGS   +E Y  DE+   LLR+LHD A RF+  F  + +F A F LI              VEQL LF
Sbjct:  642 GDRISVYQKEDGSLSRVEQYEDDEDKNYLLRRLHDMARRFQSLFEDR-QFRALFXLI----------RKPAVEQLSLF 708          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57667.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6J4UVB9_9CHLR3.220e-2567.95DNA-directed DNA polymerase n=1 Tax=uncultured The... [more]
A0A7V9HLA7_9CHLR3.430e-2364.10DNA-directed DNA polymerase n=1 Tax=Chloroflexia b... [more]
A0A7V8VYD0_9CHLR3.020e-2261.54DNA-directed DNA polymerase n=1 Tax=Chloroflexia b... [more]
A0A7W0QR55_9CHLR5.640e-2262.82DNA-directed DNA polymerase n=1 Tax=Chloroflexia b... [more]
A0A7V9VVD7_9CHLR1.960e-2162.82DNA-directed DNA polymerase n=1 Tax=Chloroflexia b... [more]
A0A838GAH6_9CHLR9.290e-2160.26DNA-directed DNA polymerase n=1 Tax=Chloroflexia b... [more]
A0A7V9N1Y5_9CHLR7.260e-1957.69DNA-directed DNA polymerase n=1 Tax=Chloroflexia b... [more]
A0A6J4VG74_9CHLR8.780e-1855.13DNA-directed DNA polymerase n=1 Tax=uncultured The... [more]
A0A7W0S9Z8_9CHLR9.400e-1648.72DNA-directed DNA polymerase n=1 Tax=Chloroflexia b... [more]
A0A2E3IWM3_9BACT1.740e-739.74DNA-directed DNA polymerase n=2 Tax=FCB group TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57667contigP-wetherbeei_contig57667:6..245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog479434.Sthe_0516
PFAMsDNA_pol_B,DNA_pol_B_exo1
Model size240
Max annot lvl200795|Chloroflexi
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.01e-13
EggNOG OGsCOG0417@1|root,COG0417@2|Bacteria,2G7ZM@200795|Chloroflexi
DescriptionSMART DNA-directed DNA polymerase B
Cds size240
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186855.0242846-CDS-P-wetherbeei_contig57667:5..2451683186855.0242846-CDS-P-wetherbeei_contig57667:5..245Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57667 6..245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57667.1.1prot_P-wetherbeei_contig57667.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57667 6..245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57667.1.1

>prot_P-wetherbeei_contig57667.1.1 ID=prot_P-wetherbeei_contig57667.1.1|Name=mRNA_P-wetherbeei_contig57667.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
GERVEIYERQDGSFGFIEDYARDENTRTLLRKLHDTAIRFEDAFSSKAEF
DAFFPLITPRTRLEAAREAEVVEQLGLFD*
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mRNA from alignment at P-wetherbeei_contig57667:6..245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57667.1.1 ID=mRNA_P-wetherbeei_contig57667.1.1|Name=mRNA_P-wetherbeei_contig57667.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig57667:6..245+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGAGCGCGTGGAGATCTACGAACGGCAGGACGGATCGTTCGGGTTCAT CGAGGACTACGCGCGGGACGAGAATACCCGGACGTTGCTGCGGAAGCTGC ACGACACGGCGATCCGCTTCGAGGACGCGTTCTCCTCGAAGGCGGAGTTC GACGCCTTCTTCCCCCTCATCACGCCGCGCACGAGGCTGGAGGCCGCCAG AGAGGCCGAGGTTGTGGAGCAACTCGGCCTGTTCGACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57667:6..245+

>mRNA_P-wetherbeei_contig57667.1.1 ID=mRNA_P-wetherbeei_contig57667.1.1|Name=mRNA_P-wetherbeei_contig57667.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig57667:6..245+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGAGCGCGTGGAGATCTACGAACGGCAGGACGGATCGTTCGGGTTCAT
CGAGGACTACGCGCGGGACGAGAATACCCGGACGTTGCTGCGGAAGCTGC
ACGACACGGCGATCCGCTTCGAGGACGCGTTCTCCTCGAAGGCGGAGTTC
GACGCCTTCTTCCCCCTCATCACGCCGCGCACGAGGCTGGAGGCCGCCAG
AGAGGCCGAGGTTGTGGAGCAACTCGGCCTGTTCGACTGA
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