mRNA_P-wetherbeei_contig57644.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57644.1.1
Unique NamemRNA_P-wetherbeei_contig57644.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57644.1.1 vs. uniprot
Match: A0A7V8WTH4_9CHLR (C40 family peptidase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8WTH4_9CHLR)

HSP 1 Score: 103 bits (258), Expect = 2.050e-26
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    1 AAPADNGATDANSAAPSPSGQGMVDFAMQYLGYPYVWAGKEPSTGFDCSGFTRWIVLNTLGYDIGGGVPGQTDFGTSIAWGDWQPGD 261
            AAP +NG T A   A + SGQ + DFA+Q++G PYVWAG  P+ GFDCSGFT++++LNT+G DIG G  GQT +G  + W  WQPGD
Sbjct:   24 AAPGENGQTTA--VAQTASGQYIADFALQFVGSPYVWAGNTPA-GFDCSGFTQYVILNTVGIDIGHGTAGQTGYGAFVTWDGWQPGD 107          
BLAST of mRNA_P-wetherbeei_contig57644.1.1 vs. uniprot
Match: A0A7W0A3S0_9CHLR (C40 family peptidase n=2 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0A3S0_9CHLR)

HSP 1 Score: 99.0 bits (245), Expect = 7.050e-24
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 1
Query:   55 SGQGMVDFAMQYLGYPYVWAGKEPSTGFDCSGFTRWIVLNTLGYDIGGGVPGQTDFGTSIAWGDWQPGD 261
            +GQ +V+FAMQYLG PYVWAG  P  GFDCSGFT++++ NT+G DIG GVPGQT +G  + W  W PGD
Sbjct:   94 TGQMIVNFAMQYLGSPYVWAGNGPG-GFDCSGFTQFVIANTVGIDIGQGVPGQTGYGAWVDWESWAPGD 161          
BLAST of mRNA_P-wetherbeei_contig57644.1.1 vs. uniprot
Match: A0A7W0A393_9CHLR (C40 family peptidase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0A393_9CHLR)

HSP 1 Score: 98.2 bits (243), Expect = 1.950e-23
Identity = 47/76 (61.84%), Postives = 53/76 (69.74%), Query Frame = 1
Query:   40 AAPSPSGQGMV--DFAMQYLGYPYVWAGKEPSTGFDCSGFTRWIVLNTLGYDIGGGVPGQTDFGTSIAWGDWQPGD 261
            AAP P   G V   FAM + GYPYVWAG  P+ GFDCSGFT+++VLNTLG DI  GVP Q  FG S+ WG W PGD
Sbjct:  102 AAPPPPSTGSVVAGFAMMFAGYPYVWAGNTPA-GFDCSGFTQYVVLNTLGIDISHGVPNQAGFGWSVDWGMWAPGD 176          
BLAST of mRNA_P-wetherbeei_contig57644.1.1 vs. uniprot
Match: A0A7W0SRA8_9CHLR (C40 family peptidase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0SRA8_9CHLR)

HSP 1 Score: 96.7 bits (239), Expect = 4.450e-23
Identity = 42/68 (61.76%), Postives = 52/68 (76.47%), Query Frame = 1
Query:   58 GQGMVDFAMQYLGYPYVWAGKEPSTGFDCSGFTRWIVLNTLGYDIGGGVPGQTDFGTSIAWGDWQPGD 261
            GQ + DFA+Q+ GYPYVWAG  P  GFDCSGFT++++LNT+G DIG GV  QT  G  + WG+WQPGD
Sbjct:   85 GQYIADFALQFQGYPYVWAGNGPG-GFDCSGFTQYVLLNTIGIDIGHGVAEQTYSGAWVNWGEWQPGD 151          
BLAST of mRNA_P-wetherbeei_contig57644.1.1 vs. uniprot
Match: A0A7V8VVQ4_9CHLR (C40 family peptidase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8VVQ4_9CHLR)

HSP 1 Score: 89.0 bits (219), Expect = 4.180e-20
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   25 TDANSAAPSPSGQG--MVDFAMQYLGYPYVWAGKEPSTGFDCSGFTRWIVLNTLGYDIGGGVPGQTDFGTSIAWGDWQPGD 261
            T A S+A    G G  + D+A+Q+LGY YV+ G  PS GFDCSGFT+++V NTLG DIG G  GQ   GT + WG+WQ GD
Sbjct:   70 TAAESSATYQDGTGSYIADYALQFLGYSYVYGGNTPS-GFDCSGFTQYVVQNTLGIDIGHGTAGQLSAGTWVNWGEWQAGD 149          
BLAST of mRNA_P-wetherbeei_contig57644.1.1 vs. uniprot
Match: A0A7W0SC20_9CHLR (C40 family peptidase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0SC20_9CHLR)

HSP 1 Score: 82.4 bits (202), Expect = 1.710e-17
Identity = 36/68 (52.94%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   58 GQGMVDFAMQYLGYPYVWAGKEPSTGFDCSGFTRWIVLNTLGYDIGGGVPGQTDFGTSIAWGDWQPGD 261
            G  +  FA+ Y GYPYVWAG  P  GFDCSGFT W++LN +G DIG  +  Q   G  + +G WQPGD
Sbjct:   92 GDAIAGFAVSYQGYPYVWAGNGPG-GFDCSGFTEWVILNIVGVDIGHDLQSQPYTGYWVDYGAWQPGD 158          
BLAST of mRNA_P-wetherbeei_contig57644.1.1 vs. uniprot
Match: A0A7W0A2R1_9CHLR (C40 family peptidase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0A2R1_9CHLR)

HSP 1 Score: 79.7 bits (195), Expect = 1.700e-15
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 1
Query:    1 AAPADNGATDANSAAPSPSGQGMVDFAMQYLGYPYVWAGKEPSTGFDCSGFTRWIVLNTLGYDIGGGVPGQTDFGTSIAWGDWQPGD 261
            A PA+NG +          G  + ++A+QY GYPYVWAG+ P  GFDCSGF  W++ NT+G +I   +  Q D GT +A+G+ QPGD
Sbjct:  594 APPANNGGS---------GGSAIANYALQYQGYPYVWAGEGPY-GFDCSGFVLWVIRNTVGTNITHDMFVQYDMGTPVAYGNLQPGD 670          
BLAST of mRNA_P-wetherbeei_contig57644.1.1 vs. uniprot
Match: A0A6J4V9J7_9CHLR (NLP/P60 n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4V9J7_9CHLR)

HSP 1 Score: 78.6 bits (192), Expect = 3.730e-15
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = 1
Query:   55 SGQGMVDFAMQYLGYPYVWAGKEPSTGFDCSGFTRWIVLNTLGYDIGGGVPGQTDFGTSIAWGDWQPGD 261
            SGQ + DFAM ++GYPYV+AG +PS GFDCSGFT ++V  TLG  I      Q+  GT +  G+ QPGD
Sbjct:  301 SGQAIADFAMGFVGYPYVYAGADPS-GFDCSGFTMYVVQQTLGMSIPHDTAAQSGVGTPVGKGELQPGD 368          
BLAST of mRNA_P-wetherbeei_contig57644.1.1 vs. uniprot
Match: UPI001F22029E (C40 family peptidase n=1 Tax=Pseudoflavonifractor phocaeensis TaxID=1870988 RepID=UPI001F22029E)

HSP 1 Score: 77.4 bits (189), Expect = 5.710e-15
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   28 DANSAAPSPSGQGMVDFAMQYLGYPYVWAGKEPSTGFDCSGFTRWIVLNTLGYDIGGGVPGQTDFGTSIAWGDWQPGD 261
            DA  AA S  GQ + DFA+QY+GYPYV+ G  P  GFDCSGFTR+ V +  GY I      Q D GT+++  + QPGD
Sbjct:  187 DAAEAARSSKGQEIADFALQYVGYPYVYGGSSPK-GFDCSGFTRY-VYSQFGYSINRTASNQLDNGTAVSMSELQPGD 262          
BLAST of mRNA_P-wetherbeei_contig57644.1.1 vs. uniprot
Match: A0A7W0QQY5_9CHLR (C40 family peptidase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0QQY5_9CHLR)

HSP 1 Score: 76.3 bits (186), Expect = 2.040e-14
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 1
Query:   55 SGQGMVDFAMQYLGYPYVWAGKEPSTGFDCSGFTRWIVLNTLGYDIGGGVPGQTDFGTSIAWGDWQPGD 261
            +G  + ++AM+Y+GYPYVWA   PS+ FDCSGFT W++ N +G DIG G+  Q   G +I   D QPGD
Sbjct:  242 TGNAIANYAMRYVGYPYVWATAGPSS-FDCSGFTNWVIKNVVGPDIGRGLWTQWASGVAINRADLQPGD 309          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57644.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V8WTH4_9CHLR2.050e-2656.32C40 family peptidase n=1 Tax=Chloroflexia bacteriu... [more]
A0A7W0A3S0_9CHLR7.050e-2462.32C40 family peptidase n=2 Tax=Chloroflexia bacteriu... [more]
A0A7W0A393_9CHLR1.950e-2361.84C40 family peptidase n=1 Tax=Chloroflexia bacteriu... [more]
A0A7W0SRA8_9CHLR4.450e-2361.76C40 family peptidase n=1 Tax=Chloroflexia bacteriu... [more]
A0A7V8VVQ4_9CHLR4.180e-2054.32C40 family peptidase n=1 Tax=Chloroflexia bacteriu... [more]
A0A7W0SC20_9CHLR1.710e-1752.94C40 family peptidase n=1 Tax=Chloroflexia bacteriu... [more]
A0A7W0A2R1_9CHLR1.700e-1545.98C40 family peptidase n=1 Tax=Chloroflexia bacteriu... [more]
A0A6J4V9J7_9CHLR3.730e-1553.62NLP/P60 n=1 Tax=uncultured Thermomicrobiales bacte... [more]
UPI001F22029E5.710e-1551.28C40 family peptidase n=1 Tax=Pseudoflavonifractor ... [more]
A0A7W0QQY5_9CHLR2.040e-1450.72C40 family peptidase n=1 Tax=Chloroflexia bacteriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57644contigP-wetherbeei_contig57644:248..508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog545697.HMPREF0216_01256
PFAMsNLPC_P60,SH3_3
Model size261
Max annot lvl186801|Clostridia
KEGG koko:K21471
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.06e-14
EggNOG OGsCOG0791@1|root,COG3883@1|root,COG0791@2|Bacteria,COG3883@2|Bacteria,1UVYK@1239|Firmicutes,249G6@186801|Clostridia,36FW2@31979|Clostridiaceae
DescriptionNLP P60 protein
Cds size261
COG categoryM
BRITEko00000,ko01000,ko01002,ko01011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186854.819114-CDS-P-wetherbeei_contig57644:247..5081683186854.819114-CDS-P-wetherbeei_contig57644:247..508Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57644 248..508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57644.1.1prot_P-wetherbeei_contig57644.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57644 248..508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57644.1.1

>prot_P-wetherbeei_contig57644.1.1 ID=prot_P-wetherbeei_contig57644.1.1|Name=mRNA_P-wetherbeei_contig57644.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp
AAPADNGATDANSAAPSPSGQGMVDFAMQYLGYPYVWAGKEPSTGFDCSG
FTRWIVLNTLGYDIGGGVPGQTDFGTSIAWGDWQPGD
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mRNA from alignment at P-wetherbeei_contig57644:248..508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57644.1.1 ID=mRNA_P-wetherbeei_contig57644.1.1|Name=mRNA_P-wetherbeei_contig57644.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig57644:248..508+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCGCCGGCCGACAACGGCGCCACCGACGCGAACTCCGCCGCCCCATC CCCCTCCGGGCAGGGCATGGTCGATTTCGCCATGCAGTATCTCGGCTATC CCTACGTCTGGGCCGGCAAGGAGCCGAGCACCGGCTTCGACTGCTCCGGC TTCACCCGCTGGATCGTCCTCAACACGCTGGGGTACGACATCGGCGGCGG TGTACCCGGCCAGACCGACTTCGGCACCTCCATCGCCTGGGGTGACTGGC AGCCCGGCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57644:248..508+

>mRNA_P-wetherbeei_contig57644.1.1 ID=mRNA_P-wetherbeei_contig57644.1.1|Name=mRNA_P-wetherbeei_contig57644.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig57644:248..508+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCGCCGGCCGACAACGGCGCCACCGACGCGAACTCCGCCGCCCCATC
CCCCTCCGGGCAGGGCATGGTCGATTTCGCCATGCAGTATCTCGGCTATC
CCTACGTCTGGGCCGGCAAGGAGCCGAGCACCGGCTTCGACTGCTCCGGC
TTCACCCGCTGGATCGTCCTCAACACGCTGGGGTACGACATCGGCGGCGG
TGTACCCGGCCAGACCGACTTCGGCACCTCCATCGCCTGGGGTGACTGGC
AGCCCGGCGAC
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