mRNA_P-wetherbeei_contig57491.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57491.1.1
Unique NamemRNA_P-wetherbeei_contig57491.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57491.1.1 vs. uniprot
Match: A0A371B864_9HYPH (Methyl-accepting transducer domain-containing protein n=1 Tax=Pseudolabrys sp. GY_H TaxID=2292256 RepID=A0A371B864_9HYPH)

HSP 1 Score: 171 bits (434), Expect = 3.580e-48
Identity = 100/170 (58.82%), Postives = 126/170 (74.12%), Query Frame = 1
Query:    1 RRQLVADMADGKSTSTEVTTPEGRILLVRNRGMIGGGWVGSHDDITDQRHAELERASMQKQQDRRALIEQAIAAFRQRVEEHLHAASAGAMAMRTTAATLRATSERSSSNAAGAVSASNEACANVETAAVAADELATSIGEIGRQLSLTTDIVQVAVVEAKGTNNQIDAL 510
            R QL+ADM   K+ + EV TP+GR+L +RN+G+ GGGWVGSH+DIT +R AE ER ++Q Q +RRA IE AI  FR R++E L AAS GA  MR TAA L A S R+SS A  AVSA++EA  NVETA+VA+D+LA+SI EI RQL++TTDIV+ AV E +G N QI  L
Sbjct:  137 RHQLIADMRQLKAVNNEVETPDGRLLSIRNQGLPGGGWVGSHEDITQRREAERERENLQAQANRRAAIELAITTFRSRIDEQLRAASEGARTMRATAAALFANSGRTSSGANTAVSAAHEASTNVETASVASDQLASSIVEIARQLTVTTDIVRGAVDETRGANAQIGGL 306          
BLAST of mRNA_P-wetherbeei_contig57491.1.1 vs. uniprot
Match: A0A0Q7TPD1_9HYPH (Methyl-accepting transducer domain-containing protein n=1 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TPD1_9HYPH)

HSP 1 Score: 163 bits (412), Expect = 6.030e-45
Identity = 96/170 (56.47%), Postives = 123/170 (72.35%), Query Frame = 1
Query:    1 RRQLVADMADGKSTSTEVTTPEGRILLVRNRGMIGGGWVGSHDDITDQRHAELERASMQKQQDRRALIEQAIAAFRQRVEEHLHAASAGAMAMRTTAATLRATSERSSSNAAGAVSASNEACANVETAAVAADELATSIGEIGRQLSLTTDIVQVAVVEAKGTNNQIDAL 510
            RRQL+ DM   K+ + EV  P+GR+L + N+G+ GGGWVGSH+DIT +R AE ER ++Q Q  RR  I+ AIAAFR  ++E L A +  A AMRTTA TL A S R+ S AA AVS S+EA  +VETAA+A+DELA+SI EI RQLS+TT IV+ AV E +GTN Q+ +L
Sbjct:  137 RRQLIEDMRQLKAMTAEVRAPDGRLLQISNQGLPGGGWVGSHEDITARREAEREREALQVQSKRREAIDAAIAAFRVHIDEQLQAVTESARAMRTTATTLSANSGRTLSGAASAVSTSHEAATSVETAAIASDELASSIVEIARQLSVTTTIVRGAVDETRGTNAQVVSL 306          
BLAST of mRNA_P-wetherbeei_contig57491.1.1 vs. uniprot
Match: A0A345ZY09_9HYPH (Methyl-accepting transducer domain-containing protein n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZY09_9HYPH)

HSP 1 Score: 161 bits (408), Expect = 2.440e-44
Identity = 95/170 (55.88%), Postives = 125/170 (73.53%), Query Frame = 1
Query:    1 RRQLVADMADGKSTSTEVTTPEGRILLVRNRGMIGGGWVGSHDDITDQRHAELERASMQKQQDRRALIEQAIAAFRQRVEEHLHAASAGAMAMRTTAATLRATSERSSSNAAGAVSASNEACANVETAAVAADELATSIGEIGRQLSLTTDIVQVAVVEAKGTNNQIDAL 510
            +R++    A+GK+T+TEV +  GR +++ NR M  GGWV +H+D+T++R A  ERA +Q+Q +RRA +EQAIA FRQ+VE HLH+ S  A+ MR TAATL   S +++  A  AV ASNEA  NV+TAA AADELA SIGEIGRQL+  TD+V+ AV EA+GTN QI AL
Sbjct:  141 QRRVSTANAEGKTTTTEVVS-NGRRVVIVNRPMPDGGWVATHEDVTERRDAARERAVLQEQAERRATVEQAIAGFRQQVEAHLHSVSDSAVVMRGTAATLLTNSAQTAKGAESAVGASNEASVNVDTAATAADELAKSIGEIGRQLAKATDVVRAAVSEAQGTNAQITAL 309          
BLAST of mRNA_P-wetherbeei_contig57491.1.1 vs. uniprot
Match: UPI0010BE8AAB (PAS-domain containing protein n=1 Tax=Pseudolabrys sp. FHR47 TaxID=2562284 RepID=UPI0010BE8AAB)

HSP 1 Score: 154 bits (389), Expect = 1.330e-41
Identity = 93/170 (54.71%), Postives = 118/170 (69.41%), Query Frame = 1
Query:    1 RRQLVADMADGKSTSTEVTTPEGRILLVRNRGMIGGGWVGSHDDITDQRHAELERASMQKQQDRRALIEQAIAAFRQRVEEHLHAASAGAMAMRTTAATLRATSERSSSNAAGAVSASNEACANVETAAVAADELATSIGEIGRQLSLTTDIVQVAVVEAKGTNNQIDAL 510
            RR+L+ DM   K+T+ EV  P GR+L + N+G+ GGGWVGSH+DIT++R A LER ++Q Q  RRA I+ AIAAFR R++E L AAS GA  MR TA TL A S R+S+ A  AVSAS EA AN         ELA+SI EI RQL++TTDIV+ AV E +G ++QI  L
Sbjct:  135 RRKLIDDMRQLKTTNVEVKAPNGRLLQISNQGLPGGGWVGSHEDITERREAALERENLQAQASRRAAIDSAIAAFRSRIDEQLRAASDGARTMRATATTLFANSGRTSTGANTAVSASEEASANXXXXXXXXXELASSIVEIARQLTVTTDIVRGAVDETRGASSQIGRL 304          
BLAST of mRNA_P-wetherbeei_contig57491.1.1 vs. uniprot
Match: A0A537N8P1_9PROT (Methyl-accepting transducer domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537N8P1_9PROT)

HSP 1 Score: 142 bits (359), Expect = 1.890e-37
Identity = 82/170 (48.24%), Postives = 120/170 (70.59%), Query Frame = 1
Query:    1 RRQLVADMADGKSTSTEVTTPEGRILLVRNRGMIGGGWVGSHDDITDQRHAELERASMQKQQDRRALIEQAIAAFRQRVEEHLHAASAGAMAMRTTAATLRATSERSSSNAAGAVSASNEACANVETAAVAADELATSIGEIGRQLSLTTDIVQVAVVEAKGTNNQIDAL 510
            RR L+A +++GK+TS  + +  GR + V NR M GGGWVG+H+DIT++     +R  M  ++ RR L+E AIAAFR+R+++ L +  A A AM+ TA+ L  +S  ++     AV+AS+EA ++V TA+VAADEL TSI EIGRQL+LT ++VQ AV EA+ T+ +I+AL
Sbjct:  105 RRNLLAALSEGKTTSNVLDSGSGRTIAVINRPMAGGGWVGTHEDITERELLHKQRDEMAAREQRRVLVEAAIAAFRERMDKLLQSVEASADAMKATASKLSGSSSETTEQTEDAVNASSEASSSVRTASVAADELITSIAEIGRQLNLTNNVVQAAVNEARATDGEIEAL 274          
BLAST of mRNA_P-wetherbeei_contig57491.1.1 vs. uniprot
Match: A0A346A2L2_9HYPH (Methyl-accepting transducer domain-containing protein n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A346A2L2_9HYPH)

HSP 1 Score: 135 bits (340), Expect = 1.130e-34
Identity = 80/169 (47.34%), Postives = 114/169 (67.46%), Query Frame = 1
Query:    4 RQLVADMADGKSTSTEVTTPEGRILLVRNRGMIGGGWVGSHDDITDQRHAELERASMQKQQDRRALIEQAIAAFRQRVEEHLHAASAGAMAMRTTAATLRATSERSSSNAAGAVSASNEACANVETAAVAADELATSIGEIGRQLSLTTDIVQVAVVEAKGTNNQIDAL 510
            ++++  M  G+S    V   +GRI+ V+N  + GGGWV +H+D+T+QR AE ERA+++ Q+ RRA++E AI++FR  VE+ L      A AMR TA TL   S+++S  A  AV A NEA  NV+TAA+AADEL+ SI EI RQLS T +IV +A  EA+ T+ +I +L
Sbjct:  108 QRILDSMKHGESAPHYVQASDGRIVHVKNEPLPGGGWVSTHEDVTEQRRAEQERAAIRDQEQRRAIVESAISSFRPTVEQLLSRVGDSATAMRATAGTLLGFSDQTSQRADSAVHAFNEASTNVQTAAIAADELSRSIAEISRQLSRTNNIVDLATQEARATDQEIASL 276          
BLAST of mRNA_P-wetherbeei_contig57491.1.1 vs. uniprot
Match: A0A371B491_9HYPH (Methyl-accepting transducer domain-containing protein n=1 Tax=Pseudolabrys sp. GY_H TaxID=2292256 RepID=A0A371B491_9HYPH)

HSP 1 Score: 126 bits (317), Expect = 2.310e-31
Identity = 78/160 (48.75%), Postives = 105/160 (65.62%), Query Frame = 1
Query:   31 GKSTSTEVTTPEGRILLVRNRGMIGGGWVGSHDDITDQRHAELERASMQKQQDRRALIEQAIAAFRQRVEEHLHAASAGAMAMRTTAATLRATSERSSSNAAGAVSASNEACANVETAAVAADELATSIGEIGRQLSLTTDIVQVAVVEAKGTNNQIDAL 510
            G      V   +GRI+L RN  +  GGWV +H+D+T QR+AELERA+ +  + RRA ++ AI AFR   E+ L   S GA  MRTTA+ L   S+++S  A  A  A  EA ANVETAA+AA++L+ SIGEI RQLS T+DIV+ A  EA+ T+++I  L
Sbjct:  116 GSDMGAYVPASDGRIVLARNEALSDGGWVSTHEDVTQQRNAELERAANRDTEKRRAAVDGAIVAFRPVAEDLLLRVSEGASTMRTTASALFDASDKTSQCADSAAQAFTEASANVETAAIAAEQLSQSIGEISRQLSHTSDIVKQATDEARATDSEIGQL 275          
BLAST of mRNA_P-wetherbeei_contig57491.1.1 vs. uniprot
Match: A0A0Q7TN58_9HYPH (Methyl-accepting transducer domain-containing protein n=1 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TN58_9HYPH)

HSP 1 Score: 121 bits (303), Expect = 2.340e-29
Identity = 74/160 (46.25%), Postives = 104/160 (65.00%), Query Frame = 1
Query:   31 GKSTSTEVTTPEGRILLVRNRGMIGGGWVGSHDDITDQRHAELERASMQKQQDRRALIEQAIAAFRQRVEEHLHAASAGAMAMRTTAATLRATSERSSSNAAGAVSASNEACANVETAAVAADELATSIGEIGRQLSLTTDIVQVAVVEAKGTNNQIDAL 510
            G      V   +GRI+L +N  +  GGWV +H+D+T+Q  AELERA+ +  + RRAL++ AIA F+QRVE+ L    A A AMR TA  L  +S+++S  A  AV A NEA  NV+TAAVA +EL+ SI EI RQL+ T+D+V++   EA+  + +I  L
Sbjct:  116 GNDMGAYVPASDGRIVLAKNEPLDDGGWVSTHEDVTEQHKAELERAASRDAERRRALVDGAIADFQQRVEKILSRVGASAAAMRATANGLLGSSDKTSQCANTAVDAFNEASVNVDTAAVATEELSQSIAEISRQLTHTSDVVRLTTEEARSIDGEISGL 275          
BLAST of mRNA_P-wetherbeei_contig57491.1.1 vs. uniprot
Match: A0A1W6ZK69_9HYPH (Methyl-accepting transducer domain-containing protein n=1 Tax=Pseudorhodoplanes sinuspersici TaxID=1235591 RepID=A0A1W6ZK69_9HYPH)

HSP 1 Score: 115 bits (288), Expect = 3.360e-27
Identity = 73/163 (44.79%), Postives = 100/163 (61.35%), Query Frame = 1
Query:   22 MADGKSTSTEVTTPEGRILLVRNRGMIGGGWVGSHDDITDQRHAELERASMQKQQDRRALIEQAIAAFRQRVEEHLHAASAGAMAMRTTAATLRATSERSSSNAAGAVSASNEACANVETAAVAADELATSIGEIGRQLSLTTDIVQVAVVEAKGTNNQIDAL 510
            +A GK   T VT+ +GR++ V  + M  G WV +H D+T+Q+  E ERA+   ++ RRALIE AI +FR  ++  L   +  A  M+ TA++L A S ++S  A  AV ASNEA  NV       DE+A+SIGEI RQL  TTD+V+ AV EA+ TN  I  L
Sbjct:  118 IASGKGGITNVTSVKGRVIAVTEQPMPDGSWVATHQDVTEQQKLEQERATHAVEEQRRALIESAITSFRGSMDSVLRTVNESAATMKLTASSLFAASGQTSQRAESAVQASNEASTNVXXXXXXXDEMASSIGEISRQLVQTTDVVRHAVREAQSTNESIKGL 280          
BLAST of mRNA_P-wetherbeei_contig57491.1.1 vs. uniprot
Match: A0A127EU43_9HYPH (Methyl-accepting chemotaxis protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127EU43_9HYPH)

HSP 1 Score: 112 bits (281), Expect = 3.110e-26
Identity = 73/143 (51.05%), Postives = 92/143 (64.34%), Query Frame = 1
Query:   10 LVADMADGKSTSTEVTTPEGRILLVRNRGMIGGGWVGSHDDITDQRHAELERASMQKQQDRRALIEQAIAAFRQRVEEHLHAASAGAMAMRTTAATLRATSERSSSNAAGAVSASNEACANVETAAVAADELATSIGEIGRQL 438
            L+A +A+GK T T V   EGR + + NR M GGGWV +H+D+T+Q  AEL R +M+  + RR  IE+AIA FR RVE  L   +  A AM+TTA  L   SE++S  A  AV +SNEA  NV  AA AA EL+ SIGEI  QL
Sbjct:  109 LLATIANGK-TVTSVRENEGRFIQLANRPMPGGGWVATHEDVTEQHQAELARTAMRAVEGRRTAIEEAIAGFRTRVESVLKTVADSAAAMQTTAGGLLKESEKTSQRAQSAVRSSNEASTNVAVAATAAAELSASIGEISEQL 250          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57491.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A371B864_9HYPH3.580e-4858.82Methyl-accepting transducer domain-containing prot... [more]
A0A0Q7TPD1_9HYPH6.030e-4556.47Methyl-accepting transducer domain-containing prot... [more]
A0A345ZY09_9HYPH2.440e-4455.88Methyl-accepting transducer domain-containing prot... [more]
UPI0010BE8AAB1.330e-4154.71PAS-domain containing protein n=1 Tax=Pseudolabrys... [more]
A0A537N8P1_9PROT1.890e-3748.24Methyl-accepting transducer domain-containing prot... [more]
A0A346A2L2_9HYPH1.130e-3447.34Methyl-accepting transducer domain-containing prot... [more]
A0A371B491_9HYPH2.310e-3148.75Methyl-accepting transducer domain-containing prot... [more]
A0A0Q7TN58_9HYPH2.340e-2946.25Methyl-accepting transducer domain-containing prot... [more]
A0A1W6ZK69_9HYPH3.360e-2744.79Methyl-accepting transducer domain-containing prot... [more]
A0A127EU43_9HYPH3.110e-2651.05Methyl-accepting chemotaxis protein n=1 Tax=Rhodop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57491contigP-wetherbeei_contig57491:2..511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog551789.ATVJ01000001_gene679
PFAMsCache_3-Cache_2,HAMP,MCPsignal,sCache_3_3
Model size510
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03406
KEGG Pathwayko02020,ko02030,map02020,map02030
Hectar predicted targeting categoryother localisation
Exons1
Evalue1e-08
EggNOG OGsCOG0840@1|root,COG2770@1|root,COG0840@2|Bacteria,COG2770@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,43XAV@69657|Hyphomonadaceae
DescriptionSingle cache domain 3
Cds size489
COG categoryNT
BRITEko00000,ko00001,ko02035
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186852.5866468-UTR-P-wetherbeei_contig57491:1..221683186852.5866468-UTR-P-wetherbeei_contig57491:1..22Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig57491 2..22 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186852.601119-CDS-P-wetherbeei_contig57491:22..5111683186852.601119-CDS-P-wetherbeei_contig57491:22..511Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57491 23..511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57491.1.1prot_P-wetherbeei_contig57491.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57491 23..511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57491.1.1

>prot_P-wetherbeei_contig57491.1.1 ID=prot_P-wetherbeei_contig57491.1.1|Name=mRNA_P-wetherbeei_contig57491.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
MADGKSTSTEVTTPEGRILLVRNRGMIGGGWVGSHDDITDQRHAELERAS
MQKQQDRRALIEQAIAAFRQRVEEHLHAASAGAMAMRTTAATLRATSERS
SSNAAGAVSASNEACANVETAAVAADELATSIGEIGRQLSLTTDIVQVAV
VEAKGTNNQIDAL
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mRNA from alignment at P-wetherbeei_contig57491:2..511+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57491.1.1 ID=mRNA_P-wetherbeei_contig57491.1.1|Name=mRNA_P-wetherbeei_contig57491.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig57491:2..511+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCGCCAGCTGGTCGCCGACATGGCCGACGGCAAATCGACCAGCACCGA GGTGACGACGCCCGAAGGCCGCATCCTGCTGGTTCGCAATCGCGGCATGA TCGGCGGCGGCTGGGTCGGCAGCCATGACGACATCACCGATCAGCGCCAC GCCGAACTCGAACGCGCGTCCATGCAGAAGCAGCAGGACCGGCGCGCCTT GATCGAGCAGGCGATCGCCGCGTTCCGCCAGCGCGTCGAGGAACATCTGC ATGCGGCAAGCGCCGGCGCCATGGCGATGCGCACCACCGCGGCGACATTG CGCGCCACCTCCGAACGCAGTTCGTCGAACGCCGCCGGCGCGGTGTCGGC GTCGAACGAGGCCTGCGCCAATGTCGAGACCGCCGCCGTCGCCGCCGACG AACTGGCGACGTCGATCGGCGAAATCGGCCGCCAGCTTTCCTTGACCACC GACATCGTGCAGGTCGCGGTCGTCGAAGCGAAAGGCACCAACAACCAGAT CGACGCGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57491:2..511+

>mRNA_P-wetherbeei_contig57491.1.1 ID=mRNA_P-wetherbeei_contig57491.1.1|Name=mRNA_P-wetherbeei_contig57491.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig57491:2..511+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGACGGCAAATCGACCAGCACCGAGGTGACGACGCCCGAAGGCCG
CATCCTGCTGGTTCGCAATCGCGGCATGATCGGCGGCGGCTGGGTCGGCA
GCCATGACGACATCACCGATCAGCGCCACGCCGAACTCGAACGCGCGTCC
ATGCAGAAGCAGCAGGACCGGCGCGCCTTGATCGAGCAGGCGATCGCCGC
GTTCCGCCAGCGCGTCGAGGAACATCTGCATGCGGCAAGCGCCGGCGCCA
TGGCGATGCGCACCACCGCGGCGACATTGCGCGCCACCTCCGAACGCAGT
TCGTCGAACGCCGCCGGCGCGGTGTCGGCGTCGAACGAGGCCTGCGCCAA
TGTCGAGACCGCCGCCGTCGCCGCCGACGAACTGGCGACGTCGATCGGCG
AAATCGGCCGCCAGCTTTCCTTGACCACCGACATCGTGCAGGTCGCGGTC
GTCGAAGCGAAAGGCACCAACAACCAGATCGACGCGCTG
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