mRNA_P-wetherbeei_contig57548.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57548.1.1
Unique NamemRNA_P-wetherbeei_contig57548.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57548.1.1 vs. uniprot
Match: A0A6J4UTP9_9CHLR (PMT_2 domain-containing protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4UTP9_9CHLR)

HSP 1 Score: 83.2 bits (204), Expect = 8.630e-17
Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = 1
Query:    7 YVGLFVLPIVLAALPFIAGSRPPRTRLGIAFVVAWAAILVAGLLVFAGRDHYFPYIPQFLGVQGAGPTDLIGGRAPLIEQP 249
            Y+GLFVLP+ L++   +   R PRTR G+ F + W+ ILV G L+F       PYI QF G+ G GPTD++GGR PL   P
Sbjct:  279 YIGLFVLPLTLSSFVSLQRWRLPRTRSGVIFFIVWSTILVLGALIFFNEGRVMPYIQQFWGLHGVGPTDIVGGR-PLAISP 358          
BLAST of mRNA_P-wetherbeei_contig57548.1.1 vs. uniprot
Match: A0A6J4VHX5_9CHLR (PMT_2 domain-containing protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4VHX5_9CHLR)

HSP 1 Score: 82.8 bits (203), Expect = 1.180e-16
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    7 YVGLFVLPIVLAALPFIAGSRPPRTRLGIAFVVAWAAILVAGLLVFAGRDHYFPYIPQFLGVQGAGPTDLIGGRAPLIE 243
            Y+GLFVLP+ L++       R PRTR+G AF++ W+AI+  G  VF  +    PYI QFLG  G GPTD++GGR   I 
Sbjct:  279 YIGLFVLPLTLSSFVSFQRWRLPRTRIGGAFLIVWSAIIGVGAFVFFDQGRVMPYIQQFLGFHGVGPTDIVGGRPSAIS 357          
BLAST of mRNA_P-wetherbeei_contig57548.1.1 vs. uniprot
Match: A0A7V8VWB8_9CHLR (Glycosyltransferase family 39 protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8VWB8_9CHLR)

HSP 1 Score: 72.0 bits (175), Expect = 7.190e-13
Identity = 36/81 (44.44%), Postives = 47/81 (58.02%), Query Frame = 1
Query:    7 YVGLFVLPIVLAALPFIAGSRPPRTRLGIAFVVAWAAILVAGLLVFAGRDHYFPYIPQFLGVQGAGPTDLIGGRAPLIEQP 249
            Y+GLF LPI L+    +   R P +  G  F++ W  I+V G ++F       PYI QFLG+ G GPTDL+GGR PL   P
Sbjct:  325 YIGLFSLPITLSTFVSLDRWRLPLSVGGRVFLLVWTGIIVTGAVIFFSEGRVMPYIQQFLGLHGVGPTDLVGGR-PLALSP 404          
BLAST of mRNA_P-wetherbeei_contig57548.1.1 vs. uniprot
Match: A0A6J4VXF7_9CHLR (Uncharacterized protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4VXF7_9CHLR)

HSP 1 Score: 72.0 bits (175), Expect = 7.330e-13
Identity = 41/85 (48.24%), Postives = 50/85 (58.82%), Query Frame = 1
Query:    4 MYVGLFVLPIVLAALPFIAGSRPPRTRLGIAFVVAWAAILVAGLLVFA--GRD----HYFPYIPQFLGVQGAGPTDLIGGRAPLI 240
            MYVGLFVLPI  AAL  +       + LG   V  WA +L+ GL+ FA  GRD       PY+PQ+LG  G GP+DL GGR  L+
Sbjct:  311 MYVGLFVLPIAAAALVGLGRLLDAPSALGWGIVFGWACVLIVGLMAFAAYGRDIPPMPRMPYVPQYLGPTGLGPSDLHGGRRWLV 395          
BLAST of mRNA_P-wetherbeei_contig57548.1.1 vs. uniprot
Match: A0A7V9VA16_9CHLR (Glycosyltransferase family 39 protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VA16_9CHLR)

HSP 1 Score: 68.2 bits (165), Expect = 1.650e-11
Identity = 45/89 (50.56%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 MMYVGLFVLPIVLAALPFIAGSRP--PRTRL-GIAFVVAWAAILVAGLLVFAGRDHYF-----PYIPQFLGVQGAGPTDLIGGRAPLIE 243
            M+Y+G  VLP+VL AL   AG+R    R RL G  F+ AW A+LVAGL  FAG    F     PY+ QF+G+ G GP+DL GGR  L E
Sbjct:  279 MVYLGFIVLPLVLGAL---AGARHLIRRPRLPGAVFLGAWLAVLVAGLAWFAGGPAGFGPLKMPYVSQFVGLHGLGPSDLWGGRPWLNE 364          
BLAST of mRNA_P-wetherbeei_contig57548.1.1 vs. uniprot
Match: A0A7W0TZC7_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0TZC7_9CHLR)

HSP 1 Score: 63.9 bits (154), Expect = 4.890e-10
Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 1
Query:    7 YVGLFVLPIVLAALPFIAGSRPPRTRLGIAFVVAWAAILVAGLLVFAGRDHYFPYIPQFLGVQGAGPTDLIGGRAPLIE 243
            Y+GLF LP+V AALP +     P    G+  ++AW A++V G           PYI QF G  G GP D++G R  L++
Sbjct:  311 YLGLFTLPVVAAALPALRRLLAPLAPSGLLVLLAWQAVVVGGAAAAWASGARMPYIGQFFGSGGIGPPDVLGSRPTLLD 389          
BLAST of mRNA_P-wetherbeei_contig57548.1.1 vs. uniprot
Match: A0A7W0QQ11_9CHLR (Glycosyltransferase family 39 protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0QQ11_9CHLR)

HSP 1 Score: 63.5 bits (153), Expect = 7.000e-10
Identity = 36/88 (40.91%), Postives = 49/88 (55.68%), Query Frame = 1
Query:    4 MYVGLFVLPIVLAALPFIAGSRPPRTRLGIAFVVAWA--------AILVAGLLVFAGRDHYFPYIPQFLGVQGAGPTDLIGGRAPLIE 243
            MY+GLF+LP+ +A LP   G+R    R    F  AW          +L+ G++VF       PYIPQFLG  G GP+D+ GGR  ++E
Sbjct:  330 MYLGLFLLPLTVALLP---GTRQTAQRF---FASAWGYGTFLVSILLLMFGVVVFTSAGRLMPYIPQFLGSGGFGPSDVPGGRERVVE 411          
BLAST of mRNA_P-wetherbeei_contig57548.1.1 vs. uniprot
Match: A0A7V9N6Y2_9CHLR (Glycosyltransferase family 39 protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9N6Y2_9CHLR)

HSP 1 Score: 63.5 bits (153), Expect = 7.030e-10
Identity = 37/86 (43.02%), Postives = 47/86 (54.65%), Query Frame = 1
Query:    1 MMYVGLFVLPIVLAALPFIAG---SRPPRTRLGIAFVVAWAAILVAGLLVFAGRDHYFPYIPQFLGVQGAGPTDLIGGRAPLIEQP 249
            +MY+GLF LPI+ AALPF  G     PPR   G     AW A+L+ G+     R    PYI QF G  G G  D++G R P++  P
Sbjct:  329 LMYLGLFTLPIMAAALPFARGLIRGIPPR---GWVLFAAWQAVLLVGVTALWARGATMPYIAQFFGGGGLGAPDVLGSR-PIVLGP 410          
BLAST of mRNA_P-wetherbeei_contig57548.1.1 vs. uniprot
Match: A0A7W1DWG7_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W1DWG7_9CHLR)

HSP 1 Score: 60.5 bits (145), Expect = 8.080e-9
Identity = 33/86 (38.37%), Postives = 46/86 (53.49%), Query Frame = 1
Query:    1 MMYVGLFVLPIVLAALPFIAGSRPPRTRLGIAFVVAWAAILVAGLLVFAGRD------HYFPYIPQFLGVQGAGPTDLIGGRAPLI 240
            M Y+GLFVLPIV+A +  +      R+ LG+    AW   ++ G+  F             PYIPQ++G  G GP DL+GGR  +I
Sbjct:   74 MAYIGLFVLPIVVATIFSLGRLVRIRSPLGVLLFTAWTVAVITGVRYFDALGVAPPPMPRMPYIPQYVGSSGLGPADLMGGRQWII 159          
BLAST of mRNA_P-wetherbeei_contig57548.1.1 vs. uniprot
Match: A0A6J4UTC6_9CHLR (Uncharacterized protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4UTC6_9CHLR)

HSP 1 Score: 54.3 bits (129), Expect = 1.270e-6
Identity = 31/78 (39.74%), Postives = 39/78 (50.00%), Query Frame = 1
Query:    4 MYVGLFVLPIVLAALPFIAGSRPPRTRLGIAFVVAWAAILVAGLLVFAGRDHYFPYIPQFLGVQGAGPTDLIGGRAPL 237
            MY+GLFVLPI +AA+P +       +  G  F   W  +L+ GL  F  +    P IP FLG  G G  DL   R  L
Sbjct:  330 MYLGLFVLPIAVAAVPRLGDMVRGVSVRGWLFFAGWQGLLLVGLGAFWAQGRRMPLIPHFLGRSGPGSGDLRAARPHL 407          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57548.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6J4UTP9_9CHLR8.630e-1748.15PMT_2 domain-containing protein n=1 Tax=uncultured... [more]
A0A6J4VHX5_9CHLR1.180e-1648.10PMT_2 domain-containing protein n=1 Tax=uncultured... [more]
A0A7V8VWB8_9CHLR7.190e-1344.44Glycosyltransferase family 39 protein (Fragment) n... [more]
A0A6J4VXF7_9CHLR7.330e-1348.24Uncharacterized protein n=1 Tax=uncultured Thermom... [more]
A0A7V9VA16_9CHLR1.650e-1150.56Glycosyltransferase family 39 protein n=1 Tax=Chlo... [more]
A0A7W0TZC7_9CHLR4.890e-1039.24Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
A0A7W0QQ11_9CHLR7.000e-1040.91Glycosyltransferase family 39 protein (Fragment) n... [more]
A0A7V9N6Y2_9CHLR7.030e-1043.02Glycosyltransferase family 39 protein n=1 Tax=Chlo... [more]
A0A7W1DWG7_9CHLR8.080e-938.37Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
A0A6J4UTC6_9CHLR1.270e-639.74Uncharacterized protein n=1 Tax=uncultured Thermom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57548contigP-wetherbeei_contig57548:9..257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size249
Hectar predicted targeting categorysignal peptide
Exons1
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186853.357398-CDS-P-wetherbeei_contig57548:8..2571683186853.357398-CDS-P-wetherbeei_contig57548:8..257Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57548 9..257 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57548.1.1prot_P-wetherbeei_contig57548.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57548 9..257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57548.1.1

>prot_P-wetherbeei_contig57548.1.1 ID=prot_P-wetherbeei_contig57548.1.1|Name=mRNA_P-wetherbeei_contig57548.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=83bp
MMYVGLFVLPIVLAALPFIAGSRPPRTRLGIAFVVAWAAILVAGLLVFAG
RDHYFPYIPQFLGVQGAGPTDLIGGRAPLIEQP
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mRNA from alignment at P-wetherbeei_contig57548:9..257+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57548.1.1 ID=mRNA_P-wetherbeei_contig57548.1.1|Name=mRNA_P-wetherbeei_contig57548.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig57548:9..257+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGTACGTCGGGCTCTTCGTCCTCCCGATCGTGCTCGCCGCCCTGCC GTTCATCGCCGGCTCCCGCCCCCCACGCACCCGGCTCGGGATCGCCTTCG TCGTCGCCTGGGCGGCGATCCTGGTGGCGGGCCTGCTGGTCTTCGCGGGG CGGGATCACTACTTCCCCTATATCCCGCAGTTCCTCGGCGTCCAGGGCGC CGGCCCGACCGATCTGATCGGCGGACGGGCGCCCCTGATCGAGCAGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57548:9..257+

>mRNA_P-wetherbeei_contig57548.1.1 ID=mRNA_P-wetherbeei_contig57548.1.1|Name=mRNA_P-wetherbeei_contig57548.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig57548:9..257+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGTACGTCGGGCTCTTCGTCCTCCCGATCGTGCTCGCCGCCCTGCC
GTTCATCGCCGGCTCCCGCCCCCCACGCACCCGGCTCGGGATCGCCTTCG
TCGTCGCCTGGGCGGCGATCCTGGTGGCGGGCCTGCTGGTCTTCGCGGGG
CGGGATCACTACTTCCCCTATATCCCGCAGTTCCTCGGCGTCCAGGGCGC
CGGCCCGACCGATCTGATCGGCGGACGGGCGCCCCTGATCGAGCAGCCC
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