mRNA_P-wetherbeei_contig57650.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57650.1.1
Unique NamemRNA_P-wetherbeei_contig57650.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57650.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57650contigP-wetherbeei_contig57650:171..416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog379731.PST_2943
Preferred namefimV
PFAMsLysM
Model size246
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K08086
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000141
EggNOG OGsCOG3170@1|root,COG3170@2|Bacteria,1RDH8@1224|Proteobacteria,1RRAZ@1236|Gammaproteobacteria,1Z2ZN@136846|Pseudomonas stutzeri group
DescriptionTfp pilus assembly protein FimV
Cds size246
COG categoryNU
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186854.8451672-CDS-P-wetherbeei_contig57650:170..4161683186854.8451672-CDS-P-wetherbeei_contig57650:170..416Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57650 171..416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57650.1.1prot_P-wetherbeei_contig57650.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57650 171..416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57650.1.1

>prot_P-wetherbeei_contig57650.1.1 ID=prot_P-wetherbeei_contig57650.1.1|Name=mRNA_P-wetherbeei_contig57650.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=82bp
GNYGPVRAGQSLWGILKETGLARGDSHALMREIVAANPHAFVGADARRLR
LGVMLQLPAAVRAGNALAPSAVAPPRSTVAQA
back to top

mRNA from alignment at P-wetherbeei_contig57650:171..416+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57650.1.1 ID=mRNA_P-wetherbeei_contig57650.1.1|Name=mRNA_P-wetherbeei_contig57650.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig57650:171..416+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAACTACGGCCCGGTGCGCGCCGGACAATCCTTGTGGGGCATACTCAA
GGAGACTGGACTTGCTCGCGGCGACAGCCATGCGCTGATGCGCGAAATCG
TGGCCGCCAATCCGCACGCTTTCGTCGGCGCAGACGCCAGGCGTCTGCGC
CTTGGAGTAATGCTGCAATTGCCGGCTGCCGTGCGCGCTGGCAATGCGCT
AGCGCCAAGTGCAGTTGCCCCACCGCGGTCTACTGTCGCCCAGGCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig57650:171..416+

>mRNA_P-wetherbeei_contig57650.1.1 ID=mRNA_P-wetherbeei_contig57650.1.1|Name=mRNA_P-wetherbeei_contig57650.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig57650:171..416+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAACTACGGCCCGGTGCGCGCCGGACAATCCTTGTGGGGCATACTCAA
GGAGACTGGACTTGCTCGCGGCGACAGCCATGCGCTGATGCGCGAAATCG
TGGCCGCCAATCCGCACGCTTTCGTCGGCGCAGACGCCAGGCGTCTGCGC
CTTGGAGTAATGCTGCAATTGCCGGCTGCCGTGCGCGCTGGCAATGCGCT
AGCGCCAAGTGCAGTTGCCCCACCGCGGTCTACTGTCGCCCAGGCG
back to top