mRNA_P-wetherbeei_contig57509.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57509.1.1
Unique NamemRNA_P-wetherbeei_contig57509.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57509.1.1 vs. uniprot
Match: A0A7Y4X7Z8_9DELT (EthD family reductase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7Y4X7Z8_9DELT)

HSP 1 Score: 162 bits (410), Expect = 8.840e-48
Identity = 79/137 (57.66%), Postives = 98/137 (71.53%), Query Frame = 1
Query:    1 MIKVVSVLQRKPGLNVEDFQHYWLNKHAAIVSRLPRLRRYVQSHTLLAGYRKGAPAADGIAELCFDDSDALRALKDSVELKAVLADEPNFVDMTRFIQIHTDDHVIKNGAVPVGGVKNIEFVKRKVGMPVADFQHYW 411
            M+K +   +RKPGL+VE FQHYW   HA IV +LP +R+YVQSHTLL+GYRKG P  DG AEL FDD++A+RAL  + E  AVLADE NF+D +    I TD+HVIK GA+P   VKN+EFV  K GM +  FQ +W
Sbjct:    1 MVKNIVFFKRKPGLSVEAFQHYWRTTHAEIVCKLPGIRKYVQSHTLLSGYRKGEPVYDGAAELWFDDTNAMRALAGTKEAAAVLADEKNFLDPSTVGSIITDEHVIKPGAIPPDAVKNLEFVTHKPGMSIEAFQQHW 137          
BLAST of mRNA_P-wetherbeei_contig57509.1.1 vs. uniprot
Match: A0A7Y3GWE0_9DELT (EthD family reductase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3GWE0_9DELT)

HSP 1 Score: 161 bits (408), Expect = 1.990e-47
Identity = 79/140 (56.43%), Postives = 98/140 (70.00%), Query Frame = 1
Query:    1 MIKVVSVLQRKPGLNVEDFQHYWLNKHAAIVSRLPRLRRYVQSHTLLAGYRKGAPAADGIAELCFDDSDALRALKDSVELKAVLADEPNFVDMTRFIQIHTDDHVIKNGAVPVGGVKNIEFVKRKVGMPVADFQHYWMTT 420
            MIKVV+  +RK G +VEDFQ YW + H  + ++LP LRRYVQSHTLL GYRKG P  DG+AEL FDD+DALR L      +AV  DEP+F+D+    QI TDDH+IK+G +P  GVKNIEFV R+  + V  FQ +W  T
Sbjct:    1 MIKVVASFKRKAGSSVEDFQGYWHDVHGPLAAQLPGLRRYVQSHTLLGGYRKGEPVYDGVAELWFDDTDALRQLNGHPAYEAVRTDEPHFMDVASMAQIVTDDHLIKDGPIPADGVKNIEFVTRRSDLDVPAFQKHWRET 140          
BLAST of mRNA_P-wetherbeei_contig57509.1.1 vs. uniprot
Match: A0A3D5DET7_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DET7_9GAMM)

HSP 1 Score: 160 bits (405), Expect = 5.050e-47
Identity = 76/138 (55.07%), Postives = 100/138 (72.46%), Query Frame = 1
Query:    1 MIKVVSVLQRKPGLNVEDFQHYWLNKHAAIVSRLPRLRRYVQSHTLLAGYRKGAPAADGIAELCFDDSDALRALKDSVELKAVLADEPNFVDMTRFIQIHTDDHVIKNGAVPVGGVKNIEFVKRKVGMPVADFQHYWM 414
            M+KV+SV +RK G++V++FQ YW N+HA IV R+P +RRYVQSHTL++GYR   PA DG+AEL FD+SDALRAL DS  L    AD   F+D++ + +I T+D VIK+G VP+ GVKNIE V +K  M    F  YW+
Sbjct:    1 MVKVISVFRRKEGMSVDEFQSYWRNQHAEIVCRMPGIRRYVQSHTLISGYRNRTPACDGVAELTFDNSDALRALADSASLNDTRADHAKFMDLSSYKEIVTEDAVIKHGEVPLDGVKNIELVVKKATMEPEYFHRYWI 138          
BLAST of mRNA_P-wetherbeei_contig57509.1.1 vs. uniprot
Match: A0A1F4C688_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13b TaxID=1797496 RepID=A0A1F4C688_9PROT)

HSP 1 Score: 156 bits (394), Expect = 2.400e-45
Identity = 74/140 (52.86%), Postives = 94/140 (67.14%), Query Frame = 1
Query:    1 MIKVVSVLQRKPGLNVEDFQHYWLNKHAAIVSRLPRLRRYVQSHTLLAGYRKGAPAADGIAELCFDDSDALRALKDSVELKAVLADEPNFVDMTRFIQIHTDDHVIKNGAVPVGGVKNIEFVKRKVGMPVADFQHYWMTT 420
            M+K+V   +RKPG++VEDFQ +W   HA I+ RLP +RRY+QSH L +GYRKG P  D +AE  FDD+ A++ L    E   VLADEPNF+D      I TD++VIK+  VP   VK+I+FV RK GM V DFQ YW  T
Sbjct:    1 MVKIVIFFKRKPGMSVEDFQKHWRTTHADIIVRLPGIRRYIQSHVLASGYRKGEPVYDAVAESYFDDTQAMKVLSRMPEYAKVLADEPNFIDGPSMASIITDEYVIKDAPVPENAVKSIDFVNRKTGMSVDDFQKYWRET 140          
BLAST of mRNA_P-wetherbeei_contig57509.1.1 vs. uniprot
Match: A0A2V7APB7_9BACT (Uncharacterized protein n=2 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7APB7_9BACT)

HSP 1 Score: 154 bits (388), Expect = 1.880e-44
Identity = 74/137 (54.01%), Postives = 94/137 (68.61%), Query Frame = 1
Query:    1 MIKVVSVLQRKPGLNVEDFQHYWLNKHAAIVSRLPRLRRYVQSHTLLAGYRKGAPAADGIAELCFDDSDALRALKDSVELKAVLADEPNFVDMTRFIQIHTDDHVIKNGAVPVGGVKNIEFVKRKVGMPVADFQHYW 411
            M+K VS  +R+ G++VE FQ YWL +H  +V RLP +RRYVQSHTL  GYRKG PA DGIAE+ FDD+ A+RAL  +    AV ADE  F++      I T++HVIK G+ P GGVKN+EFV  + GM +  FQ YW
Sbjct:    1 MVKAVSFFKRRSGMSVEAFQAYWLTRHPDVVVRLPGIRRYVQSHTLPGGYRKGEPAYDGIAEIWFDDTGAMRALAGTPAYAAVEADEARFIERATMGLIITEEHVIKGGSAPAGGVKNVEFVTHRPGMAIDAFQRYW 137          
BLAST of mRNA_P-wetherbeei_contig57509.1.1 vs. uniprot
Match: A0A0T5ZYP4_9BACT (Uncharacterized protein n=2 Tax=unclassified Candidatus Rokubacteria TaxID=2760815 RepID=A0A0T5ZYP4_9BACT)

HSP 1 Score: 154 bits (388), Expect = 1.930e-44
Identity = 74/137 (54.01%), Postives = 94/137 (68.61%), Query Frame = 1
Query:    1 MIKVVSVLQRKPGLNVEDFQHYWLNKHAAIVSRLPRLRRYVQSHTLLAGYRKGAPAADGIAELCFDDSDALRALKDSVELKAVLADEPNFVDMTRFIQIHTDDHVIKNGAVPVGGVKNIEFVKRKVGMPVADFQHYW 411
            M+K +S  +RK G++VE FQ YW   HA +V ++P +RRYVQSHT  AGYRKG P  DGIAE+ FDD+ A+RAL  + E  A+ ADE  F+D      I T+DHVIK+GAVP  GVKNIEF+  + GM +  FQ YW
Sbjct:    1 MVKAISFFKRKSGMSVEGFQEYWRTAHAELVVKMPGIRRYVQSHTQPAGYRKGEPLYDGIAEIWFDDTQAMRALVGTREYAAIQADELQFIDRATMGLIVTEDHVIKDGAVPRNGVKNIEFINHRPGMTIEAFQKYW 137          
BLAST of mRNA_P-wetherbeei_contig57509.1.1 vs. uniprot
Match: A0A2E9Y616_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E9Y616_9PROT)

HSP 1 Score: 153 bits (386), Expect = 3.880e-44
Identity = 74/137 (54.01%), Postives = 90/137 (65.69%), Query Frame = 1
Query:    1 MIKVVSVLQRKPGLNVEDFQHYWLNKHAAIVSRLPRLRRYVQSHTLLAGYRKGAPAADGIAELCFDDSDALRALKDSVELKAVLADEPNFVDMTRFIQIHTDDHVIKNGAVPVGGVKNIEFVKRKVGMPVADFQHYW 411
            MIKV++ ++RKPG++VEDFQ YW   HA +V  LP LRRY+QSH L  GYRKG    DGIAE+  DD D LRA       +A+  DE NF+D      I T +H+IK+G +P G VKNIEFV RK GM V  FQ YW
Sbjct:    1 MIKVITCIKRKPGMSVEDFQAYWRTDHAEVVKGLPNLRRYIQSHALPGGYRKGELPYDGIAEIWVDDVDTLRANAGGAAYEAIQRDEENFIDRPNMATILTQEHIIKDGPIPEGAVKNIEFVPRKTGMEVEAFQIYW 137          
BLAST of mRNA_P-wetherbeei_contig57509.1.1 vs. uniprot
Match: A0A1Z9UJH8_9GAMM (Uncharacterized protein n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9UJH8_9GAMM)

HSP 1 Score: 152 bits (383), Expect = 1.070e-43
Identity = 74/140 (52.86%), Postives = 101/140 (72.14%), Query Frame = 1
Query:    1 MIKVVSVLQRKPGLNVEDFQHYWLNKHAAIVSRLPRLRRYVQSHTLLAGYRKGAPAADGIAELCFDDSDALRALKDSVELKAVLADEPNFVDMTRFIQIHTDDHVIKNGAVPVGGVKNIEFVKRKVGMPVADFQHYWMTT 420
            MIKVVSV++R+ G++VE FQ YW+N+H+ +V++LP L+RYVQSHT L+GY+   PA DGI+EL FDD+DAL AL+ S  L  V  DE  F+D+   +Q+  ++HVIK+  +   GVKNIE V+RK GM V  FQ +W  T
Sbjct:    1 MIKVVSVIKRRSGMSVEAFQDYWINQHSGLVAQLPSLKRYVQSHTRLSGYKNREPAVDGISELWFDDTDALSALQASPLLGVVAEDEKEFIDIGSQVQLLVEEHVIKDEGICGAGVKNIEIVRRKSGMQVEAFQTHWRET 140          
BLAST of mRNA_P-wetherbeei_contig57509.1.1 vs. uniprot
Match: A0A2V6YUY0_9BACT (Uncharacterized protein n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6YUY0_9BACT)

HSP 1 Score: 152 bits (383), Expect = 1.070e-43
Identity = 73/137 (53.28%), Postives = 94/137 (68.61%), Query Frame = 1
Query:    1 MIKVVSVLQRKPGLNVEDFQHYWLNKHAAIVSRLPRLRRYVQSHTLLAGYRKGAPAADGIAELCFDDSDALRALKDSVELKAVLADEPNFVDMTRFIQIHTDDHVIKNGAVPVGGVKNIEFVKRKVGMPVADFQHYW 411
            M+K VS  +RK G++VE FQ YW  +H A+V +LP +RRYVQSHTL + YR+G P  DGIAE+ FDD+  +RAL  + E  AV ADE  F+  +    I T++HV+K+G VP  GVK +EFV RK GMPV  FQ YW
Sbjct:    1 MVKAVSFFKRKSGMSVEAFQTYWRTRHPAVVIKLPGIRRYVQSHTLRSAYREGEPVYDGIAEVWFDDTRVMRALASTAEYAAVQADEAQFIARSTMGLIVTEEHVVKDGQVPADGVKKVEFVTRKAGMPVDRFQPYW 137          
BLAST of mRNA_P-wetherbeei_contig57509.1.1 vs. uniprot
Match: A0A1F4HDM5_9PROT (Uncharacterized protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4HDM5_9PROT)

HSP 1 Score: 151 bits (381), Expect = 2.150e-43
Identity = 70/138 (50.72%), Postives = 94/138 (68.12%), Query Frame = 1
Query:    1 MIKVVSVLQRKPGLNVEDFQHYWLNKHAAIVSRLPRLRRYVQSHTLLAGYRKGAPAADGIAELCFDDSDALRALKDSVELKAVLADEPNFVDMTRFIQIHTDDHVIKNGAVPVGGVKNIEFVKRKVGMPVADFQHYWM 414
            MIK V   +R+PG+ VE FQ +W  +HA I++RLP LRRYVQ+HTL++GYRKG P  D +AE  FDD+ A++AL  +    AVLADEPNF+D      I T++HV+K+G      +KNI F+  K GMP+ DF  YW+
Sbjct:    1 MIKAVIFFKRRPGMTVEAFQEHWRTRHAEIIARLPGLRRYVQNHTLVSGYRKGEPLFDAVAESSFDDTQAMKALLGTPHYAAVLADEPNFIDRASMGSIITEEHVVKDGHTGPEAIKNIGFMTHKPGMPIGDFFRYWL 138          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57509.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y4X7Z8_9DELT8.840e-4857.66EthD family reductase n=1 Tax=Deltaproteobacteria ... [more]
A0A7Y3GWE0_9DELT1.990e-4756.43EthD family reductase n=1 Tax=Myxococcales bacteri... [more]
A0A3D5DET7_9GAMM5.050e-4755.07Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A1F4C688_9PROT2.400e-4552.86Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A2V7APB7_9BACT1.880e-4454.01Uncharacterized protein n=2 Tax=Candidatus Rokubac... [more]
A0A0T5ZYP4_9BACT1.930e-4454.01Uncharacterized protein n=2 Tax=unclassified Candi... [more]
A0A2E9Y616_9PROT3.880e-4454.01Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A1Z9UJH8_9GAMM1.070e-4352.86Uncharacterized protein n=3 Tax=Gammaproteobacteri... [more]
A0A2V6YUY0_9BACT1.070e-4353.28Uncharacterized protein n=1 Tax=Candidatus Rokubac... [more]
A0A1F4HDM5_9PROT2.150e-4350.72Uncharacterized protein n=2 Tax=unclassified Betap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57509contigP-wetherbeei_contig57509:92..511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1007105.PT7_2633
PFAMsEthD
Model size420
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.36e-30
EggNOG OGsarCOG10157@1|root,3220G@2|Bacteria,1NPKZ@1224|Proteobacteria,2VYBF@28216|Betaproteobacteria,3T53D@506|Alcaligenaceae
DescriptionMethylmuconolactone methyl-isomerase
Cds size420
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186852.8399315-CDS-P-wetherbeei_contig57509:91..5111683186852.8399315-CDS-P-wetherbeei_contig57509:91..511Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57509 92..511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57509.1.1prot_P-wetherbeei_contig57509.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57509 92..511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57509.1.1

>prot_P-wetherbeei_contig57509.1.1 ID=prot_P-wetherbeei_contig57509.1.1|Name=mRNA_P-wetherbeei_contig57509.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
MIKVVSVLQRKPGLNVEDFQHYWLNKHAAIVSRLPRLRRYVQSHTLLAGY
RKGAPAADGIAELCFDDSDALRALKDSVELKAVLADEPNFVDMTRFIQIH
TDDHVIKNGAVPVGGVKNIEFVKRKVGMPVADFQHYWMTT
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mRNA from alignment at P-wetherbeei_contig57509:92..511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57509.1.1 ID=mRNA_P-wetherbeei_contig57509.1.1|Name=mRNA_P-wetherbeei_contig57509.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig57509:92..511+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATTAAAGTTGTCTCGGTGCTGCAGCGTAAGCCCGGCCTCAATGTCGA GGATTTCCAGCACTACTGGCTGAATAAGCACGCCGCCATCGTCAGCCGAC TGCCGCGGCTGCGCCGCTATGTGCAATCGCATACCTTGTTAGCGGGCTAT CGCAAGGGCGCGCCTGCGGCTGATGGCATCGCCGAGTTGTGCTTCGATGA CAGCGATGCGTTGCGCGCGCTCAAGGACAGCGTCGAACTCAAAGCCGTGC TGGCCGATGAACCGAATTTCGTCGACATGACGCGCTTTATTCAGATCCAT ACCGATGACCATGTGATCAAGAACGGCGCGGTGCCGGTCGGCGGTGTCAA GAATATAGAATTCGTCAAGCGCAAAGTCGGCATGCCGGTAGCAGACTTCC AGCACTACTGGATGACCACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57509:92..511+

>mRNA_P-wetherbeei_contig57509.1.1 ID=mRNA_P-wetherbeei_contig57509.1.1|Name=mRNA_P-wetherbeei_contig57509.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig57509:92..511+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATTAAAGTTGTCTCGGTGCTGCAGCGTAAGCCCGGCCTCAATGTCGA
GGATTTCCAGCACTACTGGCTGAATAAGCACGCCGCCATCGTCAGCCGAC
TGCCGCGGCTGCGCCGCTATGTGCAATCGCATACCTTGTTAGCGGGCTAT
CGCAAGGGCGCGCCTGCGGCTGATGGCATCGCCGAGTTGTGCTTCGATGA
CAGCGATGCGTTGCGCGCGCTCAAGGACAGCGTCGAACTCAAAGCCGTGC
TGGCCGATGAACCGAATTTCGTCGACATGACGCGCTTTATTCAGATCCAT
ACCGATGACCATGTGATCAAGAACGGCGCGGTGCCGGTCGGCGGTGTCAA
GAATATAGAATTCGTCAAGCGCAAAGTCGGCATGCCGGTAGCAGACTTCC
AGCACTACTGGATGACCACC
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