mRNA_P-wetherbeei_contig57447.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57447.1.1
Unique NamemRNA_P-wetherbeei_contig57447.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57447.1.1 vs. uniprot
Match: A0A845BDP4_9PROT (ABC transporter substrate-binding protein n=1 Tax=Roseomonas coralli TaxID=2545983 RepID=A0A845BDP4_9PROT)

HSP 1 Score: 164 bits (415), Expect = 5.060e-45
Identity = 73/124 (58.87%), Postives = 91/124 (73.39%), Query Frame = 1
Query:    1 ESLFLYALPVLPVDPQSSFGGAAYAQWFASNGAIGIKPTDAALLKGFEMFRSATNKPAEMRNEVAKELWKLLVDEVWSIGLVGQSPAYMGTRVVNERLENVPARTCVSQHCRTPWSGHPEQWFY 372
            E+L+L+   VLPVDP       AYA W+ASNGA G +P +  + + F + R+AT++    RNE AKE+WKL VD+ W IGLVG SPA+MG RVVN +LENVPART +SQHCRTPW GHPEQWF+
Sbjct:  549 ENLYLFPRYVLPVDPLGGVMSNAYAAWYASNGAQGKQPAEPEMQRAFALMRAATSQKEAERNETAKEIWKLAVDQQWGIGLVGLSPAFMGVRVVNRKLENVPARTAISQHCRTPWGGHPEQWFF 672          
BLAST of mRNA_P-wetherbeei_contig57447.1.1 vs. uniprot
Match: UPI00192E1A3F (ABC transporter substrate-binding protein n=2 Tax=Belnapia TaxID=365532 RepID=UPI00192E1A3F)

HSP 1 Score: 164 bits (415), Expect = 5.060e-45
Identity = 74/125 (59.20%), Postives = 91/125 (72.80%), Query Frame = 1
Query:    1 ESLFLYALPVLPVDPQSSFGGAAYAQWFASNGAIGIKPTDAALLKGFEMFRSATNKPAEMRNEVAKELWKLLVDEVWSIGLVGQSPAYMGTRVVNERLENVPARTCVSQHCRTPWSGHPEQWFYK 375
            ESL+LY    LPVDP +   G  YA WFASNG  GI+P +  +LK F++ R+AT +  E RN  A+E+WKL VD+ W IGLVG SPA+MG RVV+ERLENVP RT +SQH RTPW  HPEQW++K
Sbjct:  549 ESLYLYPRYCLPVDPTAGVMGNGYALWFASNGERGIRPAEPEMLKAFDLMRAATGQREEERNRTAQEIWKLAVDQQWGIGLVGLSPAFMGVRVVSERLENVPGRTGISQHIRTPWGAHPEQWYFK 673          
BLAST of mRNA_P-wetherbeei_contig57447.1.1 vs. uniprot
Match: UPI001C2C076D (ABC transporter substrate-binding protein n=1 Tax=Siccirubricoccus sp. G192 TaxID=2849651 RepID=UPI001C2C076D)

HSP 1 Score: 163 bits (413), Expect = 9.630e-45
Identity = 74/125 (59.20%), Postives = 92/125 (73.60%), Query Frame = 1
Query:    1 ESLFLYALPVLPVDPQSSFGGAAYAQWFASNGAIGIKPTDAALLKGFEMFRSATNKPAEMRNEVAKELWKLLVDEVWSIGLVGQSPAYMGTRVVNERLENVPARTCVSQHCRTPWSGHPEQWFYK 375
            ESL+LY    LPVDP +   G AYA WFAS GA G KP +  +L+ FE+ R+AT +  E RN  A+E+WKL V++ W IGLVG SPA+MG RVV+E+LENVPART +SQH RTPW  HPEQW++K
Sbjct:  548 ESLYLYPRYTLPVDPTAGVMGNAYALWFASGGARGTKPEEPEMLRAFELMRAATGQREEERNRTAQEIWKLAVEQQWGIGLVGLSPAFMGVRVVSEKLENVPARTGISQHIRTPWGAHPEQWYFK 672          
BLAST of mRNA_P-wetherbeei_contig57447.1.1 vs. uniprot
Match: UPI001BCECDAA (ABC transporter substrate-binding protein n=1 Tax=Roseococcus sp. XZZS9 TaxID=2835040 RepID=UPI001BCECDAA)

HSP 1 Score: 162 bits (411), Expect = 1.880e-44
Identity = 73/125 (58.40%), Postives = 92/125 (73.60%), Query Frame = 1
Query:    1 ESLFLYALPVLPVDPQSSFGGAAYAQWFASNGAIGIKPTDAALLKGFEMFRSATNKPAEMRNEVAKELWKLLVDEVWSIGLVGQSPAYMGTRVVNERLENVPARTCVSQHCRTPWSGHPEQWFYK 375
            ESL+LY    LPVDP  +     Y+ W+ASNGA G  PTD  LL+ +E+ RSA+ +  E RN+ AKE+WK+ VDE W IGLVG SPA+MG RVV+E+LENVPART +SQHCRTPW   P+QW++K
Sbjct:  549 ESLYLYPRYTLPVDPIGAVISNVYSHWYASNGARGEAPTDPKLLRAYELMRSASGQRQEERNQTAKEVWKIAVDEQWGIGLVGLSPAFMGVRVVSEKLENVPARTGISQHCRTPWGARPDQWYFK 673          
BLAST of mRNA_P-wetherbeei_contig57447.1.1 vs. uniprot
Match: A0A848EJW1_9PROT (ABC transporter substrate-binding protein n=4 Tax=Roseomonas TaxID=125216 RepID=A0A848EJW1_9PROT)

HSP 1 Score: 162 bits (411), Expect = 1.910e-44
Identity = 74/125 (59.20%), Postives = 91/125 (72.80%), Query Frame = 1
Query:    1 ESLFLYALPVLPVDPQSSFGGAAYAQWFASNGAIGIKPTDAALLKGFEMFRSATNKPAEMRNEVAKELWKLLVDEVWSIGLVGQSPAYMGTRVVNERLENVPARTCVSQHCRTPWSGHPEQWFYK 375
            ESL+LY    LPVDP +   G A+A WFASNG  G  PT+  +L+ F++ R+A  +    R + AKE+WKL V++ W IGLVG SPA+MG RVVNERLENVPART VSQH RTPW GHPEQW++K
Sbjct:  551 ESLYLYPRYALPVDPTAGVMGNAHALWFASNGERGTAPTEPEMLRAFQLMRAAAGQKLAERTQTAKEIWKLAVEQQWGIGLVGLSPAFMGVRVVNERLENVPARTGVSQHIRTPWGGHPEQWYFK 675          
BLAST of mRNA_P-wetherbeei_contig57447.1.1 vs. uniprot
Match: UPI001BAC3138 (ABC transporter substrate-binding protein n=2 Tax=Roseomonas hellenica TaxID=2687306 RepID=UPI001BAC3138)

HSP 1 Score: 162 bits (410), Expect = 2.580e-44
Identity = 72/125 (57.60%), Postives = 89/125 (71.20%), Query Frame = 1
Query:    1 ESLFLYALPVLPVDPQSSFGGAAYAQWFASNGAIGIKPTDAALLKGFEMFRSATNKPAEMRNEVAKELWKLLVDEVWSIGLVGQSPAYMGTRVVNERLENVPARTCVSQHCRTPWSGHPEQWFYK 375
            ESL+LY   VLPVDP        YA W+ASNGA G  P D  +++ + + R+AT +    RNE AKE+WK+ VD+ W IGLVG SPA+MG RVV+ERLENVP RT +SQHCRTPW  HPEQW++K
Sbjct:  548 ESLYLYPRYVLPVDPIGGVMSNVYAAWYASNGARGSPPPDPEMMRAYTLMRAATGQQQAQRNETAKEVWKIAVDQQWGIGLVGLSPAFMGVRVVSERLENVPGRTGISQHCRTPWGAHPEQWYFK 672          
BLAST of mRNA_P-wetherbeei_contig57447.1.1 vs. uniprot
Match: UPI00166824F2 (ABC transporter substrate-binding protein n=1 Tax=Roseomonas lacus TaxID=287609 RepID=UPI00166824F2)

HSP 1 Score: 160 bits (406), Expect = 9.540e-44
Identity = 73/125 (58.40%), Postives = 88/125 (70.40%), Query Frame = 1
Query:    1 ESLFLYALPVLPVDPQSSFGGAAYAQWFASNGAIGIKPTDAALLKGFEMFRSATNKPAEMRNEVAKELWKLLVDEVWSIGLVGQSPAYMGTRVVNERLENVPARTCVSQHCRTPWSGHPEQWFYK 375
            ESL+LY   VLPVDP        YA WFASNG  G +P D  + + F + R+AT +    R+  AKE+WK+ VD+ W IGLVG SPA+MG RVVNERLENVP RT +SQHCRTPW GHPEQW++K
Sbjct:  549 ESLYLYPRYVLPVDPIGGVISNVYAAWFASNGERGSEPPDPEMRRAFALMRAATGQQKAERDATAKEVWKIAVDQQWGIGLVGLSPAFMGVRVVNERLENVPGRTGISQHCRTPWGGHPEQWYFK 673          
BLAST of mRNA_P-wetherbeei_contig57447.1.1 vs. uniprot
Match: UPI000E768785 (ABC transporter substrate-binding protein n=2 Tax=Roseomonas vastitatis TaxID=2307076 RepID=UPI000E768785)

HSP 1 Score: 160 bits (405), Expect = 1.300e-43
Identity = 70/124 (56.45%), Postives = 89/124 (71.77%), Query Frame = 1
Query:    1 ESLFLYALPVLPVDPQSSFGGAAYAQWFASNGAIGIKPTDAALLKGFEMFRSATNKPAEMRNEVAKELWKLLVDEVWSIGLVGQSPAYMGTRVVNERLENVPARTCVSQHCRTPWSGHPEQWFY 372
            ESL+L+    LPVDP       AYA W+ SNG  G  P +  + + FE+ R+AT++  E RNE AKE+WKL+V++ W IGLVG SPA+MG RVVN  L+NVPART +SQHCRTPW GHPEQW++
Sbjct:  548 ESLYLFPRYALPVDPLGGVISNAYAAWYGSNGERGQAPAEPEMRRAFELMRAATSQKQEQRNETAKEIWKLVVEQQWGIGLVGLSPAFMGVRVVNRTLQNVPARTAISQHCRTPWGGHPEQWYF 671          
BLAST of mRNA_P-wetherbeei_contig57447.1.1 vs. uniprot
Match: A0A8J2UYF8_9PROT (Peptide ABC transporter substrate-binding protein n=1 Tax=Siccirubricoccus deserti TaxID=2013562 RepID=A0A8J2UYF8_9PROT)

HSP 1 Score: 160 bits (404), Expect = 1.890e-43
Identity = 73/125 (58.40%), Postives = 90/125 (72.00%), Query Frame = 1
Query:    1 ESLFLYALPVLPVDPQSSFGGAAYAQWFASNGAIGIKPTDAALLKGFEMFRSATNKPAEMRNEVAKELWKLLVDEVWSIGLVGQSPAYMGTRVVNERLENVPARTCVSQHCRTPWSGHPEQWFYK 375
            ESL+LY    LPVDP +   G AYA WFASNG  G KP +  +L+GFE+ R+A  +    R   A+E+WKL V++ W IGLVG SPA+MG RVV+ERLENVPART +SQH RTPW  HPEQW++K
Sbjct:  553 ESLYLYPRYTLPVDPTAGVMGNAYALWFASNGERGTKPVEPEMLRGFELMRAAAGQREAERVATAREIWKLAVEQQWGIGLVGLSPAFMGVRVVSERLENVPARTGISQHIRTPWGAHPEQWYFK 677          
BLAST of mRNA_P-wetherbeei_contig57447.1.1 vs. uniprot
Match: A0A1E4LSN6_9PROT (SBP_bac_5 domain-containing protein n=1 Tax=Acetobacteraceae bacterium SCN 69-10 TaxID=1660159 RepID=A0A1E4LSN6_9PROT)

HSP 1 Score: 143 bits (360), Expect = 7.870e-39
Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 1
Query:    1 ESLFLYALPVLPVDPQSSFGGAAYAQWFASNGAIGIKPTDAALLKGFEMFRSATNKPAEMRNEVAKELWKLLVDEVWSIGLVGQSPAYMGTRVVNERLENVPARTCVSQHCRTPWSGHPEQWFYK 375
            E L+LY    LPVD      G  YA+W+ASNGA+G KP D  LL+  E  R+A       RN+ A+E+WK++VD+ + IG VGQSPA MG R+ + RL N+P R C++QHCRTP S HPE WFYK
Sbjct:  254 ELLYLYPSWALPVDVSQGAYGLDYAKWYASNGALGKKPEDPLLLEALEKLRAAAGMQEAERNKNAQEIWKIMVDQQFHIGTVGQSPALMGVRLASRRLANIPGRACIAQHCRTPGSSHPETWFYK 378          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57447.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A845BDP4_9PROT5.060e-4558.87ABC transporter substrate-binding protein n=1 Tax=... [more]
UPI00192E1A3F5.060e-4559.20ABC transporter substrate-binding protein n=2 Tax=... [more]
UPI001C2C076D9.630e-4559.20ABC transporter substrate-binding protein n=1 Tax=... [more]
UPI001BCECDAA1.880e-4458.40ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A848EJW1_9PROT1.910e-4459.20ABC transporter substrate-binding protein n=4 Tax=... [more]
UPI001BAC31382.580e-4457.60ABC transporter substrate-binding protein n=2 Tax=... [more]
UPI00166824F29.540e-4458.40ABC transporter substrate-binding protein n=1 Tax=... [more]
UPI000E7687851.300e-4356.45ABC transporter substrate-binding protein n=2 Tax=... [more]
A0A8J2UYF8_9PROT1.890e-4358.40Peptide ABC transporter substrate-binding protein ... [more]
A0A1E4LSN6_9PROT7.870e-3952.00SBP_bac_5 domain-containing protein n=1 Tax=Acetob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57447contigP-wetherbeei_contig57447:134..511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1380394.JADL01000001_gene2217
PFAMsSBP_bac_5
Model size378
Max annot lvl204441|Rhodospirillales
KEGG koko:K02035
KEGG TC3.A.1.5
KEGG Pathwayko02024,map02024
KEGG ModuleM00239
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.17e-42
EggNOG OGsCOG0747@1|root,COG0747@2|Bacteria,1MU3P@1224|Proteobacteria,2TT4M@28211|Alphaproteobacteria,2JQRE@204441|Rhodospirillales
DescriptionBacterial extracellular solute-binding proteins, family 5 Middle
Cds size378
COG categoryE
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186851.9914522-CDS-P-wetherbeei_contig57447:133..5111683186851.9914522-CDS-P-wetherbeei_contig57447:133..511Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57447 134..511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57447.1.1prot_P-wetherbeei_contig57447.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57447 134..511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57447.1.1

>prot_P-wetherbeei_contig57447.1.1 ID=prot_P-wetherbeei_contig57447.1.1|Name=mRNA_P-wetherbeei_contig57447.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
ESLFLYALPVLPVDPQSSFGGAAYAQWFASNGAIGIKPTDAALLKGFEMF
RSATNKPAEMRNEVAKELWKLLVDEVWSIGLVGQSPAYMGTRVVNERLEN
VPARTCVSQHCRTPWSGHPEQWFYK*
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mRNA from alignment at P-wetherbeei_contig57447:134..511-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57447.1.1 ID=mRNA_P-wetherbeei_contig57447.1.1|Name=mRNA_P-wetherbeei_contig57447.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig57447:134..511- (Phaeothamnion wetherbeei SAG_119_79)
GAGAGCTTGTTCCTGTATGCCTTGCCGGTGCTGCCGGTCGATCCGCAGTC GAGCTTCGGCGGCGCCGCGTATGCGCAATGGTTTGCCAGCAATGGCGCCA TCGGTATCAAGCCGACCGATGCGGCGCTGCTGAAGGGTTTCGAGATGTTC CGCTCTGCGACGAACAAGCCGGCAGAAATGCGCAACGAGGTCGCGAAGGA GCTCTGGAAACTGCTGGTCGATGAAGTGTGGTCGATCGGCCTGGTCGGCC AGTCGCCGGCCTATATGGGCACGCGTGTCGTCAACGAACGGCTCGAGAAC GTTCCTGCTCGTACCTGCGTGTCGCAGCATTGCCGCACGCCCTGGAGCGG CCACCCGGAGCAATGGTTCTACAAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57447:134..511-

>mRNA_P-wetherbeei_contig57447.1.1 ID=mRNA_P-wetherbeei_contig57447.1.1|Name=mRNA_P-wetherbeei_contig57447.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig57447:134..511- (Phaeothamnion wetherbeei SAG_119_79)
GAGAGCTTGTTCCTGTATGCCTTGCCGGTGCTGCCGGTCGATCCGCAGTC
GAGCTTCGGCGGCGCCGCGTATGCGCAATGGTTTGCCAGCAATGGCGCCA
TCGGTATCAAGCCGACCGATGCGGCGCTGCTGAAGGGTTTCGAGATGTTC
CGCTCTGCGACGAACAAGCCGGCAGAAATGCGCAACGAGGTCGCGAAGGA
GCTCTGGAAACTGCTGGTCGATGAAGTGTGGTCGATCGGCCTGGTCGGCC
AGTCGCCGGCCTATATGGGCACGCGTGTCGTCAACGAACGGCTCGAGAAC
GTTCCTGCTCGTACCTGCGTGTCGCAGCATTGCCGCACGCCCTGGAGCGG
CCACCCGGAGCAATGGTTCTACAAGTAG
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