mRNA_P-wetherbeei_contig57655.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57655.1.1
Unique NamemRNA_P-wetherbeei_contig57655.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57655.1.1 vs. uniprot
Match: A0A6N9R787_9RHOO (LysR family transcriptional regulator n=1 Tax=Aromatoleum sp. TaxID=2307007 RepID=A0A6N9R787_9RHOO)

HSP 1 Score: 198 bits (504), Expect = 2.910e-63
Identity = 100/132 (75.76%), Postives = 112/132 (84.85%), Query Frame = 1
Query:    1 MKSSLQAGVSADTSVVVDRERTIDFMGERARVYATPMLVRDIEMACRELLLQHLDPGEDSVGTRIELDHLAATLLGMKVTLKVSIGEVKGRAIGFEFSGSDDVEPICRGRHQRFVVDLATTESRLAAKAKKA 396
            MK SL AGVSA + + VDRERTIDFMGE+ARVYATPMLVRD+EMA RELLL HLDPGEDSVGTR+ELDHLAATL+GM V L V++ EVKGRA+   FSG D V+PICRG HQRFVVD+  TE RLAAKA+KA
Sbjct:    1 MKQSLAAGVSATSKLTVDRERTIDFMGEKARVYATPMLVRDLEMASRELLLPHLDPGEDSVGTRVELDHLAATLMGMAVELTVTVAEVKGRAVTLAFSGRDTVDPICRGTHQRFVVDVKKTEERLAAKAQKA 132          
BLAST of mRNA_P-wetherbeei_contig57655.1.1 vs. uniprot
Match: A0A0S8BC21_9PROT (LysR family transcriptional regulator n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8BC21_9PROT)

HSP 1 Score: 193 bits (491), Expect = 2.690e-61
Identity = 96/132 (72.73%), Postives = 111/132 (84.09%), Query Frame = 1
Query:    1 MKSSLQAGVSADTSVVVDRERTIDFMGERARVYATPMLVRDIEMACRELLLQHLDPGEDSVGTRIELDHLAATLLGMKVTLKVSIGEVKGRAIGFEFSGSDDVEPICRGRHQRFVVDLATTESRLAAKAKKA 396
            MKS+L AG+SA  S  VDRERTIDFMGE ARVYATPM+VRDIEM CRELLL+HL+PGEDSVGTR+E+DHLAATLLG  VT++  I EVKGRA+ FE SG+D ++ ICRGRH RFVVD+  TE RLAAK +KA
Sbjct:    1 MKSTLAAGLSASRSYAVDRERTIDFMGEAARVYATPMMVRDIEMTCRELLLEHLEPGEDSVGTRVEVDHLAATLLGQTVTIEAKIVEVKGRAVTFEISGTDGIDTICRGRHGRFVVDVKQTEQRLAAKKQKA 132          
BLAST of mRNA_P-wetherbeei_contig57655.1.1 vs. uniprot
Match: A0A1F4I578_9BURK (LysR family transcriptional regulator n=1 Tax=Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_69_20 TaxID=1797561 RepID=A0A1F4I578_9BURK)

HSP 1 Score: 192 bits (487), Expect = 1.170e-60
Identity = 97/135 (71.85%), Postives = 112/135 (82.96%), Query Frame = 1
Query:    1 MKSSLQAGVSADTSVVVDRERTIDFMGERARVYATPMLVRDIEMACRELLLQHLDPGEDSVGTRIELDHLAATLLGMKVTLKVSIGEVKGRAIGFEFSGSDDVEPICRGRHQRFVVDLATTESRLAAKAKKAQEA 405
            MKSSLQAG+ A+++  V+RERTIDFMGE ARVYATPMLVRDIE+ACR LLL HLD GEDSVGTR+E+DH+AATLLGM+VTL V + EV GRAI FE  G D VEPI RG+H RFVVD+A T  RLA KA+KA+ A
Sbjct:    1 MKSSLQAGLGAESTFTVERERTIDFMGEAARVYATPMLVRDIEIACRNLLLAHLDAGEDSVGTRVEIDHIAATLLGMRVTLNVRVAEVNGRAITFEIEGRDAVEPIVRGKHARFVVDVAKTGQRLAVKAEKARAA 135          
BLAST of mRNA_P-wetherbeei_contig57655.1.1 vs. uniprot
Match: A0A1G3IR32_9PROT (LysR family transcriptional regulator n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A1G3IR32_9PROT)

HSP 1 Score: 191 bits (484), Expect = 3.680e-60
Identity = 91/134 (67.91%), Postives = 111/134 (82.84%), Query Frame = 1
Query:    1 MKSSLQAGVSADTSVVVDRERTIDFMGERARVYATPMLVRDIEMACRELLLQHLDPGEDSVGTRIELDHLAATLLGMKVTLKVSIGEVKGRAIGFEFSGSDDVEPICRGRHQRFVVDLATTESRLAAKAKKAQE 402
            MK++L AG++A     +DRERTIDFMGE+ARVYATPMLVRDIEM CRE LL+HLDPGEDSVGTR+E+DHLAATLLGM+V + VS+ EVKGRA+ F     D ++ +CRG+H RFVVD+  TE+RL AKAKKA+E
Sbjct:    1 MKTTLTAGIAAKRKYRIDRERTIDFMGEQARVYATPMLVRDIEMTCREFLLEHLDPGEDSVGTRVEIDHLAATLLGMEVEISVSVAEVKGRAVTFAVEAHDGIDAVCRGKHMRFVVDVKQTEARLGAKAKKARE 134          
BLAST of mRNA_P-wetherbeei_contig57655.1.1 vs. uniprot
Match: A0A1G3IH59_9PROT (LysR family transcriptional regulator n=1 Tax=Rhodospirillales bacterium RIFCSPLOWO2_12_FULL_67_15 TaxID=1802023 RepID=A0A1G3IH59_9PROT)

HSP 1 Score: 189 bits (479), Expect = 1.870e-59
Identity = 90/133 (67.67%), Postives = 111/133 (83.46%), Query Frame = 1
Query:    1 MKSSLQAGVSADTSVVVDRERTIDFMGERARVYATPMLVRDIEMACRELLLQHLDPGEDSVGTRIELDHLAATLLGMKVTLKVSIGEVKGRAIGFEFSGSDDVEPICRGRHQRFVVDLATTESRLAAKAKKAQ 399
            MK++LQAG++A  S  +DRERTIDFMGE+ARVYATPMLVRDIE+ CRE LL HLD GEDSVGTR+E+DHLAATLLGM+V + + + EVKGRA+ F     D ++P+CRG+H RFVVDL  TE+RLAAKA+KA+
Sbjct:    1 MKTTLQAGLAAKRSFRIDRERTIDFMGEKARVYATPMLVRDIEVTCREFLLAHLDAGEDSVGTRVEIDHLAATLLGMEVEISIGVAEVKGRAVTFTVEAHDGIDPVCRGKHMRFVVDLKQTEARLAAKAQKAK 133          
BLAST of mRNA_P-wetherbeei_contig57655.1.1 vs. uniprot
Match: A0A8I1R9S1_9BURK (LysR family transcriptional regulator n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A8I1R9S1_9BURK)

HSP 1 Score: 187 bits (476), Expect = 5.180e-59
Identity = 96/132 (72.73%), Postives = 107/132 (81.06%), Query Frame = 1
Query:    1 MKSSLQAGVSADTSVVVDRERTIDFMGERARVYATPMLVRDIEMACRELLLQHLDPGEDSVGTRIELDHLAATLLGMKVTLKVSIGEVKGRAIGFEFSGSDDVEPICRGRHQRFVVDLATTESRLAAKAKKA 396
            MK SL  G +    + VDR RTIDFMGE ARVYATPMLV DIE+ACR+LLL+HLDPGEDSVGTRIELDH+AATLLGM V LKV+I EVKGRAI  +  G D V+ ICRGRH RFVVD+A T +RLAAKAKKA
Sbjct:    1 MKVSLAPGATRTARITVDRGRTIDFMGENARVYATPMLVLDIEVACRDLLLEHLDPGEDSVGTRIELDHMAATLLGMPVELKVTIAEVKGRAITLDIEGHDGVDAICRGRHHRFVVDVAQTAARLAAKAKKA 132          
BLAST of mRNA_P-wetherbeei_contig57655.1.1 vs. uniprot
Match: A0A5C7QKA8_9BURK (LysR family transcriptional regulator n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A5C7QKA8_9BURK)

HSP 1 Score: 187 bits (476), Expect = 5.350e-59
Identity = 93/132 (70.45%), Postives = 110/132 (83.33%), Query Frame = 1
Query:    1 MKSSLQAGVSADTSVVVDRERTIDFMGERARVYATPMLVRDIEMACRELLLQHLDPGEDSVGTRIELDHLAATLLGMKVTLKVSIGEVKGRAIGFEFSGSDDVEPICRGRHQRFVVDLATTESRLAAKAKKA 396
            MK SLQ GV+    V +DRERTIDFMGE+ARVYATP LVRDIE+ACRELLL HLD GEDSVGTR+ELDH  ATL+GMKV L+++I EV GR++ F+ SGSD ++ IC+ RHQRFVVD+A TE RLAAKA+KA
Sbjct:    1 MKPSLQPGVTRSVRVDIDRERTIDFMGEKARVYATPSLVRDIEVACRELLLAHLDAGEDSVGTRVELDHTGATLMGMKVELQIAIAEVNGRSVTFDVSGSDGIDAICKCRHQRFVVDVAKTEQRLAAKAQKA 132          
BLAST of mRNA_P-wetherbeei_contig57655.1.1 vs. uniprot
Match: A0A7C4I9L8_9PROT (LysR family transcriptional regulator n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C4I9L8_9PROT)

HSP 1 Score: 187 bits (475), Expect = 7.360e-59
Identity = 94/132 (71.21%), Postives = 106/132 (80.30%), Query Frame = 1
Query:    1 MKSSLQAGVSADTSVVVDRERTIDFMGERARVYATPMLVRDIEMACRELLLQHLDPGEDSVGTRIELDHLAATLLGMKVTLKVSIGEVKGRAIGFEFSGSDDVEPICRGRHQRFVVDLATTESRLAAKAKKA 396
            MK SL AG+ A   V VDRERTIDFMGE ARVYATPMLVRDIEMACRELLL+HLDPGEDSVGTR+E+DH+A TLLGM V L+V +  V GRA+ F+  G D VE ICR +H RFVVD+A T  RLAAKA+KA
Sbjct:    1 MKPSLVAGIEATRRVTVDRERTIDFMGEAARVYATPMLVRDIEMACRELLLEHLDPGEDSVGTRVEIDHIAPTLLGMPVELRVRVAGVDGRAVSFDVEGRDPVETICRAKHARFVVDVAKTAQRLAAKAQKA 132          
BLAST of mRNA_P-wetherbeei_contig57655.1.1 vs. uniprot
Match: A0A1D2SK96_9BURK (LysR family transcriptional regulator n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A1D2SK96_9BURK)

HSP 1 Score: 185 bits (469), Expect = 6.230e-58
Identity = 93/132 (70.45%), Postives = 108/132 (81.82%), Query Frame = 1
Query:    1 MKSSLQAGVSADTSVVVDRERTIDFMGERARVYATPMLVRDIEMACRELLLQHLDPGEDSVGTRIELDHLAATLLGMKVTLKVSIGEVKGRAIGFEFSGSDDVEPICRGRHQRFVVDLATTESRLAAKAKKA 396
            MK +L  G +  + + VDR+RTI FMGE ARVYATPMLV+DIE+ACRELLL+HLD GEDSVGTR+E+DHLAATLLGM V LKV+I EVKGRA+ FE  G D V+ ICRGRH RFVVD+  T +RLAAKAKKA
Sbjct:    1 MKPTLVPGATRTSKLTVDRDRTIGFMGENARVYATPMLVQDIEIACRELLLEHLDAGEDSVGTRVEIDHLAATLLGMPVELKVTIAEVKGRAVTFEVEGRDSVDAICRGRHSRFVVDVEGTAARLAAKAKKA 132          
BLAST of mRNA_P-wetherbeei_contig57655.1.1 vs. uniprot
Match: A0A1F3ZFF0_9PROT (LysR family transcriptional regulator n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_67_12 TaxID=1797483 RepID=A0A1F3ZFF0_9PROT)

HSP 1 Score: 185 bits (469), Expect = 6.230e-58
Identity = 93/135 (68.89%), Postives = 109/135 (80.74%), Query Frame = 1
Query:    1 MKSSLQAGVSADTSVVVDRERTIDFMGERARVYATPMLVRDIEMACRELLLQHLDPGEDSVGTRIELDHLAATLLGMKVTLKVSIGEVKGRAIGFEFSGSDDVEPICRGRHQRFVVDLATTESRLAAKAKKAQEA 405
            MK++L AGVS+   +VVDRERTIDFMGE ARVYATPMLVRDIEM CRELLL HLD GEDSVGTRIELDH A TLLGMKV ++  + E+KGRA+ FE S  D ++ ICR +H RF+VD+  TE RLAAKA+KA+ A
Sbjct:    1 MKTTLVAGVSSTREIVVDRERTIDFMGENARVYATPMLVRDIEMTCRELLLAHLDAGEDSVGTRIELDHTAPTLLGMKVRIEARVSELKGRAVTFEVSAHDGLDAICRCKHSRFIVDVKQTEQRLAAKAQKAKAA 135          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57655.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N9R787_9RHOO2.910e-6375.76LysR family transcriptional regulator n=1 Tax=Arom... [more]
A0A0S8BC21_9PROT2.690e-6172.73LysR family transcriptional regulator n=1 Tax=Beta... [more]
A0A1F4I578_9BURK1.170e-6071.85LysR family transcriptional regulator n=1 Tax=Burk... [more]
A0A1G3IR32_9PROT3.680e-6067.91LysR family transcriptional regulator n=2 Tax=Prot... [more]
A0A1G3IH59_9PROT1.870e-5967.67LysR family transcriptional regulator n=1 Tax=Rhod... [more]
A0A8I1R9S1_9BURK5.180e-5972.73LysR family transcriptional regulator n=1 Tax=Burk... [more]
A0A5C7QKA8_9BURK5.350e-5970.45LysR family transcriptional regulator n=1 Tax=Burk... [more]
A0A7C4I9L8_9PROT7.360e-5971.21LysR family transcriptional regulator n=2 Tax=Beta... [more]
A0A1D2SK96_9BURK6.230e-5870.45LysR family transcriptional regulator n=3 Tax=Prot... [more]
A0A1F3ZFF0_9PROT6.230e-5868.89LysR family transcriptional regulator n=1 Tax=Beta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57655contigP-wetherbeei_contig57655:45..461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1380394.JADL01000002_gene1592
Model size417
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.88e-49
EggNOG OGsCOG5496@1|root,COG5496@2|Bacteria,1RKFT@1224|Proteobacteria,2U5DE@28211|Alphaproteobacteria,2JUEU@204441|Rhodospirillales
DescriptionThioesterase
Cds size417
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186854.8996809-CDS-P-wetherbeei_contig57655:44..4611683186854.8996809-CDS-P-wetherbeei_contig57655:44..461Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57655 45..461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57655.1.1prot_P-wetherbeei_contig57655.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57655 45..461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57655.1.1

>prot_P-wetherbeei_contig57655.1.1 ID=prot_P-wetherbeei_contig57655.1.1|Name=mRNA_P-wetherbeei_contig57655.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
MKSSLQAGVSADTSVVVDRERTIDFMGERARVYATPMLVRDIEMACRELL
LQHLDPGEDSVGTRIELDHLAATLLGMKVTLKVSIGEVKGRAIGFEFSGS
DDVEPICRGRHQRFVVDLATTESRLAAKAKKAQEASRP*
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mRNA from alignment at P-wetherbeei_contig57655:45..461+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57655.1.1 ID=mRNA_P-wetherbeei_contig57655.1.1|Name=mRNA_P-wetherbeei_contig57655.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig57655:45..461+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAAGCAGCCTGCAAGCCGGCGTCAGCGCCGACACCTCGGTTGTCGT CGACCGCGAGCGCACGATCGACTTCATGGGCGAGAGAGCCCGTGTCTACG CCACGCCGATGCTGGTGCGCGACATCGAGATGGCCTGCCGCGAACTGCTG CTCCAGCACCTCGATCCCGGCGAGGACTCGGTGGGCACGCGCATCGAACT CGACCATCTGGCCGCCACCTTGCTGGGCATGAAGGTCACGCTGAAGGTGA GCATCGGCGAAGTCAAGGGCCGGGCGATCGGCTTCGAATTCAGCGGCAGT GACGATGTCGAGCCGATCTGCCGCGGCCGCCACCAGCGCTTCGTCGTCGA CCTGGCGACCACCGAATCGCGCCTGGCGGCGAAAGCGAAGAAGGCGCAGG AGGCCAGCCGGCCATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57655:45..461+

>mRNA_P-wetherbeei_contig57655.1.1 ID=mRNA_P-wetherbeei_contig57655.1.1|Name=mRNA_P-wetherbeei_contig57655.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig57655:45..461+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAAGCAGCCTGCAAGCCGGCGTCAGCGCCGACACCTCGGTTGTCGT
CGACCGCGAGCGCACGATCGACTTCATGGGCGAGAGAGCCCGTGTCTACG
CCACGCCGATGCTGGTGCGCGACATCGAGATGGCCTGCCGCGAACTGCTG
CTCCAGCACCTCGATCCCGGCGAGGACTCGGTGGGCACGCGCATCGAACT
CGACCATCTGGCCGCCACCTTGCTGGGCATGAAGGTCACGCTGAAGGTGA
GCATCGGCGAAGTCAAGGGCCGGGCGATCGGCTTCGAATTCAGCGGCAGT
GACGATGTCGAGCCGATCTGCCGCGGCCGCCACCAGCGCTTCGTCGTCGA
CCTGGCGACCACCGAATCGCGCCTGGCGGCGAAAGCGAAGAAGGCGCAGG
AGGCCAGCCGGCCATGA
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