mRNA_P-wetherbeei_contig57566.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57566.2.1
Unique NamemRNA_P-wetherbeei_contig57566.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57566.2.1 vs. uniprot
Match: A0A7R7CBF8_9HYPH (Uncharacterized protein n=1 Tax=Mesorhizobium sp. L-8-3 TaxID=2744522 RepID=A0A7R7CBF8_9HYPH)

HSP 1 Score: 65.9 bits (159), Expect = 6.430e-12
Identity = 32/47 (68.09%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   49 DSERRKALGDWGESKAYELLTRAVSGFSNVRDINAETANHPFGDLYA 189
            + ER K LG WGE KA  LL RA  GFS VRD+NAET NHPFGD+YA
Sbjct:    4 ERERTKLLGIWGEHKALALLARA--GFSTVRDVNAETFNHPFGDIYA 48
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57566.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7R7CBF8_9HYPH6.430e-1268.09Uncharacterized protein n=1 Tax=Mesorhizobium sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57566contigP-wetherbeei_contig57566:320..508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size189
Hectar predicted targeting categoryother localisation
Exons1
Cds size183
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186853.5001647-UTR-P-wetherbeei_contig57566:319..3251683186853.5001647-UTR-P-wetherbeei_contig57566:319..325Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig57566 320..325 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186853.5102282-CDS-P-wetherbeei_contig57566:325..5081683186853.5102282-CDS-P-wetherbeei_contig57566:325..508Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57566 326..508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57566.2.1prot_P-wetherbeei_contig57566.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57566 326..508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57566.2.1

>prot_P-wetherbeei_contig57566.2.1 ID=prot_P-wetherbeei_contig57566.2.1|Name=mRNA_P-wetherbeei_contig57566.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=61bp
MMRRGSIVMGEAMRDSERRKALGDWGESKAYELLTRAVSGFSNVRDINAE
TANHPFGDLYA
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mRNA from alignment at P-wetherbeei_contig57566:320..508+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57566.2.1 ID=mRNA_P-wetherbeei_contig57566.2.1|Name=mRNA_P-wetherbeei_contig57566.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig57566:320..508+ (Phaeothamnion wetherbeei SAG_119_79)
AGTGCTATGATGCGCCGTGGCAGCATTGTCATGGGGGAGGCGATGAGGGA
CAGCGAAAGAAGAAAGGCGCTCGGTGATTGGGGCGAATCCAAAGCCTATG
AGCTACTGACCCGTGCAGTTTCTGGGTTTAGCAACGTACGGGACATCAAC
GCTGAGACTGCAAACCATCCGTTCGGTGATCTTTACGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57566:320..508+

>mRNA_P-wetherbeei_contig57566.2.1 ID=mRNA_P-wetherbeei_contig57566.2.1|Name=mRNA_P-wetherbeei_contig57566.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig57566:320..508+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGCGCCGTGGCAGCATTGTCATGGGGGAGGCGATGAGGGACAGCGA
AAGAAGAAAGGCGCTCGGTGATTGGGGCGAATCCAAAGCCTATGAGCTAC
TGACCCGTGCAGTTTCTGGGTTTAGCAACGTACGGGACATCAACGCTGAG
ACTGCAAACCATCCGTTCGGTGATCTTTACGCC
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