mRNA_P-wetherbeei_contig57538.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57538.1.1
Unique NamemRNA_P-wetherbeei_contig57538.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57538.1.1 vs. uniprot
Match: A0A7X1P2J5_9PROT (Heme-binding protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7X1P2J5_9PROT)

HSP 1 Score: 179 bits (454), Expect = 1.270e-55
Identity = 92/122 (75.41%), Postives = 103/122 (84.43%), Query Frame = 1 
Query:    1 VVEPGCVVKAFKKEDGSAMMRFEMAFGKAYASLALGRSSDLVRQRAEHRPMFMDYMIGASRGQIFCEGGGQLIRDANGEVIGAVGVTGDLQEKDDELAAFGIRAAGLKTDADCATQGAQVRV 366
            VVEPG  VKAFKKEDGSAMMRFEMAFGKAYA+LALGRSSDLVR R + RP+FM+Y++ AS GQIF EGGG LIRD +G+VIGAVGVTGD QE+D ELAAFGIRAAGL+TD DC      VR+
Sbjct:   30 VVEPGAKVKAFKKEDGSAMMRFEMAFGKAYAALALGRSSDLVRIRTKERPLFMNYLLQASGGQIFPEGGGMLIRDTHGDVIGAVGVTGDRQERDQELAAFGIRAAGLRTDEDCGDLDVPVRL 151
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BLAST of mRNA_P-wetherbeei_contig57538.1.1 vs. uniprot
Match: A0A7C2YDB5_9PROT (Heme-binding protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2YDB5_9PROT)

HSP 1 Score: 179 bits (453), Expect = 1.990e-55
Identity = 88/123 (71.54%), Postives = 107/123 (86.99%), Query Frame = 1 
Query:    1 VVEPGCVVKAFKKEDGSAMMRFEMAFGKAYASLALGRSSDLVRQRAEHRPMFMDYMIGASRGQIFCEGGGQLIRDANGEVIGAVGVTGDLQEKDDELAAFGIRAAGLKTDADCATQGAQVRVT 369
            + + G  +KAFKKEDGSAMMRFEMAFGKAYA+LALGRSS LVR RAE +P+F++Y+IGAS GQ+F EGGG+LIRDA+GEVIGA+GVTG+ + +D+ELAA+GIRAAGLKTD DCA  G  VR+T
Sbjct:   32 ITDQGARLKAFKKEDGSAMMRFEMAFGKAYAALALGRSSSLVRLRAEEKPLFVNYLIGASGGQLFAEGGGRLIRDAHGEVIGAIGVTGETEARDEELAAYGIRAAGLKTDEDCAHLGRHVRLT 154
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BLAST of mRNA_P-wetherbeei_contig57538.1.1 vs. uniprot
Match: A0A534U869_9DELT (Heme-binding protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534U869_9DELT)

HSP 1 Score: 176 bits (446), Expect = 2.240e-54
Identity = 91/122 (74.59%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:    1 VVEPGCVVKAFKKEDGSAMMRFEMAFGKAYASLALGRSSDLVRQRAEHRPMFMDYMIGASRGQIFCEGGGQLIRDANGEVIGAVGVTGDLQEKDDELAAFGIRAAGLKTDADCATQGAQVRV 366
            +VEPG  VKAF+KEDGSAMMRFEMAFGKAYA+LALGRSS LVR R E RP+FM Y++ AS  QIF EGGG LIRD  GEVIGA GVTGD QE+D+ELAA GIRAAG KTD DCA  G QVR+
Sbjct:   32 IVEPGAKVKAFQKEDGSAMMRFEMAFGKAYAALALGRSSSLVRVRTEERPLFMQYLMRASGDQIFPEGGGMLIRDNGGEVIGAAGVTGDTQERDEELAAHGIRAAGFKTDEDCADLGKQVRL 153
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BLAST of mRNA_P-wetherbeei_contig57538.1.1 vs. uniprot
Match: A0A7C3JL00_9DELT (Heme-binding protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C3JL00_9DELT)

HSP 1 Score: 174 bits (440), Expect = 1.950e-53
Identity = 90/122 (73.77%), Postives = 102/122 (83.61%), Query Frame = 1 
Query:    1 VVEPGCVVKAFKKEDGSAMMRFEMAFGKAYASLALGRSSDLVRQRAEHRPMFMDYMIGASRGQIFCEGGGQLIRDANGEVIGAVGVTGDLQEKDDELAAFGIRAAGLKTDADCATQGAQVRV 366
            V+EPG  VKAF+KED S+MMRFEMA+GKAYASLALGRSS LVR RAE RPMFM Y++ AS  QIF EGGG+LIRD  G+VIGAVGVTGD QE+D+ELAA GIRAAGL TD DCA  G +VR+
Sbjct:   34 VLEPGAKVKAFQKEDDSSMMRFEMAYGKAYASLALGRSSSLVRMRAEERPMFMQYLLRASDDQIFPEGGGRLIRDQRGDVIGAVGVTGDTQEQDEELAAHGIRAAGLLTDEDCADLGTRVRL 155
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BLAST of mRNA_P-wetherbeei_contig57538.1.1 vs. uniprot
Match: A0A1F4B8Z7_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 TaxID=1797492 RepID=A0A1F4B8Z7_9PROT)

HSP 1 Score: 172 bits (436), Expect = 7.440e-53
Identity = 88/122 (72.13%), Postives = 102/122 (83.61%), Query Frame = 1 
Query:    1 VVEPGCVVKAFKKEDGSAMMRFEMAFGKAYASLALGRSSDLVRQRAEHRPMFMDYMIGASRGQIFCEGGGQLIRDANGEVIGAVGVTGDLQEKDDELAAFGIRAAGLKTDADCATQGAQVRV 366
            V +PG  VKAFKK+DGSAMMRFEMA GKA+A+LALGRSS LVR+R E RP+FM+Y+I AS G+IF EGGG+LIRD  GEVIGAVGVTGD + +D+ELAA GIRAAGLKTD DCA  G  VR+
Sbjct:   32 VTDPGARVKAFKKDDGSAMMRFEMAMGKAHAALALGRSSSLVRERTEARPLFMNYLIDASGGRIFPEGGGRLIRDERGEVIGAVGVTGDTEARDEELAAHGIRAAGLKTDEDCAALGKHVRL 153
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BLAST of mRNA_P-wetherbeei_contig57538.1.1 vs. uniprot
Match: A0A0S8BSU1_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineae bacterium SG8_19 TaxID=1703386 RepID=A0A0S8BSU1_9CHLR)

HSP 1 Score: 171 bits (433), Expect = 2.130e-52
Identity = 87/122 (71.31%), Postives = 99/122 (81.15%), Query Frame = 1 
Query:    1 VVEPGCVVKAFKKEDGSAMMRFEMAFGKAYASLALGRSSDLVRQRAEHRPMFMDYMIGASRGQIFCEGGGQLIRDANGEVIGAVGVTGDLQEKDDELAAFGIRAAGLKTDADCATQGAQVRV 366
            V +PG   KAFKKEDGSAMMRFEMA GKAYA+LALGRSS LVR R E RP+FM++++GAS GQIF EGGG LIR+  GEVIGAVGVTGD QE+D+ELA +GIRAA LKTD DC   G  VR+
Sbjct:   32 VTDPGARPKAFKKEDGSAMMRFEMALGKAYAALALGRSSSLVRMRTEERPLFMNFLMGASSGQIFPEGGGLLIRNDRGEVIGAVGVTGDTQERDEELAVYGIRAANLKTDEDCTRLGVHVRL 153
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BLAST of mRNA_P-wetherbeei_contig57538.1.1 vs. uniprot
Match: UPI001BCED5E4 (heme-binding protein n=1 Tax=Bradyrhizobium sp. dw_411 TaxID=2720082 RepID=UPI001BCED5E4)

HSP 1 Score: 171 bits (433), Expect = 2.130e-52
Identity = 86/122 (70.49%), Postives = 101/122 (82.79%), Query Frame = 1 
Query:    1 VVEPGCVVKAFKKEDGSAMMRFEMAFGKAYASLALGRSSDLVRQRAEHRPMFMDYMIGASRGQIFCEGGGQLIRDANGEVIGAVGVTGDLQEKDDELAAFGIRAAGLKTDADCATQGAQVRV 366
            VVEPGC+VKAF+KEDGS+M+RFEMAFGKAYA+LALGRSS LVR R E +P+FM Y++ A+  +IF EGGG LIR  NG+V+GAVGVTGD + KD+ELAAFGIRAAG KTD DCA  G  V V
Sbjct:   30 VVEPGCIVKAFQKEDGSSMVRFEMAFGKAYAALALGRSSTLVRVRNEEKPVFMRYLLSATDNKIFPEGGGMLIRADNGDVVGAVGVTGDTEHKDEELAAFGIRAAGFKTDDDCAGMGRGVNV 151
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BLAST of mRNA_P-wetherbeei_contig57538.1.1 vs. uniprot
Match: A0A537TGI0_9PROT (Heme-binding protein n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537TGI0_9PROT)

HSP 1 Score: 169 bits (427), Expect = 1.910e-51
Identity = 88/125 (70.40%), Postives = 104/125 (83.20%), Query Frame = 1 
Query:    1 VVEPGCVVKAFKKEDGSAMMRFEMAFGKAYASLALGRSSDLVRQRAEHRPMFMDYMIGASRGQIFCEGGGQLIRDANGEVIGAVGVTGDLQEKDDELAAFGIRAAGLKTDADCATQGAQ--VRVT 369
            VVEPGC VKAFKKEDGS+M+RFEMA+GKAYA+LA+GRSS LV+ RAE +P+FM Y+I AS  QIF EGGG  IRD +GEVIGAVGVTGD +E+D+ELAA G+RA GLKTD DCA  G +  VR+T
Sbjct:   32 VVEPGCKVKAFKKEDGSSMIRFEMAYGKAYAALAMGRSSKLVKLRAEEKPIFMRYLIAASGEQIFPEGGGLQIRDHSGEVIGAVGVTGDTEERDEELAAHGVRAIGLKTDEDCAALGRRRGVRLT 156
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BLAST of mRNA_P-wetherbeei_contig57538.1.1 vs. uniprot
Match: A0A537MN23_9PROT (Heme-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537MN23_9PROT)

HSP 1 Score: 167 bits (424), Expect = 7.250e-51
Identity = 84/117 (71.79%), Postives = 99/117 (84.62%), Query Frame = 1 
Query:    1 VVEPGCVVKAFKKEDGSAMMRFEMAFGKAYASLALGRSSDLVRQRAEHRPMFMDYMIGASRGQIFCEGGGQLIRDANGEVIGAVGVTGDLQEKDDELAAFGIRAAGLKTDADCATQG 351
            VVEPGC VKAFKKEDGS+M+RFEMA+GKAYA+LA+GRSS LV+ RAE +P+FM Y++ AS  QIF EGGG  IR  +GEVIGAVGVTGD +E+D+ELAA+GIR AGLKTD DCA  G
Sbjct:   41 VVEPGCKVKAFKKEDGSSMIRFEMAYGKAYAALAMGRSSKLVQVRAEEKPIFMRYLLSASGDQIFPEGGGMQIRARDGEVIGAVGVTGDTEERDEELAAYGIRVAGLKTDEDCADLG 157
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BLAST of mRNA_P-wetherbeei_contig57538.1.1 vs. uniprot
Match: A0A3N5WJH6_9PROT (Heme-binding protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5WJH6_9PROT)

HSP 1 Score: 167 bits (422), Expect = 2.880e-50
Identity = 87/122 (71.31%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:    1 VVEPGCVVKAFKKEDGSAMMRFEMAFGKAYASLALGRSSDLVRQRAEHRPMFMDYMIGASRGQIFCEGGGQLIRDANGEVIGAVGVTGDLQEKDDELAAFGIRAAGLKTDADCATQGAQVRV 366
            VVE G VVKAFKKEDGSAMMRFEMA GKA+A+LALGRSS LVR R E RP+FMD++  AS+ +IF EGGG LIR A+GE++GAVGVTGD QE+D+ LAA GIRAAGLKTD DCA     VR+
Sbjct:   66 VVEHGAVVKAFKKEDGSAMMRFEMALGKAHAALALGRSSSLVRLRTEERPLFMDFLFKASQDRIFAEGGGMLIRGADGELLGAVGVTGDTQERDEALAAHGIRAAGLKTDEDCAGLEHHVRL 187
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57538.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X1P2J5_9PROT1.270e-5575.41Heme-binding protein n=1 Tax=Betaproteobacteria ba... [more]
A0A7C2YDB5_9PROT1.990e-5571.54Heme-binding protein n=1 Tax=Betaproteobacteria ba... [more]
A0A534U869_9DELT2.240e-5474.59Heme-binding protein n=1 Tax=Deltaproteobacteria b... [more]
A0A7C3JL00_9DELT1.950e-5373.77Heme-binding protein n=1 Tax=Deltaproteobacteria b... [more]
A0A1F4B8Z7_9PROT7.440e-5372.13Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A0S8BSU1_9CHLR2.130e-5271.31Uncharacterized protein n=1 Tax=Anaerolineae bacte... [more]
UPI001BCED5E42.130e-5270.49heme-binding protein n=1 Tax=Bradyrhizobium sp. dw... [more]
A0A537TGI0_9PROT1.910e-5170.40Heme-binding protein n=2 Tax=Alphaproteobacteria b... [more]
A0A537MN23_9PROT7.250e-5171.79Heme-binding protein n=1 Tax=Alphaproteobacteria b... [more]
A0A3N5WJH6_9PROT2.880e-5071.31Heme-binding protein n=1 Tax=Betaproteobacteria ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57538contigP-wetherbeei_contig57538:134..511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1449065.JMLL01000010_gene1531
Preferred nameMA20_43165
PFAMsHaem_degrading
Model size378
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.17e-28
EggNOG OGsCOG3193@1|root,COG3193@2|Bacteria,1N08N@1224|Proteobacteria,2U5ES@28211|Alphaproteobacteria,43KNU@69277|Phyllobacteriaceae
Descriptionprotein possibly involved in utilization of glycolate and propanediol
Cds size378
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186853.2045941-CDS-P-wetherbeei_contig57538:133..5111683186853.2045941-CDS-P-wetherbeei_contig57538:133..511Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57538 134..511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57538.1.1prot_P-wetherbeei_contig57538.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57538 134..511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57538.1.1

>prot_P-wetherbeei_contig57538.1.1 ID=prot_P-wetherbeei_contig57538.1.1|Name=mRNA_P-wetherbeei_contig57538.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
VVEPGCVVKAFKKEDGSAMMRFEMAFGKAYASLALGRSSDLVRQRAEHRP
MFMDYMIGASRGQIFCEGGGQLIRDANGEVIGAVGVTGDLQEKDDELAAF
GIRAAGLKTDADCATQGAQVRVTRD*
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mRNA from alignment at P-wetherbeei_contig57538:134..511-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57538.1.1 ID=mRNA_P-wetherbeei_contig57538.1.1|Name=mRNA_P-wetherbeei_contig57538.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig57538:134..511- (Phaeothamnion wetherbeei SAG_119_79)
GTGGTGGAGCCAGGCTGCGTCGTCAAGGCGTTCAAAAAGGAAGACGGCTC
GGCGATGATGCGGTTCGAGATGGCGTTCGGCAAGGCCTATGCATCACTCG
CGCTCGGGCGTTCGTCCGATCTCGTGCGTCAGCGCGCCGAGCACCGGCCG
ATGTTCATGGACTACATGATCGGCGCCTCGCGCGGGCAGATTTTCTGCGA
AGGCGGCGGGCAACTGATCCGCGACGCCAACGGCGAGGTTATCGGCGCGG
TCGGCGTCACCGGCGATCTGCAGGAGAAGGACGACGAGTTGGCCGCGTTC
GGTATCCGCGCCGCCGGGCTCAAGACCGATGCAGATTGCGCGACGCAAGG
CGCGCAGGTTCGCGTGACTCGGGATTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57538:134..511-

>mRNA_P-wetherbeei_contig57538.1.1 ID=mRNA_P-wetherbeei_contig57538.1.1|Name=mRNA_P-wetherbeei_contig57538.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig57538:134..511- (Phaeothamnion wetherbeei SAG_119_79)
GTGGTGGAGCCAGGCTGCGTCGTCAAGGCGTTCAAAAAGGAAGACGGCTC
GGCGATGATGCGGTTCGAGATGGCGTTCGGCAAGGCCTATGCATCACTCG
CGCTCGGGCGTTCGTCCGATCTCGTGCGTCAGCGCGCCGAGCACCGGCCG
ATGTTCATGGACTACATGATCGGCGCCTCGCGCGGGCAGATTTTCTGCGA
AGGCGGCGGGCAACTGATCCGCGACGCCAACGGCGAGGTTATCGGCGCGG
TCGGCGTCACCGGCGATCTGCAGGAGAAGGACGACGAGTTGGCCGCGTTC
GGTATCCGCGCCGCCGGGCTCAAGACCGATGCAGATTGCGCGACGCAAGG
CGCGCAGGTTCGCGTGACTCGGGATTGA
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