mRNA_P-wetherbeei_contig57594.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57594.1.1
Unique NamemRNA_P-wetherbeei_contig57594.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57594.1.1 vs. uniprot
Match: A0A4R6WWJ2_9PROT (2-keto-3-deoxy-L-rhamnonate aldolase RhmA n=2 Tax=Dongia mobilis TaxID=578943 RepID=A0A4R6WWJ2_9PROT)

HSP 1 Score: 193 bits (490), Expect = 2.430e-56
Identity = 99/164 (60.37%), Postives = 121/164 (73.78%), Query Frame = 1
Query:    1 MENPVLNKLRAGGCVGAMWTTLGAPVIAELMVQDGADAIVFDLQHGLWTRPLLESAIGMVRDKAVPMVRTQDDSYFAIGSALDAGALGIIVPVVETAEQARKIVEAAKYPPQGKRSSGGIRSVIDAKALVPKTNDLIFVAAMIETTVGVENAAAIAAVPGIDML 492
            M NP+  KL AGGC+   W T+G+P +AE+M + G D++VFDLQHGLW R  LE AIG+VR +AVP+VR+ DDS FAIGS LDAGA  +IVP+V+TAEQAR +V  AKYPP G RS GG R ++D K+ +   ND I VA MIET   V NAA IAAVPGID+L
Sbjct:    1 MGNPLKVKLAAGGCITCHWATIGSPSVAEIMAESGPDSVVFDLQHGLWDRAGLEHAIGLVRHRAVPVVRSADDSDFAIGSVLDAGAGALIVPMVDTAEQARAVVRKAKYPPLGSRSGGGTRPMLDYKSYIGGANDDILVAVMIETAEAVANAAEIAAVPGIDIL 164          
BLAST of mRNA_P-wetherbeei_contig57594.1.1 vs. uniprot
Match: A0A5C7NS96_9PROT (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A5C7NS96_9PROT)

HSP 1 Score: 183 bits (465), Expect = 1.170e-52
Identity = 95/164 (57.93%), Postives = 114/164 (69.51%), Query Frame = 1
Query:    1 MENPVLNKLRAGGCVGAMWTTLGAPVIAELMVQDGADAIVFDLQHGLWTRPLLESAIGMVRDKAVPMVRTQDDSYFAIGSALDAGALGIIVPVVETAEQARKIVEAAKYPPQGKRSSGGIRSVIDAKALVPKTNDLIFVAAMIETTVGVENAAAIAAVPGIDML 492
            + NP+  KL AG CV   W  LG+P +AE+M Q   DA+VFDLQHGLWTR  LE  IG+VR    P+ R  ++S  AIGSALDAGA+G+IVP VETA+QA   V AAKYPP+G RS G +R + DA + V + N   FVA MIET  GVENAA IAA PGIDM+
Sbjct:    4 ISNPIRQKLAAGDCVSCHWLVLGSPSVAEVMAQGQPDAMVFDLQHGLWTRETLEHGIGVVRGLTTPLCRVAENSPHAIGSALDAGAMGVIVPFVETADQAEAAVVAAKYPPRGMRSFGNVRPIFDAASYVNEANANTFVAVMIETAKGVENAAEIAATPGIDMI 167          
BLAST of mRNA_P-wetherbeei_contig57594.1.1 vs. uniprot
Match: UPI000699840C (aldolase/citrate lyase family protein n=1 Tax=Sphingomonas sp. Y57 TaxID=334801 RepID=UPI000699840C)

HSP 1 Score: 165 bits (417), Expect = 3.960e-48
Identity = 87/164 (53.05%), Postives = 110/164 (67.07%), Query Frame = 1
Query:    1 MENPVLNKLRAGGCVGAMWTTLGAPVIAELMVQDGADAIVFDLQHGLWTRPLLESAIGMVRDKAVPMVRTQDDSYFAIGSALDAGALGIIVPVVETAEQARKIVEAAKYPPQGKRSSGGIRSVIDAKALVPKTNDLIFVAAMIETTVGVENAAAIAAVPGIDML 492
            M NP+L  LR GG V ++W+  G+   AE+M      A+VFD QHGLW R  L + I +VRD+A P+VRT D S  A+G ALD+GALG+IVP++ETA+QA   V AAKYPP G RS GGIR ++D  A     +  I V  MIET  GVENAAAIA  PG+D++
Sbjct:    1 MPNPLLETLRRGGSVSSLWSVTGSIAAAEIMAAARPAALVFDDQHGLWDRQTLFAGIAVVRDRATPLVRTVDGSPAAVGGALDSGALGVIVPMIETADQAAAAVAAAKYPPAGNRSGGGIRPLLDFPAYAATASRDILVGMMIETARGVENAAAIAKTPGVDLV 164          
BLAST of mRNA_P-wetherbeei_contig57594.1.1 vs. uniprot
Match: UPI001BD08ACD (aldolase/citrate lyase family protein n=1 Tax=Chelatococcus sp. YT9 TaxID=2835635 RepID=UPI001BD08ACD)

HSP 1 Score: 146 bits (369), Expect = 9.070e-41
Identity = 80/157 (50.96%), Postives = 101/157 (64.33%), Query Frame = 1
Query:   25 LRAGGCVGAMWTTLGAPVIAELMVQDGADAIVFDLQHGLWTRPLLESAIGMVRDKAVPMVRTQDDSYFAIGSALDAGALGIIVPVVETAEQARKIVEAAKYPPQGKRSSGGIRSVI-DAKALVPKTNDLIFVAAMIETTVGVENAAAIAAVPGIDML 492
            L  GG  GA W +LG+P + EL  Q G DAIV D QHGLW R  LE A+     K   +VRT D +  AI +ALDAGA+G+I P++ETAE+A ++VEAA++PP G RS GG+R +  D  A   + N    V  MIET  GV NA AIAAV GID++
Sbjct:   13 LTGGGQFGAFWFSLGSPTLVELATQAGPDAIVIDAQHGLWDRQSLEHAVAATGGKVPLLVRTLDATKGAISTALDAGAVGVIAPLIETAEEALRVVEAARFPPHGARSGGGVRPLAGDFAAYYAQANSHTLVGVMIETAAGVANAEAIAAVEGIDLV 169          
BLAST of mRNA_P-wetherbeei_contig57594.1.1 vs. uniprot
Match: A0A7S8II29_9HYPH (Aldolase n=1 Tax=Mesorhizobium sp. NBSH29 TaxID=2654249 RepID=A0A7S8II29_9HYPH)

HSP 1 Score: 145 bits (367), Expect = 1.550e-40
Identity = 77/157 (49.04%), Postives = 100/157 (63.69%), Query Frame = 1
Query:   22 KLRAGGCVGAMWTTLGAPVIAELMVQDGADAIVFDLQHGLWTRPLLESAIGMVRDKAVPMVRTQDDSYFAIGSALDAGALGIIVPVVETAEQARKIVEAAKYPPQGKRSSGGIRSVIDAKALVPKTNDLIFVAAMIETTVGVENAAAIAAVPGIDML 492
            +LRAG  +G +W +LG   IAE+    GADA+V DLQHGLW R   E A+G+   K   + R  ++S FAIGSALDAG  G++VP+VETAEQA   V AA++PP G RS GG+R +           + I V  MIET  G+ NA AIAA PG+D++
Sbjct:   12 RLRAGNPLGLVWLSLGHASIAEMAAHSGADALVIDLQHGLWERGTFEMAVGVSMGKVPVLARVAENSSFAIGSALDAGTDGVLVPMVETAEQAAAAVSAARFPPHGNRSGGGVRPLSMGFGAYLDKAETIVVGVMIETVKGIANAEAIAATPGLDLI 168          
BLAST of mRNA_P-wetherbeei_contig57594.1.1 vs. uniprot
Match: A0A2G4YVR6_9PROT (HpcH_HpaI domain-containing protein n=1 Tax=Paremcibacter congregatus TaxID=2043170 RepID=A0A2G4YVR6_9PROT)

HSP 1 Score: 145 bits (366), Expect = 1.760e-40
Identity = 78/150 (52.00%), Postives = 97/150 (64.67%), Query Frame = 1
Query:   43 VGAMWTTLGAPVIAELMVQDGADAIVFDLQHGLWTRPLLESAIGMVRDKAVPMVRTQDDSYFAIGSALDAGALGIIVPVVETAEQARKIVEAAKYPPQGKRSSGGIRSVIDAKALVPKTNDLIFVAAMIETTVGVENAAAIAAVPGIDML 492
            +G  W  LGA  + E + +  ADA+VFD QHGLW R  LESAIGMV+D+ +PMVR  D S FAI SALDAGA  +IVP++ETAE+A   V+ A YPP G RS GGIR + D  A   + +     A MIET  GV+N A I   P +DM+
Sbjct:   13 LGCFWLCLGALPLTEFVTETSADAVVFDAQHGLWDRRSLESAIGMVKDQMIPMVRLADGSRFAISSALDAGAEVVIVPLIETAEEAHNAVDWALYPPHGSRSGGGIRPLRDFPAYKEQADKTTVTALMIETARGVDNLAEILQTPHLDMI 162          
BLAST of mRNA_P-wetherbeei_contig57594.1.1 vs. uniprot
Match: UPI001BCE6677 (aldolase/citrate lyase family protein n=1 Tax=Chelatococcus sp. HY11 TaxID=2835634 RepID=UPI001BCE6677)

HSP 1 Score: 144 bits (364), Expect = 4.850e-40
Identity = 80/164 (48.78%), Postives = 102/164 (62.20%), Query Frame = 1
Query:    4 ENPVLNKLRAGGCVGAMWTTLGAPVIAELMVQDGADAIVFDLQHGLWTRPLLESAIGMVRDKAVPMVRTQDDSYFAIGSALDAGALGIIVPVVETAEQARKIVEAAKYPPQGKRSSGGIRSVI-DAKALVPKTNDLIFVAAMIETTVGVENAAAIAAVPGIDML 492
            E  +   L+ GG     W +LGAP + EL V  G DAIV D QHGLW R  LE A+     K   +VRT D +  AI +ALDAGA+G+I P++ETAE+AR +VEAA++PP+G RS GG+R +  D  A     N    V  MIET  GV NA AIAAV G+D++
Sbjct:    6 ERSLRQHLQEGGQFSVFWFSLGAPALIELAVTAGPDAIVVDAQHGLWDRHSLEHAVAATGGKVPLLVRTMDGTKGAISTALDAGAVGVIAPLIETAEEARHVVEAARFPPRGVRSGGGVRPLASDFAAYYAAANTHTLVGVMIETMAGVANAEAIAAVEGVDLV 169          
BLAST of mRNA_P-wetherbeei_contig57594.1.1 vs. uniprot
Match: A0A2V3TYZ1_9HYPH (2-dehydro-3-deoxyglucarate aldolase n=1 Tax=Chelatococcus asaccharovorans TaxID=28210 RepID=A0A2V3TYZ1_9HYPH)

HSP 1 Score: 144 bits (364), Expect = 6.800e-40
Identity = 80/157 (50.96%), Postives = 101/157 (64.33%), Query Frame = 1
Query:   25 LRAGGCVGAMWTTLGAPVIAELMVQDGADAIVFDLQHGLWTRPLLESAIGMVRDKAVPMVRTQDDSYFAIGSALDAGALGIIVPVVETAEQARKIVEAAKYPPQGKRSSGGIRSVI-DAKALVPKTNDLIFVAAMIETTVGVENAAAIAAVPGIDML 492
            L  GG  GA W +LG+P + EL      DAIV D QHGLW R  LE+A+ +   K   +VRT D S  AI +ALDAGA G+IVP++ETAE+AR+ VEAA++PP G RS GG+R +  D  A V   N   FV  MIET  GV  A AIA+V G+D++
Sbjct:   13 LHEGGQFGAFWFSLGSPALIELATAARPDAIVIDAQHGLWDRHSLENAVAVTGGKVPLLVRTMDSSKGAISTALDAGAAGVIVPLIETAEEARRTVEAARFPPHGVRSGGGVRPLAGDFAAYVADANAHTFVGVMIETVAGVAQAEAIASVEGLDLV 169          
BLAST of mRNA_P-wetherbeei_contig57594.1.1 vs. uniprot
Match: UPI00109DA21B (aldolase/citrate lyase family protein n=1 Tax=Sphingomonas flavalba TaxID=2559804 RepID=UPI00109DA21B)

HSP 1 Score: 142 bits (359), Expect = 2.530e-39
Identity = 76/163 (46.63%), Postives = 102/163 (62.58%), Query Frame = 1
Query:    7 NPVLNKLRAGGCVGAMWTTLGAPVIAELMVQDGADAIVFDLQHGLWTRPLLESAIGMVRDKAV-PMVRTQDDSYFAIGSALDAGALGIIVPVVETAEQARKIVEAAKYPPQGKRSSGGIRSVIDAKALVPKTNDLIFVAAMIETTVGVENAAAIAAVPGIDML 492
            N  L +LRAG  +  +W +LG+  +AE+  +   DAIV DLQHG W   +  +A+ +V    V P+ R  D    +IG ALDAGA G+IVP+V+TAE+A  +V AA YPP G RS GG+R + D  A +  +     VA MIET  G++NAAAIA  PG+DML
Sbjct:    8 NRTLARLRAGEAISCLWLSLGSAALAEIAAEQAPDAIVLDLQHGQWDSAMTHAALAVVAAWGVTPLARVADKQALSIGQALDAGAAGVIVPLVDTAEEAAAVVAAAHYPPHGVRSGGGMRPLRDFPAYLAASRTEALVAVMIETRAGLDNAAAIARTPGLDML 170          
BLAST of mRNA_P-wetherbeei_contig57594.1.1 vs. uniprot
Match: UPI00166C1E8E (aldolase/citrate lyase family protein n=1 Tax=Salinarimonas ramus TaxID=690164 RepID=UPI00166C1E8E)

HSP 1 Score: 142 bits (357), Expect = 6.540e-39
Identity = 77/157 (49.04%), Postives = 101/157 (64.33%), Query Frame = 1
Query:   22 KLRAGGCVGAMWTTLGAPVIAELMVQDGADAIVFDLQHGLWTRPLLESAIGMVRDKAVPMVRTQDDSYFAIGSALDAGALGIIVPVVETAEQARKIVEAAKYPPQGKRSSGGIRSVIDAKALVPKTNDLIFVAAMIETTVGVENAAAIAAVPGIDML 492
            +L +G  +   W  +G+P + E     G D +V DLQHGL+ R  LE+AIG VR     +VR  ++   AIG+ALDAGA G+IVP+VE+AE+A   V AA+YPP G RS GG+R + D  A V        VA MIET  G+ENAAAIAAVPG+D++
Sbjct:   20 RLESGDSLACAWLAMGSPALVEAAAHAGPDLLVLDLQHGLFDRRDLEAAIGAVRGDVPVLVRVAENRPLAIGTALDAGAEGVIVPLVESAEEAAAAVSAARYPPHGIRSGGGVRPLADFAAYVAGCARDTLVAVMIETKAGLENAAAIAAVPGVDLV 176          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57594.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4R6WWJ2_9PROT2.430e-5660.372-keto-3-deoxy-L-rhamnonate aldolase RhmA n=2 Tax=... [more]
A0A5C7NS96_9PROT1.170e-5257.93SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
UPI000699840C3.960e-4853.05aldolase/citrate lyase family protein n=1 Tax=Sphi... [more]
UPI001BD08ACD9.070e-4150.96aldolase/citrate lyase family protein n=1 Tax=Chel... [more]
A0A7S8II29_9HYPH1.550e-4049.04Aldolase n=1 Tax=Mesorhizobium sp. NBSH29 TaxID=26... [more]
A0A2G4YVR6_9PROT1.760e-4052.00HpcH_HpaI domain-containing protein n=1 Tax=Paremc... [more]
UPI001BCE66774.850e-4048.78aldolase/citrate lyase family protein n=1 Tax=Chel... [more]
A0A2V3TYZ1_9HYPH6.800e-4050.962-dehydro-3-deoxyglucarate aldolase n=1 Tax=Chelat... [more]
UPI00109DA21B2.530e-3946.63aldolase/citrate lyase family protein n=1 Tax=Sphi... [more]
UPI00166C1E8E6.540e-3949.04aldolase/citrate lyase family protein n=1 Tax=Sali... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57594contigP-wetherbeei_contig57594:17..508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1380394.JADL01000003_gene4848
PFAMsadh_short
Model size492
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.29e-39
EggNOG OGsCOG1028@1|root,COG3836@1|root,COG1028@2|Bacteria,COG3836@2|Bacteria,1QVCC@1224|Proteobacteria,2TTBY@28211|Alphaproteobacteria
DescriptionEnoyl-(Acyl carrier protein) reductase
Cds size492
COG categoryIQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186853.9511008-CDS-P-wetherbeei_contig57594:16..5081683186853.9511008-CDS-P-wetherbeei_contig57594:16..508Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57594 17..508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57594.1.1prot_P-wetherbeei_contig57594.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57594 17..508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57594.1.1

>prot_P-wetherbeei_contig57594.1.1 ID=prot_P-wetherbeei_contig57594.1.1|Name=mRNA_P-wetherbeei_contig57594.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
MENPVLNKLRAGGCVGAMWTTLGAPVIAELMVQDGADAIVFDLQHGLWTR
PLLESAIGMVRDKAVPMVRTQDDSYFAIGSALDAGALGIIVPVVETAEQA
RKIVEAAKYPPQGKRSSGGIRSVIDAKALVPKTNDLIFVAAMIETTVGVE
NAAAIAAVPGIDML
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mRNA from alignment at P-wetherbeei_contig57594:17..508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57594.1.1 ID=mRNA_P-wetherbeei_contig57594.1.1|Name=mRNA_P-wetherbeei_contig57594.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig57594:17..508+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAAATCCGGTCCTGAACAAGCTGCGCGCGGGCGGCTGCGTCGGCGC GATGTGGACGACCTTGGGCGCGCCGGTCATCGCCGAGTTGATGGTACAGG ATGGCGCCGATGCCATCGTGTTCGACCTGCAGCATGGCTTGTGGACGCGG CCGCTGCTGGAATCCGCCATCGGCATGGTGCGCGACAAGGCGGTGCCGAT GGTCCGCACCCAGGACGATTCCTATTTCGCCATCGGCAGTGCCTTGGATG CCGGTGCGCTCGGCATCATCGTGCCGGTGGTGGAGACGGCGGAGCAGGCA AGGAAGATTGTCGAGGCCGCGAAGTATCCGCCGCAGGGCAAGCGGTCGTC CGGCGGCATCCGCTCGGTCATCGACGCCAAGGCGCTGGTGCCCAAGACCA ATGATCTGATCTTTGTCGCGGCGATGATCGAGACGACGGTGGGCGTCGAG AACGCCGCGGCCATTGCCGCGGTGCCCGGCATCGACATGCTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57594:17..508+

>mRNA_P-wetherbeei_contig57594.1.1 ID=mRNA_P-wetherbeei_contig57594.1.1|Name=mRNA_P-wetherbeei_contig57594.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig57594:17..508+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAAATCCGGTCCTGAACAAGCTGCGCGCGGGCGGCTGCGTCGGCGC
GATGTGGACGACCTTGGGCGCGCCGGTCATCGCCGAGTTGATGGTACAGG
ATGGCGCCGATGCCATCGTGTTCGACCTGCAGCATGGCTTGTGGACGCGG
CCGCTGCTGGAATCCGCCATCGGCATGGTGCGCGACAAGGCGGTGCCGAT
GGTCCGCACCCAGGACGATTCCTATTTCGCCATCGGCAGTGCCTTGGATG
CCGGTGCGCTCGGCATCATCGTGCCGGTGGTGGAGACGGCGGAGCAGGCA
AGGAAGATTGTCGAGGCCGCGAAGTATCCGCCGCAGGGCAAGCGGTCGTC
CGGCGGCATCCGCTCGGTCATCGACGCCAAGGCGCTGGTGCCCAAGACCA
ATGATCTGATCTTTGTCGCGGCGATGATCGAGACGACGGTGGGCGTCGAG
AACGCCGCGGCCATTGCCGCGGTGCCCGGCATCGACATGCTA
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