mRNA_P-wetherbeei_contig12561.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12561.1.1
Unique NamemRNA_P-wetherbeei_contig12561.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12561.1.1 vs. uniprot
Match: D7FLN7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLN7_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 2.580e-46
Identity = 127/316 (40.19%), Postives = 168/316 (53.16%), Query Frame = 1
Query:    1 AAGGVFLSAALVHMLPESSRALDQAWSGGSTEKKPFGGLLAAMGFLLVLCIDHGIAILQHSRAVAA-----ATTATATPRLEMSVMAASREEEAGAGH-------------PMEPLTVSGWHPVSESPTATFFPRDSGARKDDVAXXXXXXXXXHGAGL--KGDGLATRLAMLAALCFHSVMEGLGVGAAQARTWGLLTAIAAHKGLAAYALGSALMELGSSGNGTLGGVLLFSSMTPLGIGIGQLLGGVGSGSGNGEADGAIANACVALASGTFLYVSLMEVLPRELADLEGGAIKLVALMMGFGAMTMVGLAIG 888
            AAGG+F S A+VHMLPESS  L+ AW     +  P+ G L + GFLLVL ID G++I  H+R+        +   T  P  E        +   G  H              + P  + G+  + +S  A       G   DD +         H  GL  +GDG+  RLA+L AL  HSVMEGLGVGA   + + LL AI  HKG+A YALG+AL++ G         +L FS+MTPLGI IG ++        + ++ GA+   CVALA+GTFLYVSLMEVLP ELA  E G  K+ +L++GF   T VG  +G
Sbjct:   53 AAGGIFFSTAMVHMLPESSETLNDAWG----DVFPWAGFLCSFGFLLVLFIDQGVSI-SHARSKKGRKGGHSLVPTEPPSAEGLNSFGQGQGVNGGSHRNTDSEDLAEVMAAISPKALLGYSAMGDSEEAVV---RGGHTNDDHSGDGDHLRGAHAHGLGEEGDGVWVRLALLLALSVHSVMEGLGVGAEATKAYDLLFAIGVHKGIAGYALGAALLQSGVHAKQVTLYILAFSAMTPLGILIGAII----QQDADNDSGGAV---CVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLVLGFLVATGVGWLVG 353          
BLAST of mRNA_P-wetherbeei_contig12561.1.1 vs. uniprot
Match: D7FLN8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLN8_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 3.550e-33
Identity = 120/360 (33.33%), Postives = 157/360 (43.61%), Query Frame = 1
Query:    1 AAGGVFLSAALVHMLPESSRALDQAWSGGSTEKKPFGGLLAAMGFLLVLCIDHGIAILQHSRAVAAATTATATPRLEMSV-----MAASREEEAGAGHPMEPLTVSGWHPVSESPTATFFPRDSGARKDDVAXXXXXXXXXHGAGLKGDGLATRLAM-----------------------------------------------------------LAALCFHSVMEGLGVGAAQARTWGLLTAIAAHKGLAAYALGSALMELGSSGNGTLGGVLLFSSMTPLGIGIGQLLGGVGSGSGNGEADGAIANACVALASGTFLYVSLMEVLPRELADLEGGAIKLVALMMGFGAMTMVGLAIG 888
            AAGGVF ++A+VHMLPESS  L+ AW     +  P+GG   A GFLL+LCID  ++I    R        +  P    SV         R    G+    +   ++     + SP A       G   + V          +G G +  G                                                                  L AL  HSVMEGLGVGA   + + LL AI  HKGLAAYALG++L++ G  G      V+ FS+MTPLGI +G L+       G  ++ GA+   CVALA+GTFLYVSLMEVLP ELA  E G  K+ +L++GF     VG  +G
Sbjct:   51 AAGGVFFASAMVHMLPESSETLNDAWG----DVFPWGGYFCAFGFLLILCIDQAVSISHARRRKGRKGGHSLVPTEPPSVDDLNRFGQRRGINGGSHRNTDSEDLAELEMAAISPKALLGSSAMGDSHEAVVRGGGTNGDRNGNGGEAGGAXXXXXXXXXXXXXXXXCPQQGLISSPSSTDSHGDEDCADHHXXXGHAXXXXXXXXXXXXXXXXXXLLALSVHSVMEGLGVGAKTTKAYNLLFAIGVHKGLAAYALGASLLQSGVYGKQVTLFVIAFSAMTPLGILLGALI----EKDGEDDSGGAV---CVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLVLGFVVSAGVGWLVG 399          
BLAST of mRNA_P-wetherbeei_contig12561.1.1 vs. uniprot
Match: A0A024TF57_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TF57_9STRA)

HSP 1 Score: 114 bits (284), Expect = 4.390e-26
Identity = 96/295 (32.54%), Postives = 139/295 (47.12%), Query Frame = 1
Query:    1 AAGGVFLSAALVHMLPESSRALDQAWSGGSTEKK-PFGGLLAAMGFLLVLCIDHGIAILQHSRAVAAATTATATPRLEMSVMAASREEEAGAGHPMEPLTVSGWHPVSESPTATFFPRDSGARKDDVAXXXXXXXXXHGAGLKGDGLATRLAMLAALCFHSVMEGLGVGAAQART-WGLLTAIAAHKGLAAYALGSALMELGSSGNGTLGGVLLFSSMTPLGIGIGQLLGGVGSGSGNGEADGAIANACVALASGTFLYVSLMEVLPRELADLEGGAIKLVALMMGFGAMTMVGL 879
            AA G+FLSA+LVHMLP+++  +     G +T    P+  ++   GFL +L ++     L H                      A ++   G+     PL V+  H   +S              D            HG           + + AAL FHS+MEGLG+GAA + + W +  AI AHK LAA AL   L++        +G +L+F+ MTPLG+G+G  L      +GN   D   +  C ALA GTFLYV  ME++P+EL D      K+VAL+  FGA +++ L
Sbjct:   44 AAAGIFLSASLVHMLPDAADNVPLLNMGCATSMCFPYAFVIYGAGFLFILLLES----LAH----------------------ALQKRFNGSPEERLPLIVNKPHIAYDS-------------SDQCVTSEVTHTHVHGLIDATSNAFVAIVVFAALSFHSLMEGLGIGAATSTSAWHIFFAIVAHKALAAMALALELIKHRVGRGRLMGSLLVFALMTPLGVGLGAFL------AGNDPNDSFASGVCTALAGGTFLYVGAMEIIPQELHDRRHLVHKVVALVSAFGAFSLLAL 293          
BLAST of mRNA_P-wetherbeei_contig12561.1.1 vs. uniprot
Match: C5KHJ5_PERM5 (Zinc-iron transporter, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KHJ5_PERM5)

HSP 1 Score: 111 bits (278), Expect = 1.210e-24
Identity = 112/335 (33.43%), Postives = 155/335 (46.27%), Query Frame = 1
Query:   10 GVFLSAALVHMLPESSRALDQAWSGGSTEKKPFGGLLA----AMGFLLVLCIDHGI-AILQHSRAVAAATTATATPRLEMSVMAA---------------------------SREEEAGAGHPMEPLTVSGWHPVSESPTATFFPRDSGARKDDVAXXXXXXXXXHGAGLKGDGLATR---------LAMLAALCFHSVMEGLGVGAAQARTWGL---LTAIAAHKGLAAYALGSALMELGSSGNGTLGGVLLFSSMTPLGIGIGQLLGGVGSGSGNGEADGAIANA-CVALASGTFLYVSLMEVLPRELADLEGGAIKLVALMMGFGAMTMVGL 879
            GV  +A L HMLP++   L   +     +   +G LLA    AM FL +LCI+  + A+L  S AV  +  A  T + +  ++                             ++EEE G   P+ P   +   PV E              K D         XX    L+   +  +         + +  AL FHSVMEGLG+G+A    W +   LTAI AHK LAA+ALG +L+E   SG       L+F++ TP    IG L G +G  SG    D A+  A C ALASGTFL VS ME++P+  A  EG   KL+A+++GFGAM  + L
Sbjct:   46 GVLFAAGLCHMLPDAVGELVDTYVDSQPQ---YGALLACTSAAMAFLFLLCIEEIVSALLPASTAVPHSEAACVTYKTQFPILPRKELVGPHGCCEDEDPNDSCCEAIDNRNAKEEEDGVVQPLLPRYHNECCPVHEHDHVHXXXGSHSTDKVDPEEPLLGQHXXXXXXLQLKHMVLKAGPCAEIGAMTLFIALSFHSVMEGLGIGSAT-HAWEVVPVLTAILAHKALAAFALGCSLVESSVSGVRYFVFSLIFAAGTP----IGALFGNIGLSSGGSAHDAAVFTAVCKALASGTFLQVSSMEIIPKVFASAEGRFWKLIAILVGFGAMATLAL 372          
BLAST of mRNA_P-wetherbeei_contig12561.1.1 vs. uniprot
Match: A0A6G0WW08_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WW08_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.500e-24
Identity = 98/293 (33.45%), Postives = 130/293 (44.37%), Query Frame = 1
Query:    4 AGGVFLSAALVHMLPESSRALDQAWSGGSTEKK-PFGGLLAAMGFLLVLCIDHGIAILQHSRAVAAATTATATPRLEMSVMAASREEEAGAGHPMEPLTVSGWHPVSESPTATFFPRDSGARKDDVAXXXXXXXXXHGAGLKGDGLATRLAMLAALCFHSVMEGLGVGAAQARTWGLLTAIAAHKGLAAYALGSALMELGSSGNGTLGGVLLFSSMTPLGIGIGQLLGGVGSGSGNGEADGAIANACVALASGTFLYVSLMEVLPRELADLEGGAIKLVALMMGFGAMTMVGL 879
            A G+FLSA+LVHMLP+++        G ST    PF  +   +GFL +L I+               TTA A  +               A   + PL V+        PT            D            HG             + AAL FHS+MEG+G+GAA    W +L AI AHK LAA AL   L +   S    L  +LLF++M+P+G+ IG  L       G G  DG  +  C ALA GTFLYV  ME++P+EL D      K  A++  F A +M+ L
Sbjct:   44 AAGIFLSASLVHMLPDAATNESLIAFGCSTAMCFPFAFVFFGLGFLAILIIE---------------TTAHAVQKYL-------------ATDELLPLIVN----TRVDPT------------DPCVEVEVTHAHVHGLVDSTANPLVAFVVFAALSFHSMMEGMGIGAASTEAWNILLAILAHKSLAAMALAMELSKHEVSRTRLLCSLLLFAAMSPIGVAIGWFLV-----QGGGAEDGLASGICTALAGGTFLYVGAMEIIPQELHDRTNLVGKCAAVISSFAAFSMLAL 287          
BLAST of mRNA_P-wetherbeei_contig12561.1.1 vs. uniprot
Match: A0A5D6YC11_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YC11_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.650e-24
Identity = 107/321 (33.33%), Postives = 153/321 (47.66%), Query Frame = 1
Query:    4 AGGVFLSAALVHMLPES--SRALDQAWSGGSTEKKPF--GGLLAAMGFLLVLCID---HGIAIL--------------QHSRAVAAATTATATPRLEMSVMAASREEEAGAGHPMEPLTVSGWHPVSESPTATFFPRDS-----GARKDDVAXXXXXXXXXHGAGL---KGDGLATRLAMLAALCFHSVMEGLGVGAAQARTWGLLTAIAAHKGLAAYALGSALMELGSSGNGTLGGVLLFSSMTPLGIGIGQLLGGVGSGSGNGEADGAIANACVALASGTFLYVSLMEVLPRELADLEGGAIKLVALMMGFGAMTMVGL 879
            AGG+FLS A++H+LP++  + AL + W   S E   F         GFLLVL ++   H    L               H    +  T A+  P    +   A+  +     H  +  ++    P +    AT    D        R+       XXXXXX   GL    G+     L + AAL FHSVMEG+G+GAA    W +L A+ AHK LAA+AL   L+         L  + +FS+MTP+GI +G ++ G  +G      +   +  C ALA GTFL+V+ +E LP+EL D    A+K  AL+ G+GAM M+ L
Sbjct:   59 AGGIFLSGAVLHLLPDAQENEALAR-WMCASEEAGCFKWANFFFGSGFLLVLLLEVFAHAELTLLVDDCQLQAQNHFRHHESCSSIETDASGAPDTAAADEDATSHDVESGAHSYK-RSLKALSPPASQYGATVVRHDKLFTPHATREQKAIAHDXXXXXXXXXGLLADSGENPLLALIVFAALSFHSVMEGMGIGAAPRAAWDVLAAVLAHKSLAAFALVQELLLHRVPRRRVLASIGMFSAMTPVGILLGSMVAGAATG------ESVASGVCTALAGGTFLFVAAVETLPQELQDRRNLALKCGALLAGYGAMGMLSL 371          
BLAST of mRNA_P-wetherbeei_contig12561.1.1 vs. uniprot
Match: W4GRK3_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GRK3_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.240e-23
Identity = 93/295 (31.53%), Postives = 138/295 (46.78%), Query Frame = 1
Query:    1 AAGGVFLSAALVHMLPESSRALDQAWSGGSTEKK-PFGGLLAAMGFLLVLCIDHGIAILQHSRAVAAATTATATPRLEMSVMAASREEEAGAGHPMEPLTVSGWHPVSESPTATFFPRDSGARKDDVAXXXXXXXXXHGAGLKGDGLATRLAMLAALCFHSVMEGLGVGAAQA-RTWGLLTAIAAHKGLAAYALGSALMELGSSGNGTLGGVLLFSSMTPLGIGIGQLLGGVGSGSGNGEADGAIANACVALASGTFLYVSLMEVLPRELADLEGGAIKLVALMMGFGAMTMVGL 879
            AA G+FLSA+LVHMLP++++       G +     P+  ++ A+GFLL+L I+                          S+  A +E   G+     PL V+  H ++  P             D            HG           + + AAL FHS++EGLG+GAA +   W +  AI AHK LAA AL   L++        +G + +F+SMTPLG+ +G  L      +G+  +D      C ALA GTFLYV  ME++P+EL D      K  A++  FGA +++ L
Sbjct:   45 AAAGIFLSASLVHMLPDAAKNAPLLELGCTQFMCFPYAFIIFAVGFLLILLIE--------------------------SMAHALQERLHGSADERLPLLVNAPH-IAHDPA------------DPCVKVEVTHAHMHGLIDTSSNPFLAIVVFAALSFHSLVEGLGIGAATSTNAWQIFFAIVAHKALAAMALSLELVKHQVQRPRLIGSLFVFASMTPLGVMLGAAL------AGDDPSDSLAGGVCTALAGGTFLYVGAMEIIPQELHDRRHLLQKCAAMVGAFGAFSLLAL 294          
BLAST of mRNA_P-wetherbeei_contig12561.1.1 vs. uniprot
Match: A0A2D4BK12_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK12_PYTIN)

HSP 1 Score: 107 bits (268), Expect = 1.780e-23
Identity = 92/295 (31.19%), Postives = 143/295 (48.47%), Query Frame = 1
Query:    4 AGGVFLSAALVHMLP--ESSRALDQAWSGGSTEKKPFGGLLAAMGFLLVLCIDHGIAILQHSRAVAAATTAT-----ATPRLEMSVMAASREEEAGAGHPMEPLTVSGWHPVSESPTATFFPRDSGARKDDVAXXXXXXXXXHGAGLKGDGLATRLAMLAALCFHSVMEGLGVGAAQARTWGLLTAIAAHKGLAAYALGSALMELGSSGNGTLGGVLLFSSMTPLGIGIGQLLGGVGSGSGNGEADGAIANACVALASGTFLYVSLMEVLPRELA---DLEGGAIKLVA--LMMG 852
            AGG+FL+ + +H+LP  E +RAL +     S +         A+GFL++L ++     +Q     A  TTA      AT R  +S  +          +     T   W  V +  T +     +    D+           H  G+  +       +  AL FHSVMEG+G+GAA+   W +  AI AHK LAA+AL   L+    +    +  + ++S+MTPLGI +G LL      +G+ + + A +  C ALA GTFL+V++ E++P+EL+   DL G +  LV   L+MG
Sbjct:   46 AGGIFLAGSCLHLLPDAEENRALAEMGCLASGKCLHLAHFFFALGFLVILXLEVFATAMQRRFGHALGTTAACHTEAATERTPLSAPSDHHHXXXXGHNGYSAATDVSWRLVDQHGTVSACGDSAVVSVDE----RHSDVHTHFEGIMDENPILAFVVFVALSFHSVMEGMGIGAAKGAAWDIFIAILAHKALAAFALSLELLHHKVARERLVTTLAVYSTMTPLGILLGSLL------AGSAQGESAASGICSALAGGTFLFVAVSEIIPQELSRGTDLVGQSAALVTGFLLMG 330          
BLAST of mRNA_P-wetherbeei_contig12561.1.1 vs. uniprot
Match: A0A1V9YDA1_9STRA (Zinc (Zn2)-Iron (Fe2) Permease (ZIP) Family n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YDA1_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.940e-23
Identity = 89/294 (30.27%), Postives = 137/294 (46.60%), Query Frame = 1
Query:    4 AGGVFLSAALVHMLPESSRALDQAWSGGSTEKK--PFGGLLAAMGFLLVLCIDHGIAILQHSRAVAAATTATATPRLEMSVMAASREEEAGAGHPMEPLTVSGWHPVSESPTATFFPRDSGARKDDVAXXXXXXXXXHGAGLKGDGLATRLAMLAALCFHSVMEGLGVGAAQARTWGLLTAIAAHKGLAAYALGSALMELGSSGNGTLGGVLLFSSMTPLGIGIGQLLGGVGSGSGNGEADGAIANACVALASGTFLYVSLMEVLPRELADLEGGAIKLVALMMGFGAMTMVGL 879
            AGGVFL+ + VH+LP++      A  G  ++    P    L  +GF+++L ++ G     H+       ++ ++P L                    PLTVS   P  ++ T        GA    +            A    +       +  AL FHS+MEG+G+GAA    W LL AI AHK LAA AL   ++         +  +L+F++M+P+G+G+G ++      SG+  AD   +  C ALA GTFLYV  MEVLP EL + +    KL A ++ F   +++ L
Sbjct:    3 AGGVFLAGSFVHLLPDALANAPLAELGCDSQAHCFPLAFFLYGVGFVIILLVEVGA----HAAKDQLLRSSVSSPELL-------------------PLTVS--VPTDKNRTC------HGANTAHM-------HTNEDASENDNPTVVAATVFVALSFHSLMEGIGIGAAPQNAWSLLLAIVAHKSLAAMALALEMLHHAVPPKKIVAVILVFAAMSPIGVGVGYIV------SGSSPADSLASGVCTALAGGTFLYVGAMEVLPEELRNKKHMLAKLAAFVLSFILFSILAL 252          
BLAST of mRNA_P-wetherbeei_contig12561.1.1 vs. uniprot
Match: A0A835VTT3_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835VTT3_CHLIN)

HSP 1 Score: 106 bits (264), Expect = 8.840e-23
Identity = 69/156 (44.23%), Postives = 101/156 (64.74%), Query Frame = 1
Query:  412 GAGLKGDGLATRLAMLAALCFHSVMEGLGVGA--AQARTWGLLTAIAAHKGLAAYALGSALMELGSSGNGTLGGVLLFSSMTPLGIGIGQLLGGVGSGSGNGEADGAIANACVALASGTFLYVSLMEVLPRELADLEGGAIKLVALMMGFGAMTMV 873
            GAG +    AT + + AALC HS++EG+ +GA  +   T  ++ AIAAHKGLAAYALG++++E G+S       +  F++ TPLGIGIG  L    S S N     A++    ALASGTFLYV+ MEV+P+ELAD +   +K+   ++G+G M+++
Sbjct:  205 GAGGRKLSFATAVLLAAALCIHSILEGMALGAQVSMRSTEDIMVAIAAHKGLAAYALGASIVESGASSARFWTVIGCFAAATPLGIGIGYGL----SSSANSRPGAALS----ALASGTFLYVAFMEVIPKELADGKHRLLKMGVFLLGYGLMSLL 352          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12561.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLN7_ECTSI2.580e-4640.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FLN8_ECTSI3.550e-3333.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A024TF57_9STRA4.390e-2632.54Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
C5KHJ5_PERM51.210e-2433.43Zinc-iron transporter, putative n=1 Tax=Perkinsus ... [more]
A0A6G0WW08_9STRA1.500e-2433.45Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A5D6YC11_9STRA1.650e-2433.33Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
W4GRK3_9STRA1.240e-2331.53Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]
A0A2D4BK12_PYTIN1.780e-2331.19Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A1V9YDA1_9STRA3.940e-2330.27Zinc (Zn2)-Iron (Fe2) Permease (ZIP) Family n=1 Ta... [more]
A0A835VTT3_CHLIN8.840e-2344.23Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12561contigP-wetherbeei_contig12561:154..1904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FLN7
PFAMsZip
Model size891
Max annot lvl2759|Eukaryota
KEGG koko:K14709
KEGG TC2.A.5.1,2.A.5.3,2.A.5.6
Hectar predicted targeting categorysignal peptide
Exons4
Evalue4.22e-47
EggNOG OGsKOG1558@1|root,KOG1558@2759|Eukaryota
Descriptionzinc ion transmembrane transporter activity
Cds size891
COG categoryU
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185952.9423866-CDS-P-wetherbeei_contig12561:153..4181683185952.9423866-CDS-P-wetherbeei_contig12561:153..418Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12561 154..418 -
1683185952.952733-CDS-P-wetherbeei_contig12561:493..5641683185952.952733-CDS-P-wetherbeei_contig12561:493..564Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12561 494..564 -
1683185952.9617136-CDS-P-wetherbeei_contig12561:1019..11331683185952.9617136-CDS-P-wetherbeei_contig12561:1019..1133Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12561 1020..1133 -
1683185952.9709873-CDS-P-wetherbeei_contig12561:1463..19041683185952.9709873-CDS-P-wetherbeei_contig12561:1463..1904Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12561 1464..1904 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12561.1.1prot_P-wetherbeei_contig12561.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12561 154..1904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12561.1.1

>prot_P-wetherbeei_contig12561.1.1 ID=prot_P-wetherbeei_contig12561.1.1|Name=mRNA_P-wetherbeei_contig12561.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=297bp
AAGGVFLSAALVHMLPESSRALDQAWSGGSTEKKPFGGLLAAMGFLLVLC
IDHGIAILQHSRAVAAATTATATPRLEMSVMAASREEEAGAGHPMEPLTV
SGWHPVSESPTATFFPRDSGARKDDVAAAGYHHHHYHGAGLKGDGLATRL
AMLAALCFHSVMEGLGVGAAQARTWGLLTAIAAHKGLAAYALGSALMELG
SSGNGTLGGVLLFSSMTPLGIGIGQLLGGVGSGSGNGEADGAIANACVAL
ASGTFLYVSLMEVLPRELADLEGGAIKLVALMMGFGAMTMVGLAIG*
back to top

mRNA from alignment at P-wetherbeei_contig12561:154..1904-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12561.1.1 ID=mRNA_P-wetherbeei_contig12561.1.1|Name=mRNA_P-wetherbeei_contig12561.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1751bp|location=Sequence derived from alignment at P-wetherbeei_contig12561:154..1904- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCCGGAGGTGTCTTTTTGTCGGCGGCGCTGGTGCACATGCTTCCCGA GAGCTCGAGGGCGCTGGACCAAGCGTGGTCTGGCGGGAGCACCGAGAAAA AGCCGTTTGGGGGGCTGCTCGCGGCAATGGGCTTCCTCCTGGTGCTCTGC ATCGACCACGGCATCGCTATTCTGCAGCACAGCCGGGCCGTTGCCGCCGC CACCACCGCCACGGCGACGCCTCGCCTGGAAATGTCGGTTATGGCCGCTT CTCGGGAAGAGGAGGCGGGCGCAGGTCACCCGATGGAACCGTTAACAGTG TCGGGCTGGCATCCGGTCTCCGAGAGCCCCACTGCTACGTTCTTTCCCCG GGACAGTGGCGCTAGGAAAGACGACGTCGCCGCAGCCGGGTACCATCACC ACCACTATCACGGCGCTGGGCTGAAAGGGGACGGACTGGCGGTGAGTAGT GGATTTGTGTTTTTCTTTGACTTTGTGCACTGTGATAACTTCATCGCTGG TGTCATTTCTCCGTTTTTGTCTTTTAACGCGTTTCAGCCCACTATAATTG AGAGAGCTCTGACAGTGGTTTCGTGGAACGAGGCTATGCTTTCTCCTCTC GCACTCGCGTTCTATCGCCGTGAATAATACGGAGTGGTGCGCGGTGCGCA TTCCATCGTCTCCCTGACTGAACTCCAAATAGCCTCTCTGGGCCATGACG AGCAGAACTCTGAATGAAACTCTGTTTCCTTCCACGGGTCTCAAACACTC CTGTTTTCCTGCTTTCTTTAGACGCGGCTGGCAATGCTGGCTGCGCTGTG CTTCCATTCCGTCATGGAGGGGCTTGGTGTCGGCGCGGCGCAGGCGAGAA CGTGGGGGCTCCTGACCGCCATCGCCGCGCACAAGGTGAAAGGAGCAAAT TGAAGAGGGAATTAGAAGGACTTGAGTTCGGACAACAGCTACCGTCCACG TATCTTCTTGAGGAGAAGAGGAATTGAGGACGAACGACAAGAATTCCGGT TACAGCGTGGCCTTCTGCCGTGCACCTTGGGCAGTTAGAGGGGAAACGCT ACTGCTGCAACTGCTATGCCTTTTTTGACCCGGAGCCAGCTTGCATGCGG TTGCATGAAACGGGTTTGCATGGCATTGCTACACGTTGCCACGGCAACAC GGTGTCCTTGATGCTCGAGTACTTCTCTCTGCTCGGCGTCGTTATTCTTT GGGCGCCTCTGCCGTGTCTGTTTCCACTCTTTAGAGGTAGCTAAGAAACT ACCCACGAGGGCTCGCGAGAAAATGTTCCGTTAACTAACCAACCCTTCCT TTCGCCGGCCGGCGGCATTCCAAAACATACTTCGCCACAGGGTCTAGCGG CCTACGCACTGGGCTCGGCACTGATGGAGCTCGGCAGCAGCGGCAACGGG ACGCTGGGCGGGTCCACGCCGGCGGCCAAAAGCGGGAGACAACGCCGCGC CTCGCCGTCTCCGGCGAGAACAGCCTACTACAGCAGCGTGCTCCTATTTT CGAGCATGACGCCACTGGGCATCGGAATCGGGCAGCTGCTGGGCGGTGTT GGGAGCGGCAGCGGCAATGGTGAGGCCGATGGCGCCATTGCAAATGCCTG CGTGGCGCTGGCGTCCGGCACCTTCCTCTACGTGAGTTTGATGGAGGTTC TGCCGCGCGAGCTGGCCGATTTAGAAGGCGGGGCGATCAAATTGGTGGCG CTGATGATGGGTTTTGGTGCAATGACCATGGTTGGGCTCGCTATCGGATA G
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig12561:154..1904-

>mRNA_P-wetherbeei_contig12561.1.1 ID=mRNA_P-wetherbeei_contig12561.1.1|Name=mRNA_P-wetherbeei_contig12561.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=891bp|location=Sequence derived from alignment at P-wetherbeei_contig12561:154..1904- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCCGGAGGTGTCTTTTTGTCGGCGGCGCTGGTGCACATGCTTCCCGA
GAGCTCGAGGGCGCTGGACCAAGCGTGGTCTGGCGGGAGCACCGAGAAAA
AGCCGTTTGGGGGGCTGCTCGCGGCAATGGGCTTCCTCCTGGTGCTCTGC
ATCGACCACGGCATCGCTATTCTGCAGCACAGCCGGGCCGTTGCCGCCGC
CACCACCGCCACGGCGACGCCTCGCCTGGAAATGTCGGTTATGGCCGCTT
CTCGGGAAGAGGAGGCGGGCGCAGGTCACCCGATGGAACCGTTAACAGTG
TCGGGCTGGCATCCGGTCTCCGAGAGCCCCACTGCTACGTTCTTTCCCCG
GGACAGTGGCGCTAGGAAAGACGACGTCGCCGCAGCCGGGTACCATCACC
ACCACTATCACGGCGCTGGGCTGAAAGGGGACGGACTGGCGACGCGGCTG
GCAATGCTGGCTGCGCTGTGCTTCCATTCCGTCATGGAGGGGCTTGGTGT
CGGCGCGGCGCAGGCGAGAACGTGGGGGCTCCTGACCGCCATCGCCGCGC
ACAAGGGTCTAGCGGCCTACGCACTGGGCTCGGCACTGATGGAGCTCGGC
AGCAGCGGCAACGGGACGCTGGGCGGCGTGCTCCTATTTTCGAGCATGAC
GCCACTGGGCATCGGAATCGGGCAGCTGCTGGGCGGTGTTGGGAGCGGCA
GCGGCAATGGTGAGGCCGATGGCGCCATTGCAAATGCCTGCGTGGCGCTG
GCGTCCGGCACCTTCCTCTACGTGAGTTTGATGGAGGTTCTGCCGCGCGA
GCTGGCCGATTTAGAAGGCGGGGCGATCAAATTGGTGGCGCTGATGATGG
GTTTTGGTGCAATGACCATGGTTGGGCTCGCTATCGGATAG
back to top