mRNA_P-wetherbeei_contig57417.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57417.1.1
Unique NamemRNA_P-wetherbeei_contig57417.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57417.1.1 vs. uniprot
Match: S9P8J0_9DELT (NAD/NADP octopine/nopaline dehydrogenase n=2 Tax=Cystobacter fuscus TaxID=43 RepID=S9P8J0_9DELT)

HSP 1 Score: 108 bits (270), Expect = 9.500e-26
Identity = 58/132 (43.94%), Postives = 86/132 (65.15%), Query Frame = 1
Query:    1 EEIAIIGSGNSAHALACYLSSQGHRIHLWARNLEKLKHVIGPKKIFARGVLEGIFPVETISDDPAAVLSRCTTVFVATTTNPYAEIAQRLSPHLRAGQRVVLFSSKFGGSQDFSYSL---GRKDMRVIETAA 387
            E I +IGSGN+A ALA YLS QGH + ++ R+ EKL  +     I A G+LEG+FP+E ++++P  +  +C T+FVA+ T  Y ++A  L+PHLR    +VLFSSK  GS + + +L   G + + +IET A
Sbjct:    4 ERIGVIGSGNTARALAAYLSHQGHSVCVYTRHPEKLDTIRRRGHIEATGLLEGMFPIEEVTNEPERLARQCGTLFVASVTTAYLDVAATLAPHLREHHALVLFSSKLCGSLEMTRALHGHGVQGVPIIETDA 135          
BLAST of mRNA_P-wetherbeei_contig57417.1.1 vs. uniprot
Match: A0A1H5QJT0_9PSEU (Opine dehydrogenase n=8 Tax=Amycolatopsis TaxID=1813 RepID=A0A1H5QJT0_9PSEU)

HSP 1 Score: 107 bits (267), Expect = 2.930e-25
Identity = 59/130 (45.38%), Postives = 84/130 (64.62%), Query Frame = 1
Query:    7 IAIIGSGNSAHALACYLSSQGHRIHLWARNLEKLKHVIGPKKIFARGVLEGIFPVETISDDPAAVLSRCTTVFVATTTNPYAEIAQRLSPHLRAGQRVVLFSSKFGGSQDFSYSL---GRKDMRVIETAA 387
            I ++G+G    A+A YL+S+G  +HL  R+LE ++ +   ++I   GVL G FP+  ++ DPAA+  R   V VAT T  Y E+A RL+PHLRAGQ VVLFSSK  GS +F+++L   G   + V+ET A
Sbjct:    7 IGVVGAGGEGRAVAAYLASRGLAVHLCTRDLEAVREIARRREIVTSGVLTGRFPLREVTADPAALGGRAV-VLVATVTTAYPEVAVRLAPHLRAGQVVVLFSSKLCGSVEFAHALAAAGAPGVDVVETDA 135          
BLAST of mRNA_P-wetherbeei_contig57417.1.1 vs. uniprot
Match: A0A521TZ40_9DELT (NAD/NADP octopine/nopaline dehydrogenase n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A521TZ40_9DELT)

HSP 1 Score: 107 bits (266), Expect = 3.770e-25
Identity = 55/130 (42.31%), Postives = 83/130 (63.85%), Query Frame = 1
Query:    7 IAIIGSGNSAHALACYLSSQGHRIHLWARNLEKLKHVIGPKKIFARGVLEGIFPVETISDDPAAVLSRCTTVFVATTTNPYAEIAQRLSPHLRAGQRVVLFSSKFGGSQDFSYSL---GRKDMRVIETAA 387
            + ++G+GNSA ALACYL+S+GH +HL  R++E+   + G + + A G +EG F +  ++D+ A   +   T+FVAT T  Y EIA RL+P+L    R+VLFSSK  GS +  + L   G + + V+ET A
Sbjct:    9 VGVVGTGNSARALACYLASRGHEVHLLVRHIERFPWLTGSRSLTATGKIEGTFALGGVTDNAARFAAAVGTIFVATVTTAYREIAARLAPYLDRDHRLVLFSSKLCGSVEVEHLLREHGVRSVPVLETDA 138          
BLAST of mRNA_P-wetherbeei_contig57417.1.1 vs. uniprot
Match: UPI001CC1B226 (NAD/NADP octopine/nopaline dehydrogenase family protein n=1 Tax=Streptomyces purpurogeneiscleroticus TaxID=68259 RepID=UPI001CC1B226)

HSP 1 Score: 103 bits (256), Expect = 1.070e-23
Identity = 54/132 (40.91%), Postives = 80/132 (60.61%), Query Frame = 1
Query:    1 EEIAIIGSGNSAHALACYLSSQGHRIHLWARNLEKLKHVIGPKKIFARGVLEGIFPVETISDDPAAVLSRCTTVFVATTTNPYAEIAQRLSPHLRAGQRVVLFSSKFGGSQDFSYSLGRKDMR---VIETAA 387
            E + ++G+G    ALA +L++ G  +HL  R+  K+  +   + I ARGVLEG  P+ T+ +DP  +  RC T+FVAT T  Y E+A RL+P+L +G  VVLFS K  GS +F++ L R       ++ET A
Sbjct:    8 EGVGVLGAGGEGLALAAHLAAHGESVHLCTRDPAKIAGIHQRRSIRARGVLEGRLPLATVGNDPGELARRCPTLFVATVTTAYPEVAARLAPYLNSGHTVVLFSGKLCGSIEFAHVLARNGHTGADILETDA 139          
BLAST of mRNA_P-wetherbeei_contig57417.1.1 vs. uniprot
Match: A0A1L9BKD0_9DELT (F420_oxidored domain-containing protein n=1 Tax=Cystobacter ferrugineus TaxID=83449 RepID=A0A1L9BKD0_9DELT)

HSP 1 Score: 100 bits (249), Expect = 1.130e-23
Identity = 51/110 (46.36%), Postives = 73/110 (66.36%), Query Frame = 1
Query:    1 EEIAIIGSGNSAHALACYLSSQGHRIHLWARNLEKLKHVIGPKKIFARGVLEGIFPVETISDDPAAVLSRCTTVFVATTTNPYAEIAQRLSPHLRAGQRVVLFSSKFGGS 330
            + I IIGSGN+A ALA YLS QGH + ++ R+ EKL+ +     I A G+LEG+FP+E ++ +P  +  +C T+FVA  T  Y ++A  L+P+LR    +VLFSSK  GS
Sbjct:    4 DRIGIIGSGNTARALAAYLSHQGHSVCVYTRHPEKLETIRRRGHIEATGLLEGMFPIEEVTSEPERLARQCGTLFVANVTTAYLDVAAALAPYLREHHALVLFSSKLCGS 113          
BLAST of mRNA_P-wetherbeei_contig57417.1.1 vs. uniprot
Match: A0A355TPU8_9BACT (NAD/NADP octopine/nopaline dehydrogenase n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TPU8_9BACT)

HSP 1 Score: 103 bits (256), Expect = 1.150e-23
Identity = 57/134 (42.54%), Postives = 81/134 (60.45%), Query Frame = 1
Query:    7 IAIIGSGNSAHALACYLSSQGHRIHLWARNLEKL-KHVIGPKKIFARGVLEGIFPVETISDDPAAVLSRCTTVFVATTTNPYAEIAQRLSPHLRAGQRVVLFSSKFGGSQDFSYSLGRKD------MRVIETAA 387
            IA++G GN AH+L+CYLS  G  +H+W RNL  L  +V+    I A G +EG F + ++S D    +  C  +FVAT T  Y +IA RL+P+L  GQ VV+FSSK  GS +F ++L   +      + V+ET A
Sbjct:   11 IAVLGGGNCAHSLSCYLSKLGCSVHMWVRNLGHLCPYVVKEHNIRAYGKMEGNFCLYSVSSDLEKSVRNCQMIFVATITTAYRDIAARLAPYLEPGQIVVVFSSKLAGSVEFEHTLWEHNPNLKGKVTVVETDA 144          
BLAST of mRNA_P-wetherbeei_contig57417.1.1 vs. uniprot
Match: A0A1V9ADB4_9PSEU (NAD/NADP octopine/nopaline dehydrogenase n=3 Tax=Saccharomonospora piscinae TaxID=687388 RepID=A0A1V9ADB4_9PSEU)

HSP 1 Score: 101 bits (251), Expect = 5.060e-23
Identity = 56/128 (43.75%), Postives = 77/128 (60.16%), Query Frame = 1
Query:   13 IIGSGNSAHALACYLSSQGHRIHLWARNLEKLKHVIGPKKIFARGVLEGIFPVETISDDPAAVLSRCTTVFVATTTNPYAEIAQRLSPHLRAGQRVVLFSSKFGGSQDFSYSL---GRKDMRVIETAA 387
            +IG+G    ALA YLSS  HR+HL+ R+  ++  V    +I ARG +EG FPV +++DD   V+ RC+ VFVAT T  Y  +A+ L+ HL     VVLFS K  G  +F+ +L   G +D  VIE  A
Sbjct:    3 VIGAGAEGLALAAYLSSASHRVHLYTRDPRRIAGVTRDGRIRARGTIEGEFPVGSVTDDIGTVVRRCSVVFVATVTTAYLGVARELARHLSGRHTVVLFSGKLCGCAEFTTALAGAGSEDADVIEMDA 130          
BLAST of mRNA_P-wetherbeei_contig57417.1.1 vs. uniprot
Match: A0A836Q8E9_9BACT (NAD/NADP octopine/nopaline dehydrogenase n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A836Q8E9_9BACT)

HSP 1 Score: 91.7 bits (226), Expect = 3.370e-19
Identity = 45/127 (35.43%), Postives = 74/127 (58.27%), Query Frame = 1
Query:   13 IIGSGNSAHALACYLSSQGHRIHLWARNLEKLKHVIGPKKIFARGVLEGIFPVETISDDPAAVLSRCTTVFVATTTNPYAEIAQRLSPHLRAGQRVVLFSSKFGGSQDFSYSLGRKDM----RVIET 381
            IIG+GNSAHALA YLS+ G  + ++ R+  K  H+   + I++   + G F +     D  A   +C  +FVAT    Y ++A+ L+P+L +   ++LFS KFGG+++F   L  K +    +++ET
Sbjct:   71 IIGTGNSAHALASYLSAAGCSVRMFTRSPIKADHINAVRHIYSEDRILGRFELAGAYTDAGAFADKCRNIFVATVATAYRDVAETLAPYLNSSHTIILFSGKFGGAREFQMKLQEKGLTDLPKIVET 197          
BLAST of mRNA_P-wetherbeei_contig57417.1.1 vs. uniprot
Match: A0A2W4IFK8_9BACT (NAD/NADP octopine/nopaline dehydrogenase n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A2W4IFK8_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 8.830e-19
Identity = 45/127 (35.43%), Postives = 76/127 (59.84%), Query Frame = 1
Query:   13 IIGSGNSAHALACYLSSQGHRIHLWARNLEKLKHVIGPKKIFARGVLEGIFPVETISDDPAAVLSRCTTVFVATTTNPYAEIAQRLSPHLRAGQRVVLFSSKFGGSQDFSYSL---GRKDM-RVIET 381
            I+G+GNSAHALA YLS+ G  + +++R+  K  H+   + +++   + G F ++     P      C T+FVAT    Y E+A+ L+P+L +   ++LFS KFGG+++F   L   G  D+ +++ET
Sbjct:   71 IVGTGNSAHALASYLSAAGCDVRMYSRSPIKADHINSIRHVYSEDRILGRFELKGAYSAPRDFAKHCKTIFVATVATAYREVAETLAPYLNSSHTIILFSGKFGGAREFQLQLLAKGLSDLPKIVET 197          
BLAST of mRNA_P-wetherbeei_contig57417.1.1 vs. uniprot
Match: UPI00082C7EC5 (NAD(P)-binding domain-containing protein n=1 Tax=Nocardia miyunensis TaxID=282684 RepID=UPI00082C7EC5)

HSP 1 Score: 84.0 bits (206), Expect = 3.460e-18
Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = 1
Query:    1 EEIAIIGSGNSAHALACYLSSQGHRIHLWARNLEKLKHVIGPKKIFARGVLEGIFPVETISDDPAAVLSRCTTVFVATTTNPYAEIAQRLSPHLRAGQRVVLFSSKFGGS 330
            E+IA++G G SA ALA +LS++G+ + L  R+  K   +   + + A G LEG++P++ I++D  A  + CTT+F+ T T  Y E+  RL PHL     +VLFS K  GS
Sbjct:   15 EQIAVVGGG-SARALAAWLSAEGYGVRLLVRDAAKTGPIRRTRTVRAIGRLEGVYPLQAITEDWRAA-TECTTIFLTTPTGAYPEVVARLGPHLSEQHTLVLFSGKLAGS 122          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57417.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
S9P8J0_9DELT9.500e-2643.94NAD/NADP octopine/nopaline dehydrogenase n=2 Tax=C... [more]
A0A1H5QJT0_9PSEU2.930e-2545.38Opine dehydrogenase n=8 Tax=Amycolatopsis TaxID=18... [more]
A0A521TZ40_9DELT3.770e-2542.31NAD/NADP octopine/nopaline dehydrogenase n=1 Tax=M... [more]
UPI001CC1B2261.070e-2340.91NAD/NADP octopine/nopaline dehydrogenase family pr... [more]
A0A1L9BKD0_9DELT1.130e-2346.36F420_oxidored domain-containing protein n=1 Tax=Cy... [more]
A0A355TPU8_9BACT1.150e-2342.54NAD/NADP octopine/nopaline dehydrogenase n=1 Tax=b... [more]
A0A1V9ADB4_9PSEU5.060e-2343.75NAD/NADP octopine/nopaline dehydrogenase n=3 Tax=S... [more]
A0A836Q8E9_9BACT3.370e-1935.43NAD/NADP octopine/nopaline dehydrogenase n=1 Tax=C... [more]
A0A2W4IFK8_9BACT8.830e-1935.43NAD/NADP octopine/nopaline dehydrogenase n=1 Tax=C... [more]
UPI00082C7EC53.460e-1840.91NAD(P)-binding domain-containing protein n=1 Tax=N... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57417contigP-wetherbeei_contig57417:6..392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1242864.D187_001409
PFAMsF420_oxidored,Octopine_DH
Model size387
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K04940
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.56e-26
EggNOG OGsCOG0240@1|root,COG0240@2|Bacteria,1MXI9@1224|Proteobacteria,42TEU@68525|delta/epsilon subdivisions,2WPTF@28221|Deltaproteobacteria
EC1.5.1.28
DescriptionPFAM NAD NADP octopine nopaline dehydrogenase
Cds size387
COG categoryC
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186851.7379835-CDS-P-wetherbeei_contig57417:5..3921683186851.7379835-CDS-P-wetherbeei_contig57417:5..392Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57417 6..392 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57417.1.1prot_P-wetherbeei_contig57417.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57417 6..392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57417.1.1

>prot_P-wetherbeei_contig57417.1.1 ID=prot_P-wetherbeei_contig57417.1.1|Name=mRNA_P-wetherbeei_contig57417.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
EEIAIIGSGNSAHALACYLSSQGHRIHLWARNLEKLKHVIGPKKIFARGV
LEGIFPVETISDDPAAVLSRCTTVFVATTTNPYAEIAQRLSPHLRAGQRV
VLFSSKFGGSQDFSYSLGRKDMRVIETAA
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mRNA from alignment at P-wetherbeei_contig57417:6..392-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57417.1.1 ID=mRNA_P-wetherbeei_contig57417.1.1|Name=mRNA_P-wetherbeei_contig57417.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig57417:6..392- (Phaeothamnion wetherbeei SAG_119_79)
GAAGAGATCGCCATCATCGGCTCGGGCAACTCCGCGCACGCTCTGGCCTG CTATCTCTCCTCGCAGGGCCACCGCATCCATCTCTGGGCCCGCAATCTCG AGAAACTCAAGCACGTCATCGGCCCCAAAAAGATTTTCGCGCGGGGCGTC CTGGAGGGCATCTTCCCGGTGGAAACCATCAGCGACGATCCGGCCGCCGT TCTCTCGCGCTGCACTACCGTCTTTGTCGCCACTACCACCAACCCTTACG CTGAGATCGCGCAGCGGCTCTCCCCGCATCTGCGCGCCGGGCAGCGCGTG GTGCTCTTCTCCAGCAAATTCGGCGGCAGCCAGGACTTCTCGTATAGTCT CGGGCGCAAGGACATGAGGGTCATCGAAACCGCCGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57417:6..392-

>mRNA_P-wetherbeei_contig57417.1.1 ID=mRNA_P-wetherbeei_contig57417.1.1|Name=mRNA_P-wetherbeei_contig57417.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig57417:6..392- (Phaeothamnion wetherbeei SAG_119_79)
GAAGAGATCGCCATCATCGGCTCGGGCAACTCCGCGCACGCTCTGGCCTG
CTATCTCTCCTCGCAGGGCCACCGCATCCATCTCTGGGCCCGCAATCTCG
AGAAACTCAAGCACGTCATCGGCCCCAAAAAGATTTTCGCGCGGGGCGTC
CTGGAGGGCATCTTCCCGGTGGAAACCATCAGCGACGATCCGGCCGCCGT
TCTCTCGCGCTGCACTACCGTCTTTGTCGCCACTACCACCAACCCTTACG
CTGAGATCGCGCAGCGGCTCTCCCCGCATCTGCGCGCCGGGCAGCGCGTG
GTGCTCTTCTCCAGCAAATTCGGCGGCAGCCAGGACTTCTCGTATAGTCT
CGGGCGCAAGGACATGAGGGTCATCGAAACCGCCGCT
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