mRNA_P-wetherbeei_contig57402.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57402.1.1
Unique NamemRNA_P-wetherbeei_contig57402.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57402.1.1 vs. uniprot
Match: UPI001C3D446D (hypothetical protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3D446D)

HSP 1 Score: 208 bits (530), Expect = 1.670e-66
Identity = 99/133 (74.44%), Postives = 113/133 (84.96%), Query Frame = 1
Query:   28 LWRHVAGALACALLGVVSFGGDRRVPILEWIDLAIHESGHVFTYAFPDLVTAMTGSIAQVAVPLAIAGYFLWRRELVSGMVCLAWAGTSARDASVYIADAPYERLELIGGMHDWAFALGPGGVDALDRAGAIA 426
            LWR VA A ACALLG++S+G   RVP+L WIDLAIHE+GHV TY  PDL TAM GS+AQVA+PLAIA  F  RRE +S ++CLAWAGTSARD SVY+ADAPYERLELIGGMHDWAFALGP G+DA+DRAGA+A
Sbjct:   10 LWRGVAAAAACALLGLLSYGRGGRVPLLGWIDLAIHEAGHVATYVLPDLATAMAGSVAQVALPLAIAVRFAVRREALSALLCLAWAGTSARDVSVYVADAPYERLELIGGMHDWAFALGPEGLDAIDRAGAVA 142          
BLAST of mRNA_P-wetherbeei_contig57402.1.1 vs. uniprot
Match: A0A3D3QBQ5_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A3D3QBQ5_9ACTN)

HSP 1 Score: 159 bits (401), Expect = 1.290e-46
Identity = 77/142 (54.23%), Postives = 98/142 (69.01%), Query Frame = 1
Query:    1 MEPPSSSLALWRHVAGALACALLGVVSFGGDRRVPILEWIDLAIHESGHVFTYAFPDLVTAMTGSIAQVAVPLAIAGYFLWRRELVSGMVCLAWAGTSARDASVYIADAPYERLELIGGMHDWAFALGPGGVDALDRAGAIA 426
            MEP S    L R+VAG + CA+LG  +F     VP+L  +DL  HE GH+ TY  P ++TA  GSI QV VPL +A YFL RR+ + G  CLAWA TSA++ASV++ADAP++RL LIGG HDWAF LGP  ++ LD+A  IA
Sbjct:    1 MEPFSGWRTLRRYVAGLVLCAVLGWFAFAKAEPVPLLSLVDLGFHELGHLLTYVLPPVITAAIGSITQVLVPLGLATYFLLRRDRLGGGACLAWAATSAQNASVHVADAPFQRLHLIGGQHDWAFVLGPRHLNMLDKAHVIA 142          
BLAST of mRNA_P-wetherbeei_contig57402.1.1 vs. uniprot
Match: A0A538CA62_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538CA62_9ACTN)

HSP 1 Score: 147 bits (371), Expect = 3.080e-42
Identity = 69/133 (51.88%), Postives = 92/133 (69.17%), Query Frame = 1
Query:   31 WRHVAGALACALLGVVSFGGDRRVPILEWIDLAIHESGHVFTYAFPDLVTAMTGSIAQVAVPLAIAGYFLW-RRELVSGMVCLAWAGTSARDASVYIADAPYERLELIGGMHDWAFALGPGGVDALDRAGAIA 426
            W++  G   C L   ++F    +VP+L  +DL  HE GH+ T  FP++V    GS AQ+AVP+ +A YFL+ +++ + G +CLAWA TSA D +VYIADAPY+RL+LIGG HDWA  LGP   +ALDRAGAIA
Sbjct:    9 WKYAIGVAVCVLFAWIAFVRKAQVPLLSLVDLGFHELGHLVTRPFPEVVMLAAGSGAQIAVPVGLAAYFLFLQKDRLGGTLCLAWAATSANDVAVYIADAPYQRLQLIGGEHDWATILGPEHFNALDRAGAIA 141          
BLAST of mRNA_P-wetherbeei_contig57402.1.1 vs. uniprot
Match: A0A7V9PFY6_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9PFY6_9ACTN)

HSP 1 Score: 141 bits (356), Expect = 5.410e-40
Identity = 73/134 (54.48%), Postives = 88/134 (65.67%), Query Frame = 1
Query:   34 RHVAGALACALLGVVSFGGDRRVPILEWIDLAIHESGHVFTYAFP--DLVTAMTGSIAQVAVPLAIAGYFLW-RRELVSGMVCLAWAGTSARDASVYIADAPYERLELIGGMHDWAFALGPGGVDALDRAGAIA 426
            R +A   AC  LGV++     RVP+L  +DL  HE GH+ +Y  P  D+V A  GS+ QV VPLA+A YFL  RRE  S  VCLAWA TS R  + Y+ADAP+ERL LIGG HDWAF LGP G D L RA ++A
Sbjct:    6 RDLACLGACVALGVIALVQGDRVPLLSLVDLGFHELGHLVSYGLPVSDVVKAAAGSVGQVGVPLALAAYFLAARREQASAGVCLAWAATSLRSVATYVADAPFERLPLIGGEHDWAFILGPEGTDDLGRAASLA 139          
BLAST of mRNA_P-wetherbeei_contig57402.1.1 vs. uniprot
Match: A0A1F2WA85_9ACTN (Uncharacterized protein n=1 Tax=Actinobacteria bacterium RBG_16_70_17 TaxID=1797205 RepID=A0A1F2WA85_9ACTN)

HSP 1 Score: 141 bits (355), Expect = 1.360e-39
Identity = 72/133 (54.14%), Postives = 87/133 (65.41%), Query Frame = 1
Query:   34 RHVAGALACALLGVVSFGGDRRVPILEWIDLAIHESGHVFTYAFPDLVTAMTGSIAQVAVPLAIAGYFLWRR-ELVSGMVCLAWAGTSARDASVYIADAPYERLELIGG-MHDWAFALGPGGVDALDRAGAIA 426
            R+V  A   A +G V+FG    VPIL+  DL +HE GH+ T + PD V  + GS AQVAVPL +  YFLW+R E  S   C AWA TS RD SVYIADAP + L L+GG  HDWA+ LGP G D + +AGAIA
Sbjct:    9 RYVLAAAVSAAIGWVAFGAGWSVPILDQFDLGVHEVGHLLTRSLPDRVMFLAGSAAQVAVPLGLGAYFLWKRKEWASAGFCTAWAATSVRDVSVYIADAPRQALPLVGGGTHDWAWLLGPHGFDCIGQAGAIA 141          
BLAST of mRNA_P-wetherbeei_contig57402.1.1 vs. uniprot
Match: A0A7Y1SRZ5_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y1SRZ5_9ACTN)

HSP 1 Score: 136 bits (343), Expect = 8.090e-38
Identity = 68/123 (55.28%), Postives = 86/123 (69.92%), Query Frame = 1
Query:   28 LWRHVAGALACALLGVVSFGGDRRVPILEWIDLAIHESGHVFTYAFP--DLVTAMTGSIAQVAVPLAIAGYFLW-RRELVSGMVCLAWAGTSARDASVYIADAPYERLELIGGMHDWAFALGP 387
            LWR  + A    ++    +  + RVP+L ++DL  HE GH+  Y  P  + +TA  GSI Q+AVPL +A YFLW R++ V+G + LAWAGTSA DASVYIADAPYERL+LIGG HDWAF LGP
Sbjct:    7 LWRPFSAAAVIVVMAFFVYVRNVRVPLLGYVDLGFHELGHLIGYIVPISERLTAALGSITQIAVPLGLAVYFLWWRKDQVAGGLMLAWAGTSAWDASVYIADAPYERLQLIGGDHDWAFLLGP 129          
BLAST of mRNA_P-wetherbeei_contig57402.1.1 vs. uniprot
Match: A0A6L5FX84_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A6L5FX84_9ACTN)

HSP 1 Score: 133 bits (334), Expect = 6.450e-37
Identity = 70/143 (48.95%), Postives = 87/143 (60.84%), Query Frame = 1
Query:    1 MEPPSSSLALWRHVAGALACALLGVVSFGGDRRVPILEWIDLAIHESGHVFTYAFPDLVTAMTGSIAQVAVPLAIAGYFLW-RRELVSGMVCLAWAGTSARDASVYIADAPYERLELIGGMHDWAFALGPGGVDALDRAGAIA 426
            ME  +     WR   G   C L G  +F     VP+L  +DL  HE GH+ TY FPDLVTA  GSI Q+AVP  +A YF   R++ +    CLAWA TSA++ SVY+ADAP++ L LIGG HDWAF LG   +  +D A AIA
Sbjct:    1 MEATAERPIPWRPFLGLTICTLFGWFAFVRGVNVPLLSLVDLGFHELGHLVTYPFPDLVTASMGSITQIAVPFGLAVYFATVRKDSLGFSFCLAWAATSAQNVSVYVADAPFQALPLIGGEHDWAFILGR--LSHVDDAAAIA 141          
BLAST of mRNA_P-wetherbeei_contig57402.1.1 vs. uniprot
Match: UPI00130086EE (hypothetical protein n=1 Tax=Euzebya rosea TaxID=2052804 RepID=UPI00130086EE)

HSP 1 Score: 122 bits (306), Expect = 3.400e-32
Identity = 63/126 (50.00%), Postives = 75/126 (59.52%), Query Frame = 1
Query:   31 WRHVAGALACALLGVVSFGGDRRVPILEWIDLAIHESGHVFTYAFPDLVTAMTGSIAQVAVPLAIAGYFLWR-RELVSGMVCLAWAGTSARDASVYIADAPYERLELIGGMHDWAFALGPGGVDAL 405
            W H  G     LLG  +F    RVP+L WIDLA+HE GHV     P       GS  QV VPL +A    WR R+ +   + L WA TSA+DASVYIADAP +RL LIGG+HDW   LGP  +DA+
Sbjct:   21 WHHAIGLPVVLLLGWYAFVRGTRVPVLGWIDLAVHEFGHVAFAWLPRAGMLTMGSGTQVLVPLVVAAGLWWRSRDRLGAALALGWASTSAQDASVYIADAPVQRLPLIGGVHDWGTLLGPRHLDAM 146          
BLAST of mRNA_P-wetherbeei_contig57402.1.1 vs. uniprot
Match: A0A346XV17_9ACTN (Uncharacterized protein n=1 Tax=Euzebya pacifica TaxID=1608957 RepID=A0A346XV17_9ACTN)

HSP 1 Score: 122 bits (305), Expect = 5.470e-32
Identity = 62/126 (49.21%), Postives = 75/126 (59.52%), Query Frame = 1
Query:   31 WRHVAGALACALLGVVSFGGDRRVPILEWIDLAIHESGHVFTYAFPDLVTAMTGSIAQVAVPLAIAGYFLWR-RELVSGMVCLAWAGTSARDASVYIADAPYERLELIGGMHDWAFALGPGGVDAL 405
            W H  G     LLG  +F    RVP+L WIDLA+HE GHV     P       GS  QV VPL +A    WR R+ +   + L WA TS +DASVYIADAP++RL LIGG+HDW   LGP  +DA+
Sbjct:   27 WHHAIGLPVVVLLGWYAFVRGTRVPVLGWIDLAVHEFGHVAFAWLPRAGMLTMGSGTQVMVPLLVAAGLWWRSRDRLGAALALGWAATSTQDASVYIADAPHQRLPLIGGVHDWGTLLGPRHLDAM 152          
BLAST of mRNA_P-wetherbeei_contig57402.1.1 vs. uniprot
Match: A0A7C1UFT7_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1UFT7_9ACTN)

HSP 1 Score: 114 bits (286), Expect = 9.830e-30
Identity = 63/132 (47.73%), Postives = 81/132 (61.36%), Query Frame = 1
Query:   40 VAGALACALLGVVSFGGDRRVPILEWIDLAIHESGHVFTYAFP--DLVTAMTGSIAQVAVPLAIAGYFLW-RRELVSGMVCLAWAGTSARDASVYIADAPYERLELIGGMHDWAFALGPGGVDALDRAGAIA 426
            +AGALA   LG   F    RVP+L   DL IHE GH+ +Y  P   +V A  GS AQ+ VP  +  YFL  R + ++   C  WA TS  D S+Y+ADAPY+RL LIGG HDWA+ LGP G++ L+ A  +A
Sbjct:    1 MAGALAA--LGWFGFVRGVRVPLLGLFDLGIHELGHLISYPLPVPRVVEAAAGSGAQILVPSGLVVYFLGVRGDHLAAAFCAGWAATSMVDVSIYVADAPYQRLSLIGGYHDWAYILGPSGLNHLEWAAGLA 130          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57402.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3D446D1.670e-6674.44hypothetical protein n=1 Tax=Miltoncostaea oceani ... [more]
A0A3D3QBQ5_9ACTN1.290e-4654.23Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A538CA62_9ACTN3.080e-4251.88Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A7V9PFY6_9ACTN5.410e-4054.48Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A1F2WA85_9ACTN1.360e-3954.14Uncharacterized protein n=1 Tax=Actinobacteria bac... [more]
A0A7Y1SRZ5_9ACTN8.090e-3855.28Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A6L5FX84_9ACTN6.450e-3748.95Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
UPI00130086EE3.400e-3250.00hypothetical protein n=1 Tax=Euzebya rosea TaxID=2... [more]
A0A346XV17_9ACTN5.470e-3249.21Uncharacterized protein n=1 Tax=Euzebya pacifica T... [more]
A0A7C1UFT7_9ACTN9.830e-3047.73Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57402contigP-wetherbeei_contig57402:84..509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1121382.JQKG01000026_gene2923
Model size426
Max annot lvl2|Bacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue7.34e-14
EggNOG OGs2DC00@1|root,2ZC4V@2|Bacteria
Cds size426
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186851.5596166-CDS-P-wetherbeei_contig57402:83..5091683186851.5596166-CDS-P-wetherbeei_contig57402:83..509Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57402 84..509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57402.1.1prot_P-wetherbeei_contig57402.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57402 84..509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57402.1.1

>prot_P-wetherbeei_contig57402.1.1 ID=prot_P-wetherbeei_contig57402.1.1|Name=mRNA_P-wetherbeei_contig57402.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
MEPPSSSLALWRHVAGALACALLGVVSFGGDRRVPILEWIDLAIHESGHV
FTYAFPDLVTAMTGSIAQVAVPLAIAGYFLWRRELVSGMVCLAWAGTSAR
DASVYIADAPYERLELIGGMHDWAFALGPGGVDALDRAGAIA
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mRNA from alignment at P-wetherbeei_contig57402:84..509+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57402.1.1 ID=mRNA_P-wetherbeei_contig57402.1.1|Name=mRNA_P-wetherbeei_contig57402.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig57402:84..509+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCCGCCGTCGTCGTCTCTGGCGCTTTGGCGCCACGTGGCCGGAGC GTTGGCGTGCGCGCTGCTGGGCGTGGTGTCGTTCGGCGGCGATCGGCGCG TGCCGATCTTGGAATGGATCGATCTCGCGATCCACGAGTCGGGCCACGTG TTCACCTACGCCTTCCCCGATCTCGTGACGGCGATGACGGGCTCGATCGC CCAGGTGGCCGTGCCGCTCGCCATCGCCGGATACTTCCTCTGGCGTCGAG AGCTGGTGTCGGGGATGGTCTGCCTGGCCTGGGCGGGCACCTCCGCACGC GATGCGTCGGTTTACATCGCCGACGCGCCCTACGAGCGCCTGGAGCTGAT CGGCGGGATGCACGACTGGGCCTTCGCGCTCGGCCCGGGTGGCGTCGACG CACTGGATCGCGCGGGCGCCATCGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57402:84..509+

>mRNA_P-wetherbeei_contig57402.1.1 ID=mRNA_P-wetherbeei_contig57402.1.1|Name=mRNA_P-wetherbeei_contig57402.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig57402:84..509+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCCGCCGTCGTCGTCTCTGGCGCTTTGGCGCCACGTGGCCGGAGC
GTTGGCGTGCGCGCTGCTGGGCGTGGTGTCGTTCGGCGGCGATCGGCGCG
TGCCGATCTTGGAATGGATCGATCTCGCGATCCACGAGTCGGGCCACGTG
TTCACCTACGCCTTCCCCGATCTCGTGACGGCGATGACGGGCTCGATCGC
CCAGGTGGCCGTGCCGCTCGCCATCGCCGGATACTTCCTCTGGCGTCGAG
AGCTGGTGTCGGGGATGGTCTGCCTGGCCTGGGCGGGCACCTCCGCACGC
GATGCGTCGGTTTACATCGCCGACGCGCCCTACGAGCGCCTGGAGCTGAT
CGGCGGGATGCACGACTGGGCCTTCGCGCTCGGCCCGGGTGGCGTCGACG
CACTGGATCGCGCGGGCGCCATCGCA
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