mRNA_P-wetherbeei_contig5741.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5741.4.1
Unique NamemRNA_P-wetherbeei_contig5741.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5741.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5741contigP-wetherbeei_contig5741:2394..3336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size699
Hectar predicted targeting categorysignal peptide
Exons2
Cds size480
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186851.6442635-UTR-P-wetherbeei_contig5741:2393..26121683186851.6442635-UTR-P-wetherbeei_contig5741:2393..2612Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5741 2394..2612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186851.6545742-CDS-P-wetherbeei_contig5741:2612..28641683186851.6545742-CDS-P-wetherbeei_contig5741:2612..2864Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5741 2613..2864 +
1683186851.67267-CDS-P-wetherbeei_contig5741:3108..33361683186851.67267-CDS-P-wetherbeei_contig5741:3108..3336Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5741 3109..3336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5741.4.1prot_P-wetherbeei_contig5741.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5741 2613..3336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5741.4.1

>prot_P-wetherbeei_contig5741.4.1 ID=prot_P-wetherbeei_contig5741.4.1|Name=mRNA_P-wetherbeei_contig5741.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
MEFLLSLPPSFLSLDLLFLPPFGIAETVFFLRGLSTTKTVNTLWKFGMVG
DVVTPDPPTAVVVTSILDPTTNSYKAINCVSGCTFTAGSTIQFDGSASTA
AVGATIVSYKLNWGDGTGSPKGTVTTFTKTYSTPGVYRPGLVVVDSNGRN
DTAAVNFNVR
back to top

mRNA from alignment at P-wetherbeei_contig5741:2394..3336+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5741.4.1 ID=mRNA_P-wetherbeei_contig5741.4.1|Name=mRNA_P-wetherbeei_contig5741.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=943bp|location=Sequence derived from alignment at P-wetherbeei_contig5741:2394..3336+ (Phaeothamnion wetherbeei SAG_119_79)
GTCTTCGCAACCGGCCACGACGGTGGTTTGTTCCTGACGCGCGGCAGGAA
CGGCTACCTGTTTGCCGGCAAGAGCGACATCACCGAGAGTGAGTTAGGCA
AGGAAATTTATCGGAATTTGGGAGGTGTTGCACGTGCTCTTTTGCATCCG
ATCAGAATTGTAGTTGGAGCGACTGCTTGATCTCTTCCACCATTTCGTGC
TGCCTCTGACTAACCACCAATGGAGTTTCTTCTGTCTCTTCCACCTTCTT
TTCTCTCTCTCGACCTCTTATTCCTCCCGCCTTTCGGTATTGCGGAAACC
GTTTTTTTTCTGCGTGGTTTGTCAACAACAAAAACAGTCAACACGCTGTG
GAAGTTCGGCATGGTCGGCGACGTCGTGACGCCGGATCCGCCGACGGCGG
TCGTGGTGACCTCCATCTTGGATCCGACCACAAACAGTTACAAGGCCATC
AATTGCGTCAGTGGATGCACGGTGCGTTTGCACACTTTGCGCGGCATTAA
TGTCTAAGCGTTCTTGCAGTGCGCGCGCTGTTTTGTCCCGTTCCCTTTTA
TGTTCGCGAAACGAGTCGTTCCTCTTGCAGTCGCGTTACTTCCATTTCTC
GCTGCTGTCGCGACCACCCTGCCGTAGTTTGGTGATTATTATGGACCCGC
TTCTATCTTTGCCGCCTGCACATTATTCCTGTCGTTGCATCGCCCATCTC
TCTCCCCGCGCGCAGTTTACGGCCGGCAGCACCATCCAATTCGACGGCAG
CGCCTCGACGGCGGCGGTGGGCGCCACCATCGTCTCCTACAAGCTCAACT
GGGGCGACGGCACCGGGTCGCCGAAAGGAACGGTCACGACCTTCACAAAG
ACGTACTCAACGCCCGGAGTGTACCGGCCGGGCTTGGTGGTAGTGGATTC
CAACGGGCGCAACGACACCGCCGCCGTCAACTTCAACGTGCGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5741:2394..3336+

>mRNA_P-wetherbeei_contig5741.4.1 ID=mRNA_P-wetherbeei_contig5741.4.1|Name=mRNA_P-wetherbeei_contig5741.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig5741:2394..3336+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGTTTCTTCTGTCTCTTCCACCTTCTTTTCTCTCTCTCGACCTCTT
ATTCCTCCCGCCTTTCGGTATTGCGGAAACCGTTTTTTTTCTGCGTGGTT
TGTCAACAACAAAAACAGTCAACACGCTGTGGAAGTTCGGCATGGTCGGC
GACGTCGTGACGCCGGATCCGCCGACGGCGGTCGTGGTGACCTCCATCTT
GGATCCGACCACAAACAGTTACAAGGCCATCAATTGCGTCAGTGGATGCA
CGTTTACGGCCGGCAGCACCATCCAATTCGACGGCAGCGCCTCGACGGCG
GCGGTGGGCGCCACCATCGTCTCCTACAAGCTCAACTGGGGCGACGGCAC
CGGGTCGCCGAAAGGAACGGTCACGACCTTCACAAAGACGTACTCAACGC
CCGGAGTGTACCGGCCGGGCTTGGTGGTAGTGGATTCCAACGGGCGCAAC
GACACCGCCGCCGTCAACTTCAACGTGCGC
back to top