mRNA_P-wetherbeei_contig57654.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57654.1.1
Unique NamemRNA_P-wetherbeei_contig57654.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57654.1.1 vs. uniprot
Match: UPI001907D6E3 (sugar phosphate isomerase/epimerase n=1 Tax=Rhodospirillum rubrum TaxID=1085 RepID=UPI001907D6E3)

HSP 1 Score: 87.4 bits (215), Expect = 1.240e-17
Identity = 53/168 (31.55%), Postives = 80/168 (47.62%), Query Frame = 1
Query:    1 DLGSPLVVTEAGSRHPLDDWAPCLENGSPAAMQLLIDTLGELTEHARKCGATLVLEPSVGTVVDTPSQIALISEALPSRSFGFVADWPNLIDGSNIDSAPDVLSAMTAPLAGRVLLAHFKDANRVSGQ-RREVHHHASNADLY---GGVEYPAPGLGSLDLAKYAQWL 492
            DLG+P V++E G+ +   DW     N +    Q  +D +  L + A   GA  ++E  V  VV +  ++  +   LP    G + D  N  D +NID     L  +   L  R+ +AH KD  + + Q  +     AS A  +   GGV+ PAPGLGSL+   Y + L
Sbjct:   98 DLGTPYVISETGTFNSESDWVHHPRNKTAEGYQEALDEIAGLAQEAYDHGAVFLVENYVNNVVGSVDEVLRLFADLPHPGLGLLMDPTNYFDDANIDHVDATLDRIFDALGERIRIAHAKDCKKAANQAEKHAALDASEAHTFRGAGGVDLPAPGLGSLNYEHYLRRL 265          
BLAST of mRNA_P-wetherbeei_contig57654.1.1 vs. uniprot
Match: A0A7V9H8E9_9ACTN (Sugar phosphate isomerase/epimerase n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A7V9H8E9_9ACTN)

HSP 1 Score: 67.8 bits (164), Expect = 3.220e-10
Identity = 49/163 (30.06%), Postives = 69/163 (42.33%), Query Frame = 1
Query:    4 LGSPLVVTEAGSRHPLDDWAPCLENGSPAAMQLLIDTLGELTEHARKCGATLVLEPSVGTVVDTPSQIALISEALPSRSFGFVADWPNLIDGSNIDSAPDVLSAMTAPLAGRVLLAHFKDANRVSGQRREVHHHASNADLYGGVEYPAPGLGSLDLAKYAQWL 492
            LG+ +V TE G+RHP  DW    EN S AA   L +++  L   A + G  L +E  V  V+ TP Q+  + E  PS     V D  N +    + +   V+  +      R +LAH KD              A   D  GG+  P  G G      Y ++L
Sbjct:  289 LGTGVVATETGTRHPDSDWTDVRENWSEAAWGDLDESIEALLPVAERTGTVLAIEAHVENVLKTPGQLIGLLERFPSPYLQVVCDPYNYLSRHLVPAQERVVGDILDRFEHRFVLAHLKDV-------------AIEPD--GGITTPEFGTGVFAQRPYLEFL 436          
BLAST of mRNA_P-wetherbeei_contig57654.1.1 vs. uniprot
Match: A0A2D5LAQ8_9GAMM (Xylose isomerase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D5LAQ8_9GAMM)

HSP 1 Score: 62.0 bits (149), Expect = 2.080e-8
Identity = 36/124 (29.03%), Postives = 56/124 (45.16%), Query Frame = 1
Query:    1 DLGSPLVVTEAGSRHPLDDWAPCLENGSPAAMQLLIDTLGELTEHARKCGATLVLEPSVGTVVDTPSQIALISEALPSRSFGFVADWPNLIDGSNIDSAPDVLSAMTAPLAGRVLLAHFKDANR 372
            D+G+ ++ T  GSRHP + W    +N S     +L DTL +L  HA      L  EP +  V  + ++   + + + S +   V D  NL     +    +VL      L   V +AH KD +R
Sbjct:   98 DVGTSVLATCTGSRHPENMWRTHPDNDSAETWAVLRDTLEQLLPHAEAHNVMLAFEPEICQVASSAAKSKRLIDEMGSPNLKVVLDAANLFGEGELPRMSEVLDEAFQLLGDHVAIAHAKDLDR 221          
BLAST of mRNA_P-wetherbeei_contig57654.1.1 vs. uniprot
Match: UPI0013EB40EB (sugar phosphate isomerase/epimerase n=1 Tax=Aquisphaera sp. JC669 TaxID=2712864 RepID=UPI0013EB40EB)

HSP 1 Score: 61.6 bits (148), Expect = 2.930e-8
Identity = 48/159 (30.19%), Postives = 77/159 (48.43%), Query Frame = 1
Query:    1 DLGSPLVVTEAGSRHPLDDWAPCLENGSPAAMQLLIDTLGELTEHARKCGATLVLEPSVGTVVDTPSQIALISEALPSRSFGFVADWPNLIDGSNIDSAPDVLSAMTAPLAGRVLLAHFKDANRVSGQRREVHHHASNADLYGGVEYPAPGLGSLDLAK 477
            +LG+P V TE G   PL++          AA+ L ++ L  L EHA K G  L++EP  G +++T  Q   +++ + + S G      N   G     + D+ +A+ A LAG++   HF+D   ++  R  VHHH              PG G++D A+
Sbjct:  110 ELGAPHVTTEPGG--PLEEG-----RSRQAAIDLFVEILKPLAEHAEKSGVLLLIEPEPGLLLETSDQYEEVADRVDAPSLGL-----NFDVGHAYCVSEDIPAAI-ARLAGQIRHYHFED---IAATR--VHHHL------------VPGTGAIDFAE 238          
BLAST of mRNA_P-wetherbeei_contig57654.1.1 vs. uniprot
Match: A0A6L7VKE6_9GAMM (Sugar phosphate isomerase/epimerase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7VKE6_9GAMM)

HSP 1 Score: 58.5 bits (140), Expect = 3.600e-7
Identity = 40/163 (24.54%), Postives = 61/163 (37.42%), Query Frame = 1
Query:    4 LGSPLVVTEAGSRHPLDDWAPCLENGSPAAMQLLIDTLGELTEHARKCGATLVLEPSVGTVVDTPSQIALISEALPSRSFGFVADWPNLIDGSNIDSAPDVLSAMTAPLAGRVLLAHFKDANRVSGQRREVHHHASNADLYGGVEYPAPGLGSLDLAKYAQWL 492
            +G+ ++ T  GSRHP   W    +N S     +L  TL E+   A   G  L  EP +  V     +   + + + S +   V D  N+    ++    D+L      L   + +AH KD                  D  G   +   G G LD A+Y   L
Sbjct:   99 VGTSVIATCTGSRHPESMWRHHPDNASEETWHVLRATLEEVLPVAEAAGVALAFEPEINNVASDAKKSRRLIDEMQSPNLKVVMDAANIFGEHDLPRMSDILDEAFELLGDHIAMAHGKDL-----------------DHGGDAGHLPAGTGKLDYARYVSLL 244          
BLAST of mRNA_P-wetherbeei_contig57654.1.1 vs. uniprot
Match: A0A6B0YB27_9GAMM (Sugar phosphate isomerase/epimerase n=3 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6B0YB27_9GAMM)

HSP 1 Score: 58.5 bits (140), Expect = 3.620e-7
Identity = 41/163 (25.15%), Postives = 64/163 (39.26%), Query Frame = 1
Query:    4 LGSPLVVTEAGSRHPLDDWAPCLENGSPAAMQLLIDTLGELTEHARKCGATLVLEPSVGTVVDTPSQIALISEALPSRSFGFVADWPNLIDGSNIDSAPDVLSAMTAPLAGRVLLAHFKDANRVSGQRREVHHHASNADLYGGVEYPAPGLGSLDLAKYAQWL 492
            +G+ +V T  GSRHP   W    +N SP A + +   L ++   A   G  +  EP +  V     +   + + + S +   V D  N+    ++    +VL      L   V +AH KD                  D  G   + A G G LD A+Y + L
Sbjct:   99 VGTSVVATCTGSRHPESMWRHHPDNASPEAWRDVCAVLEQVLPTAEAAGVMVAFEPEINNVASDAKKSRRLIDEMGSPNLKVVMDAANIFGKDDLPRMTEVLDEAFDLLGDHVAIAHGKDL-----------------DHGGDAGHLAAGTGKLDYARYVRLL 244          
BLAST of mRNA_P-wetherbeei_contig57654.1.1 vs. uniprot
Match: A0A5B9WCM3_9BACT (D-tagatose 3-epimerase n=1 Tax=Aquisphaera giovannonii TaxID=406548 RepID=A0A5B9WCM3_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 1.760e-6
Identity = 45/159 (28.30%), Postives = 73/159 (45.91%), Query Frame = 1
Query:    1 DLGSPLVVTEAGSRHPLDDWAPCLENGSPAAMQLLIDTLGELTEHARKCGATLVLEPSVGTVVDTPSQIALISEALPSRSFGFVADWPNLIDGSNIDSAPDVLSAMTAPLAGRVLLAHFKDANRVSGQRREVHHHASNADLYGGVEYPAPGLGSLDLAK 477
            +LG+P V TE G   PL+           AA+ L ++ L  L EHA +CG  L++EP  G +++T  Q   +++ + + S G      N   G       D+  A+ A +A ++   H +D   ++  R  VHHH              PG G++D A+
Sbjct:  110 ELGAPHVTTEPGG--PLEPG-----QSRQAAVDLFVEVLKPLAEHAERCGVLLLIEPEPGLLLETTDQYEEVADKVDAPSLGL-----NFDVGHAFCVGEDIPRAI-ARMARQIRHYHLED---IAATR--VHHHL------------VPGTGAIDFAE 238          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57654.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
UPI001907D6E31.240e-1731.55sugar phosphate isomerase/epimerase n=1 Tax=Rhodos... [more]
A0A7V9H8E9_9ACTN3.220e-1030.06Sugar phosphate isomerase/epimerase n=1 Tax=Soliru... [more]
A0A2D5LAQ8_9GAMM2.080e-829.03Xylose isomerase n=1 Tax=Gammaproteobacteria bacte... [more]
UPI0013EB40EB2.930e-830.19sugar phosphate isomerase/epimerase n=1 Tax=Aquisp... [more]
A0A6L7VKE6_9GAMM3.600e-724.54Sugar phosphate isomerase/epimerase n=1 Tax=Gammap... [more]
A0A6B0YB27_9GAMM3.620e-725.15Sugar phosphate isomerase/epimerase n=3 Tax=Gammap... [more]
A0A5B9WCM3_9BACT1.760e-628.30D-tagatose 3-epimerase n=1 Tax=Aquisphaera giovann... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57654contigP-wetherbeei_contig57654:19..510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1178482.BJB45_00435
PFAMsAP_endonuc_2
Model size492
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.97e-16
EggNOG OGsCOG1082@1|root,COG1082@2|Bacteria,1Q8JG@1224|Proteobacteria,1SEWD@1236|Gammaproteobacteria
DescriptionXylose isomerase-like TIM barrel
Cds size492
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186854.8719356-CDS-P-wetherbeei_contig57654:18..5101683186854.8719356-CDS-P-wetherbeei_contig57654:18..510Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57654 19..510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57654.1.1prot_P-wetherbeei_contig57654.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57654 19..510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57654.1.1

>prot_P-wetherbeei_contig57654.1.1 ID=prot_P-wetherbeei_contig57654.1.1|Name=mRNA_P-wetherbeei_contig57654.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
DLGSPLVVTEAGSRHPLDDWAPCLENGSPAAMQLLIDTLGELTEHARKCG
ATLVLEPSVGTVVDTPSQIALISEALPSRSFGFVADWPNLIDGSNIDSAP
DVLSAMTAPLAGRVLLAHFKDANRVSGQRREVHHHASNADLYGGVEYPAP
GLGSLDLAKYAQWL
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mRNA from alignment at P-wetherbeei_contig57654:19..510-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57654.1.1 ID=mRNA_P-wetherbeei_contig57654.1.1|Name=mRNA_P-wetherbeei_contig57654.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig57654:19..510- (Phaeothamnion wetherbeei SAG_119_79)
GATCTGGGGTCTCCGCTCGTCGTAACGGAAGCCGGCAGCCGTCATCCTCT TGATGACTGGGCCCCGTGTTTGGAGAATGGGAGCCCTGCAGCCATGCAAC TCTTGATAGATACATTGGGCGAACTTACCGAGCATGCCCGAAAATGCGGC GCAACCCTTGTACTTGAGCCATCGGTGGGTACGGTTGTCGATACGCCAAG CCAGATTGCATTGATTTCTGAAGCGCTGCCGTCACGTTCATTTGGGTTTG TGGCCGACTGGCCCAATCTGATCGATGGTTCGAATATTGATAGCGCACCG GATGTATTGTCGGCAATGACAGCACCGCTCGCCGGACGGGTGTTGCTCGC ACATTTCAAGGACGCCAATCGCGTTTCCGGGCAGCGGCGTGAAGTGCATC ATCATGCCAGCAATGCTGATTTGTATGGCGGTGTGGAATACCCTGCCCCG GGGCTGGGGTCTCTTGATCTCGCAAAGTACGCTCAATGGCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57654:19..510-

>mRNA_P-wetherbeei_contig57654.1.1 ID=mRNA_P-wetherbeei_contig57654.1.1|Name=mRNA_P-wetherbeei_contig57654.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig57654:19..510- (Phaeothamnion wetherbeei SAG_119_79)
GATCTGGGGTCTCCGCTCGTCGTAACGGAAGCCGGCAGCCGTCATCCTCT
TGATGACTGGGCCCCGTGTTTGGAGAATGGGAGCCCTGCAGCCATGCAAC
TCTTGATAGATACATTGGGCGAACTTACCGAGCATGCCCGAAAATGCGGC
GCAACCCTTGTACTTGAGCCATCGGTGGGTACGGTTGTCGATACGCCAAG
CCAGATTGCATTGATTTCTGAAGCGCTGCCGTCACGTTCATTTGGGTTTG
TGGCCGACTGGCCCAATCTGATCGATGGTTCGAATATTGATAGCGCACCG
GATGTATTGTCGGCAATGACAGCACCGCTCGCCGGACGGGTGTTGCTCGC
ACATTTCAAGGACGCCAATCGCGTTTCCGGGCAGCGGCGTGAAGTGCATC
ATCATGCCAGCAATGCTGATTTGTATGGCGGTGTGGAATACCCTGCCCCG
GGGCTGGGGTCTCTTGATCTCGCAAAGTACGCTCAATGGCTT
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