mRNA_P-wetherbeei_contig57579.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57579.1.1
Unique NamemRNA_P-wetherbeei_contig57579.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57579.1.1 vs. uniprot
Match: A0A1F8VKE2_9BURK (Integrase catalytic domain-containing protein n=1 Tax=Curvibacter sp. GWA2_64_110 TaxID=1797747 RepID=A0A1F8VKE2_9BURK)

HSP 1 Score: 212 bits (540), Expect = 2.040e-62
Identity = 100/168 (59.52%), Postives = 129/168 (76.79%), Query Frame = 1
Query:    4 GLIRFVVDIYPFELNSRRLHTSFEIFKEGIGLLPPPAFPSSFQQLDMIAAMSKMITVAQGGVDMVGLTYSSNELLDVKKDVGAKFRTFVKWNPDDLSQVFMQHPLTKGWLTIPSIRVDYTGGLSWIQHRLIRQHARQQYIEGGTYERLLRARQELYEMWMNPIARRNR 507
            GL++FV D+YPFELN R+L T FE F+E    L PP F  S  QLD+IAAM K +TV  GGV++ G++YSS+++L +KK+VG  F+T VKWNPDDLS +++QHPL+K WL +PS R DYT GLSW QH LIR+HAR ++++GG  +RLL ARQEL+E WMN IAR NR
Sbjct:  423 GLVKFVTDVYPFELNERKLCTPFEAFQESFNTLRPPTFQWSMDQLDLIAAMRKDLTVGAGGVELPGISYSSSDVLVLKKEVGHTFKTGVKWNPDDLSFIYLQHPLSKDWLPVPSTRPDYTDGLSWNQHLLIRKHARDKHVQGGGVDRLLLARQELHESWMNGIARSNR 590          
BLAST of mRNA_P-wetherbeei_contig57579.1.1 vs. uniprot
Match: UPI0015D298EC (DDE-type integrase/transposase/recombinase n=1 Tax=Rhodoferax sp. BLA1 TaxID=2576062 RepID=UPI0015D298EC)

HSP 1 Score: 210 bits (534), Expect = 8.750e-62
Identity = 98/169 (57.99%), Postives = 130/169 (76.92%), Query Frame = 1
Query:    1 KGLIRFVVDIYPFELNSRRLHTSFEIFKEGIGLLPPPAFPSSFQQLDMIAAMSKMITVAQGGVDMVGLTYSSNELLDVKKDVGAKFRTFVKWNPDDLSQVFMQHPLTKGWLTIPSIRVDYTGGLSWIQHRLIRQHARQQYIEGGTYERLLRARQELYEMWMNPIARRNR 507
            +GLI+FVVD+YPFELN R+L T F  F++    L PP F  S  QLD+IAAM K +TV  GGV + G++YSS+ +L +KK+VG  F+T VKWNPD+LS +++QHP+ K WL +PS+R DYT GLSW QHRLIR+HAR++++ GG  ++LL ARQEL+E+WMN IAR NR
Sbjct:  389 RGLIKFVVDVYPFELNERKLVTPFAAFQDSFNSLRPPTFQWSMDQLDLIAAMRKDLTVGPGGVSLPGISYSSSAVLAMKKEVGHTFKTGVKWNPDNLSFIYLQHPVNKDWLPVPSLRPDYTNGLSWNQHRLIRKHAREKHVRGGGVDQLLLARQELHELWMNGIARSNR 557          
BLAST of mRNA_P-wetherbeei_contig57579.1.1 vs. uniprot
Match: UPI0009FD43C4 (DDE-type integrase/transposase/recombinase n=1 Tax=Curvibacter lanceolatus TaxID=86182 RepID=UPI0009FD43C4)

HSP 1 Score: 209 bits (533), Expect = 2.250e-61
Identity = 101/169 (59.76%), Postives = 132/169 (78.11%), Query Frame = 1
Query:    4 GLIRFVVDIYPFELNSRRLHTSFEIFKEGIGLLPPPAFPSSFQQLDMIAAMSKMITVAQGGVDMVGLTYSSNELLDVKKDVGAKFRTFVKWNPDDLSQVFMQHPLTKGWLTIPSIRVDYTGGLSWIQHRLIRQHARQQYIEGGTYERLLR-ARQELYEMWMNPIARRNR 507
            GL+RFVVD+YPFE NSR L  +F+ FK G+  LPPP FP+S  QLD++ A SK +TV  GGV+M+GL+YSS +L  +KK VG+KFRT VKW+PDDL  V++Q+P  K WLT+PS+  +YT GLSWIQH +IR+HAR++ IEGG YE  LR AR +++E+WMNP+AR NR
Sbjct:  427 GLVRFVVDVYPFEDNSRTLEMAFDRFKAGLDELPPPVFPTSLDQLDLVLAQSKELTVGPGGVEMLGLSYSSPDLALMKKVVGSKFRTLVKWDPDDLGNVYVQNPKDKSWLTVPSLMPEYTNGLSWIQHNIIRKHAREKRIEGG-YEVALRCARLDIHELWMNPLARINR 594          
BLAST of mRNA_P-wetherbeei_contig57579.1.1 vs. uniprot
Match: A0A4R3VL13_PELSC (Mu transposase-like protein n=2 Tax=Pelomonas saccharophila TaxID=304 RepID=A0A4R3VL13_PELSC)

HSP 1 Score: 154 bits (389), Expect = 3.120e-42
Identity = 70/165 (42.42%), Postives = 113/165 (68.48%), Query Frame = 1
Query:    1 KGLIRFVVDIYPFELNSRRLHTSFEIFKEGIGLLPPPAFPSSFQQLDMIAAMSKMITVAQGGVDMVGLTYSSNELLDVKKDVGAKFRTFVKWNPDDLSQVFMQHPLTKGWLTIPSIRVDYTGGLSWIQHRLIRQHARQQYIEGGTYERLLRARQELYEMWMNPIA 495
            +GL++F VD++PF++N R+L   +++F EG+   P   FP   +++ + +A+SK  TV QGGV++ GL Y + ELL +++  G +F+T+VKW+PDD+S++++Q P+ K W++ P    DY   LSW QH LIR+ ARQ+  + G+YE L RAR  L++ WM  +A
Sbjct:  177 RGLVQFAVDVHPFKVNERKLAKPYDLFLEGLERTPAACFPHDMERIRLASALSKPKTVDQGGVELHGLPYGAGELLPMRERYGKRFKTWVKWDPDDMSRLWVQDPVDKHWVSSPCRWTDYAKDLSWNQHLLIRKFARQELKKNGSYEYLERARLRLHDHWMEAVA 341          
BLAST of mRNA_P-wetherbeei_contig57579.1.1 vs. uniprot
Match: A0A5C7VEI6_9BURK (Transposase n=1 Tax=Pelomonas sp. TaxID=1909303 RepID=A0A5C7VEI6_9BURK)

HSP 1 Score: 158 bits (399), Expect = 4.010e-42
Identity = 73/169 (43.20%), Postives = 112/169 (66.27%), Query Frame = 1
Query:    1 KGLIRFVVDIYPFELNSRRLHTSFEIFKEGIGLLPPPAFPSSFQQLDMIAAMSKMITVAQGGVDMVGLTYSSNELLDVKKDVGAKFRTFVKWNPDDLSQVFMQHPLTKGWLTIPSIRVDYTGGLSWIQHRLIRQHARQQYIEGGTYERLLRARQELYEMWMNPIARRNR 507
            +GL+ +VVD +PF++N R+L   F++ +EG+  +PP  FP   ++L M++A+SK +TV QGGVD+ GL +   ELL ++  +G KF+ ++KW+PDD+SQV++Q P  + W+  P    DY  GLSW QH  IR+ ARQ++   G YE L RAR  L+E W   ++ + R
Sbjct:  428 RGLVMYVVDYHPFQINERKLARPFDLMQEGLVRVPPARFPHDMERLRMVSALSKQLTVHQGGVDLHGLPFGGAELLPMRGALGEKFKAWIKWDPDDMSQVWVQDPGNEQWVASPCRWGDYANGLSWNQHLQIRKFARQEFKNNGAYEYLERARLRLHEHWQESVSWKTR 596          
BLAST of mRNA_P-wetherbeei_contig57579.1.1 vs. uniprot
Match: UPI001C0DB9CF (DDE-type integrase/transposase/recombinase n=1 Tax=Polynucleobacter sp. Fuers-14 TaxID=1758364 RepID=UPI001C0DB9CF)

HSP 1 Score: 156 bits (395), Expect = 1.490e-41
Identity = 76/159 (47.80%), Postives = 106/159 (66.67%), Query Frame = 1
Query:    7 LIRFVVDIYPFELNSRRLHTSFEIFKEGIGLLPPPAFPSSFQQLDMIAAMSKMITVAQGGVDMVGLTYSSNELLDVKKDVGAKFRTFVKWNPDDLSQVFMQHPLTKG-WLTIPSIRVDYTGGLSWIQHRLIRQHARQQYIEGGTYERLLRARQELYEMW 480
            ++++ VDI+PF +N  +L  SF++F E +  +PPP F  S + LD IAAMSK++ V  GG+++ GL+YS  EL  +KK+VG KF+T VKW+PDDL  V +QHPL    WL +PS    YT  LSW+QHR IR +AR+        E+L RAR EL ++W
Sbjct:  429 ILKWAVDIHPFHINKHKLSRSFDLFGESLDQIPPPKFLGSLETLDRIAAMSKVLMVNSGGIELAGLSYSCPELFRMKKEVGPKFKTLVKWDPDDLVMVHVQHPLDHSQWLAVPSRNPHYTNQLSWVQHRNIRAYAREHLKNIRGQEQLDRARSELEDLW 587          
BLAST of mRNA_P-wetherbeei_contig57579.1.1 vs. uniprot
Match: UPI0014950749 (Mu transposase C-terminal domain-containing protein n=1 Tax=Paucibacter aquatile TaxID=2070761 RepID=UPI0014950749)

HSP 1 Score: 156 bits (394), Expect = 2.030e-41
Identity = 71/169 (42.01%), Postives = 113/169 (66.86%), Query Frame = 1
Query:    1 KGLIRFVVDIYPFELNSRRLHTSFEIFKEGIGLLPPPAFPSSFQQLDMIAAMSKMITVAQGGVDMVGLTYSSNELLDVKKDVGAKFRTFVKWNPDDLSQVFMQHPLTKGWLTIPSIRVDYTGGLSWIQHRLIRQHARQQYIEGGTYERLLRARQELYEMWMNPIARRNR 507
            +GL+ +VVD +PF++N R+L   +++ +EG+  +PP  FP   ++L M++AMSK +TV QGGV++ GL Y   ELL +++ +G +F+T+VKW+PDD+SQV++Q P ++ W+       +Y  GLSW QH  IR+ AR +    G YE L RAR  L+E W   ++ ++R
Sbjct:  428 RGLVMYVVDYHPFQVNERKLARPYDLMQEGLTRVPPARFPHDLERLRMVSAMSKQLTVHQGGVELHGLPYGGPELLSMRRALGTRFKTWVKWDPDDMSQVWIQDPKSQSWVASSCRWAEYANGLSWNQHLQIRKFARLELKSSGAYEYLERARLRLHEHWQESVSWKSR 596          
BLAST of mRNA_P-wetherbeei_contig57579.1.1 vs. uniprot
Match: UPI00082C4262 (DDE-type integrase/transposase/recombinase n=2 Tax=Polynucleobacter TaxID=44013 RepID=UPI00082C4262)

HSP 1 Score: 151 bits (381), Expect = 1.380e-39
Identity = 72/168 (42.86%), Postives = 112/168 (66.67%), Query Frame = 1
Query:    7 LIRFVVDIYPFELNSRRLHTSFEIFKEGIGLLPPPAFPSSFQQLDMIAAMSKMITVAQGGVDMVGLTYSSNELLDVKKDVGAKFRTFVKWNPDDLSQVFMQHPLTKG-WLTIPSIRVDYTGGLSWIQHRLIRQHARQQYIEGGTYERLLRARQELYEMWMNPIARRNR 507
            ++++ VDI+PF +N  +L  SF++F E +  +PPP F  S + L+ IAAMS+ +TV  GG++++GL+YS  EL  +KK+VG KF+T VKW+PDDL  +++QHPL    W+ +PS    Y   LS++QHR IR  AR+ + E    E+L  AR E+ EMW + + + ++
Sbjct:  429 ILKWAVDIHPFHINKHKLSRSFDLFGESLEQIPPPRFLGSLEALNRIAAMSRHLTVNSGGIELMGLSYSCPELFQMKKEVGPKFKTLVKWDPDDLHMLYVQHPLDHANWVPVPSRTPHYANQLSYVQHRNIRAFAREHFKEIRGQEQLDMARAEMQEMWQSRMIKEHK 596          
BLAST of mRNA_P-wetherbeei_contig57579.1.1 vs. uniprot
Match: UPI000A027380 (Mu transposase C-terminal domain-containing protein n=1 Tax=Thauera butanivorans TaxID=86174 RepID=UPI000A027380)

HSP 1 Score: 147 bits (371), Expect = 3.420e-38
Identity = 66/162 (40.74%), Postives = 105/162 (64.81%), Query Frame = 1
Query:    1 KGLIRFVVDIYPFELNSRRLHTSFEIFKEGIGLLPPPAFPSSFQQLDMIAAMSKMITVAQGGVDMVGLTYSSNELLDVKKDVGAKFRTFVKWNPDDLSQVFMQHPLTKGWLTIPSIRVDYTGGLSWIQHRLIRQHARQQYIEGGTYERLLRARQELYEMWMN 486
            KGL+++ VD++PF ++ R+L   F++  +GI   PP ++  +F  + M  A+SK +TV+QGGV++ G+ + S EL  +++ VG  FRT VKW+PDD+ Q+++QHP+TK W+  PS    YT GLSW QH LIR+  R+Q       E  + +   ++E WM+
Sbjct:  427 KGLVQYFVDVHPFRIHERKLARPFDLMSDGIEKCPPASYLPNFDAVRMATAISKTLTVSQGGVEIRGIPFGSAELSPMRRAVGENFRTLVKWDPDDIDQIYVQHPITKEWICSPSRWPQYTQGLSWNQHLLIRKFLRKQLKAKNAEENYITSAMRMHEFWMD 588          
BLAST of mRNA_P-wetherbeei_contig57579.1.1 vs. uniprot
Match: A0A0Q6WLZ9_9BURK (Integrase catalytic domain-containing protein n=2 Tax=Pelomonas sp. Root1237 TaxID=1736434 RepID=A0A0Q6WLZ9_9BURK)

HSP 1 Score: 145 bits (366), Expect = 8.480e-38
Identity = 72/169 (42.60%), Postives = 105/169 (62.13%), Query Frame = 1
Query:    1 KGLIRFVVDIYPFELNSRRLHTSFEIFKEGIGLLPPPAFPSSFQQLDMIAAMSKMITVAQGGVDMVGLTYSSNELLDVKKDVGAKFRTFVKWNPDDLSQVFMQHPLTKGWLTIPSIRVDYTGGLSWIQHRLIRQHARQQYIEGGTYERLLRARQELYEMWMNPIARRNR 507
            +G+ +FVV++YPF++N R+L   F++F EGI   PP  FP     L  I+AM +++TV  GGV++ GL +   ELLD+++  G  F+T VKW+PDDLS  ++Q P TK ++  P     Y  GLSW QH LIR+ AR++    G  E L +AR  L+  WM  +A + R
Sbjct:  346 RGIAQFVVEVYPFQINQRKLARPFDLFTEGIERRPPVHFPPDIDALRRISAMRRVLTVGPGGVELHGLPFGGPELLDMRRRYGKSFKTLVKWDPDDLSHAWIQDPETKEFVVSPCRWHHYAHGLSWNQHLLIRRFAREELKASGAIEYLEQARLRLHSHWMESVAWKTR 514          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57579.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F8VKE2_9BURK2.040e-6259.52Integrase catalytic domain-containing protein n=1 ... [more]
UPI0015D298EC8.750e-6257.99DDE-type integrase/transposase/recombinase n=1 Tax... [more]
UPI0009FD43C42.250e-6159.76DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A4R3VL13_PELSC3.120e-4242.42Mu transposase-like protein n=2 Tax=Pelomonas sacc... [more]
A0A5C7VEI6_9BURK4.010e-4243.20Transposase n=1 Tax=Pelomonas sp. TaxID=1909303 Re... [more]
UPI001C0DB9CF1.490e-4147.80DDE-type integrase/transposase/recombinase n=1 Tax... [more]
UPI00149507492.030e-4142.01Mu transposase C-terminal domain-containing protei... [more]
UPI00082C42621.380e-3942.86DDE-type integrase/transposase/recombinase n=2 Tax... [more]
UPI000A0273803.420e-3840.74Mu transposase C-terminal domain-containing protei... [more]
A0A0Q6WLZ9_9BURK8.480e-3842.60Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57579contigP-wetherbeei_contig57579:3..509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog398578.Daci_1702
Preferred nametniA
PFAMsHTH_28,HTH_Tnp_Mu_2,Mu-transpos_C,rve
Model size507
Max annot lvl28216|Betaproteobacteria
KEGG koko:K07497
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.42e-33
EggNOG OGsCOG2801@1|root,COG2801@2|Bacteria,1MXCK@1224|Proteobacteria,2VK4Q@28216|Betaproteobacteria,4AFQG@80864|Comamonadaceae
DescriptionPFAM Integrase, catalytic
Cds size507
COG categoryL
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186853.7519135-CDS-P-wetherbeei_contig57579:2..5091683186853.7519135-CDS-P-wetherbeei_contig57579:2..509Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57579 3..509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57579.1.1prot_P-wetherbeei_contig57579.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57579 3..509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57579.1.1

>prot_P-wetherbeei_contig57579.1.1 ID=prot_P-wetherbeei_contig57579.1.1|Name=mRNA_P-wetherbeei_contig57579.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
KGLIRFVVDIYPFELNSRRLHTSFEIFKEGIGLLPPPAFPSSFQQLDMIA
AMSKMITVAQGGVDMVGLTYSSNELLDVKKDVGAKFRTFVKWNPDDLSQV
FMQHPLTKGWLTIPSIRVDYTGGLSWIQHRLIRQHARQQYIEGGTYERLL
RARQELYEMWMNPIARRNR
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mRNA from alignment at P-wetherbeei_contig57579:3..509-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57579.1.1 ID=mRNA_P-wetherbeei_contig57579.1.1|Name=mRNA_P-wetherbeei_contig57579.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig57579:3..509- (Phaeothamnion wetherbeei SAG_119_79)
AAAGGGCTCATTCGGTTCGTTGTGGACATCTACCCGTTTGAACTCAACAG CAGAAGGCTGCACACGTCGTTCGAGATTTTCAAGGAAGGGATTGGTCTGC TGCCTCCGCCAGCTTTCCCCTCATCCTTTCAGCAGCTCGACATGATTGCG GCCATGAGCAAGATGATTACTGTGGCGCAAGGCGGCGTCGATATGGTGGG CCTGACGTATTCGTCGAATGAACTCCTCGACGTCAAGAAGGACGTCGGGG CAAAGTTCAGGACGTTTGTGAAATGGAATCCCGATGACCTCTCACAGGTA TTTATGCAGCATCCGCTTACCAAAGGCTGGTTGACTATCCCAAGCATCCG CGTGGACTACACGGGGGGCTTGTCTTGGATCCAGCATCGCCTGATTCGGC AACACGCCCGTCAGCAATACATCGAGGGTGGCACCTACGAACGCCTTCTG CGCGCCCGACAGGAGCTGTACGAGATGTGGATGAACCCCATCGCTCGTCG CAACCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57579:3..509-

>mRNA_P-wetherbeei_contig57579.1.1 ID=mRNA_P-wetherbeei_contig57579.1.1|Name=mRNA_P-wetherbeei_contig57579.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig57579:3..509- (Phaeothamnion wetherbeei SAG_119_79)
AAAGGGCTCATTCGGTTCGTTGTGGACATCTACCCGTTTGAACTCAACAG
CAGAAGGCTGCACACGTCGTTCGAGATTTTCAAGGAAGGGATTGGTCTGC
TGCCTCCGCCAGCTTTCCCCTCATCCTTTCAGCAGCTCGACATGATTGCG
GCCATGAGCAAGATGATTACTGTGGCGCAAGGCGGCGTCGATATGGTGGG
CCTGACGTATTCGTCGAATGAACTCCTCGACGTCAAGAAGGACGTCGGGG
CAAAGTTCAGGACGTTTGTGAAATGGAATCCCGATGACCTCTCACAGGTA
TTTATGCAGCATCCGCTTACCAAAGGCTGGTTGACTATCCCAAGCATCCG
CGTGGACTACACGGGGGGCTTGTCTTGGATCCAGCATCGCCTGATTCGGC
AACACGCCCGTCAGCAATACATCGAGGGTGGCACCTACGAACGCCTTCTG
CGCGCCCGACAGGAGCTGTACGAGATGTGGATGAACCCCATCGCTCGTCG
CAACCGA
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