mRNA_P-wetherbeei_contig57350.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57350.1.1
Unique NamemRNA_P-wetherbeei_contig57350.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57350.1.1 vs. uniprot
Match: A0A1I1KIT1_9BURK (Transporter, CPA2 family n=3 Tax=Polaromonas TaxID=52972 RepID=A0A1I1KIT1_9BURK)

HSP 1 Score: 282 bits (722), Expect = 3.660e-92
Identity = 143/156 (91.67%), Postives = 150/156 (96.15%), Query Frame = 1 
Query:    1 MNEILAIWAEWIKPSAGLPTVQWSILLALAAASGHLVNRYTGLPKVIGYSVIGAFAGLAGFTGAAWPLQGTGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAESTLTFFLVRWALDQMGVREIVAESLALLAMAASPAVLSRVAIDTRAA 468
            MN+ILAIWAEW+KPSAGLPTVQWSILLALAAA+GHLVNRY+GLPKVIGYS +GAFAGLAGFTGAAWPLQGTGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAESTLTF LV W +  MGVRE+VAESLALLAMAASPAVLSRVAIDTRAA
Sbjct:    1 MNDILAIWAEWVKPSAGLPTVQWSILLALAAAAGHLVNRYSGLPKVIGYSAVGAFAGLAGFTGAAWPLQGTGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAESTLTFLLVYWLMGLMGVREVVAESLALLAMAASPAVLSRVAIDTRAA 156
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BLAST of mRNA_P-wetherbeei_contig57350.1.1 vs. uniprot
Match: A0A7Y0G7B4_9BURK (Sodium:proton exchanger n=1 Tax=Polaromonas sp. TaxID=1869339 RepID=A0A7Y0G7B4_9BURK)

HSP 1 Score: 276 bits (706), Expect = 9.570e-90
Identity = 138/156 (88.46%), Postives = 147/156 (94.23%), Query Frame = 1 
Query:    1 MNEILAIWAEWIKPSAGLPTVQWSILLALAAASGHLVNRYTGLPKVIGYSVIGAFAGLAGFTGAAWPLQGTGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAESTLTFFLVRWALDQMGVREIVAESLALLAMAASPAVLSRVAIDTRAA 468
            MNEILAIWAEWIKPSAGLPTVQWSILLALAAA+GHL+NRYTGLPKV+GYS +G FAGLAGF+GA WPLQGTGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAESTLTFFLV+W L  MGVRE+VAES+AL+AMAASPAVL R AID RAA
Sbjct:    1 MNEILAIWAEWIKPSAGLPTVQWSILLALAAAAGHLINRYTGLPKVVGYSAVGTFAGLAGFSGAVWPLQGTGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAESTLTFFLVQWVLGLMGVREVVAESIALIAMAASPAVLPRGAIDPRAA 156
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BLAST of mRNA_P-wetherbeei_contig57350.1.1 vs. uniprot
Match: A1VTI1_POLNA (Transporter, CPA2 family n=6 Tax=Polaromonas TaxID=52972 RepID=A1VTI1_POLNA)

HSP 1 Score: 276 bits (705), Expect = 1.360e-89
Identity = 141/156 (90.38%), Postives = 147/156 (94.23%), Query Frame = 1 
Query:    1 MNEILAIWAEWIKPSAGLPTVQWSILLALAAASGHLVNRYTGLPKVIGYSVIGAFAGLAGFTGAAWPLQGTGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAESTLTFFLVRWALDQMGVREIVAESLALLAMAASPAVLSRVAIDTRAA 468
            MNEI+AIWAEWIKPSAGLPTVQWSILLALAAA+GHLVNRYTGLPKVIGYS +G FAGLAGFTGAAWPLQGTGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAESTLT+F V W L  MGV  +VAESLAL+AMAASPAVLSRVAIDTRAA
Sbjct:    1 MNEIMAIWAEWIKPSAGLPTVQWSILLALAAAAGHLVNRYTGLPKVIGYSAVGTFAGLAGFTGAAWPLQGTGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAESTLTYFGVYWLLGLMGVPAVVAESLALVAMAASPAVLSRVAIDTRAA 156
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BLAST of mRNA_P-wetherbeei_contig57350.1.1 vs. uniprot
Match: A0A1F4I6T5_9BURK (Sodium:proton exchanger (Fragment) n=1 Tax=Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_61_11 TaxID=1797557 RepID=A0A1F4I6T5_9BURK)

HSP 1 Score: 270 bits (690), Expect = 2.970e-89
Identity = 137/156 (87.82%), Postives = 144/156 (92.31%), Query Frame = 1 
Query:    1 MNEILAIWAEWIKPSAGLPTVQWSILLALAAASGHLVNRYTGLPKVIGYSVIGAFAGLAGFTGAAWPLQGTGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAESTLTFFLVRWALDQMGVREIVAESLALLAMAASPAVLSRVAIDTRAA 468
            MNEILA+W EWIKPSAGL TVQWS+LLALAAA+GHLVNRYTGLPKVIGYSVIGAFAGLAGFTGA WPLQG GLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSL ESTLTF LV W + Q GV ++VAESLAL+AMAASPAVLSRV IDTRAA
Sbjct:    1 MNEILALWDEWIKPSAGLATVQWSLLLALAAAAGHLVNRYTGLPKVIGYSVIGAFAGLAGFTGAVWPLQGPGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLVESTLTFILVYWVMGQFGVSDVVAESLALVAMAASPAVLSRVVIDTRAA 156
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BLAST of mRNA_P-wetherbeei_contig57350.1.1 vs. uniprot
Match: A0A7Y0GE50_9BURK (Sodium:proton exchanger n=1 Tax=Polaromonas sp. TaxID=1869339 RepID=A0A7Y0GE50_9BURK)

HSP 1 Score: 274 bits (701), Expect = 5.450e-89
Identity = 137/156 (87.82%), Postives = 149/156 (95.51%), Query Frame = 1 
Query:    1 MNEILAIWAEWIKPSAGLPTVQWSILLALAAASGHLVNRYTGLPKVIGYSVIGAFAGLAGFTGAAWPLQGTGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAESTLTFFLVRWALDQMGVREIVAESLALLAMAASPAVLSRVAIDTRAA 468
            MNEILAIWAEWIKPSAGLPTVQWSILLALAAA+GHL+NRYTGLPKV+GYS++GAFAGLAGF+GA WPLQG GLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAESTLTF LV W L ++G+R++VAESLALLAMAASPAVLSRV IDT+AA
Sbjct:    1 MNEILAIWAEWIKPSAGLPTVQWSILLALAAAAGHLLNRYTGLPKVVGYSMVGAFAGLAGFSGAVWPLQGIGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAESTLTFLLVYWVLSKLGMRDMVAESLALLAMAASPAVLSRVVIDTQAA 156
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BLAST of mRNA_P-wetherbeei_contig57350.1.1 vs. uniprot
Match: A0A258TKB7_9BURK (Sodium:proton exchanger n=2 Tax=unclassified Polaromonas TaxID=2638319 RepID=A0A258TKB7_9BURK)

HSP 1 Score: 274 bits (700), Expect = 7.720e-89
Identity = 140/156 (89.74%), Postives = 144/156 (92.31%), Query Frame = 1 
Query:    1 MNEILAIWAEWIKPSAGLPTVQWSILLALAAASGHLVNRYTGLPKVIGYSVIGAFAGLAGFTGAAWPLQGTGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAESTLTFFLVRWALDQMGVREIVAESLALLAMAASPAVLSRVAIDTRAA 468
            MN+IL IW+EWIKPSAGLPTVQWSILLALAAASGHLVNRYTGLPKVIGYSVIGAFAGLAGFTGA WPL+GTGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAES  TF  V W L QMGVR  VAE LALLAMAASPAVL+RVAIDTRAA
Sbjct:    1 MNDILTIWSEWIKPSAGLPTVQWSILLALAAASGHLVNRYTGLPKVIGYSVIGAFAGLAGFTGAVWPLKGTGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAESAFTFLAVHWVLGQMGVRATVAEPLALLAMAASPAVLARVAIDTRAA 156
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BLAST of mRNA_P-wetherbeei_contig57350.1.1 vs. uniprot
Match: A0A7Y0C7C0_9BURK (Sodium:proton exchanger n=1 Tax=Polaromonas sp. TaxID=1869339 RepID=A0A7Y0C7C0_9BURK)

HSP 1 Score: 273 bits (697), Expect = 2.190e-88
Identity = 136/156 (87.18%), Postives = 147/156 (94.23%), Query Frame = 1 
Query:    1 MNEILAIWAEWIKPSAGLPTVQWSILLALAAASGHLVNRYTGLPKVIGYSVIGAFAGLAGFTGAAWPLQGTGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAESTLTFFLVRWALDQMGVREIVAESLALLAMAASPAVLSRVAIDTRAA 468
            MNEILAIWAEWIKPSAGLPTVQWSILLA+AAA+GHL+NRYTGLPKVIGYS++GAFAGLAGFTGA WPLQG GLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQS+AES LT+FLV W L ++GV  +VAESLALLAMAASPAVLSRVA+DT AA
Sbjct:    1 MNEILAIWAEWIKPSAGLPTVQWSILLAIAAAAGHLINRYTGLPKVIGYSIVGAFAGLAGFTGAVWPLQGIGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSVAESALTYFLVHWVLIRLGVNIVVAESLALLAMAASPAVLSRVAMDTHAA 156
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BLAST of mRNA_P-wetherbeei_contig57350.1.1 vs. uniprot
Match: J2L5E1_9BURK (Kef-type K+ transport system, membrane component n=4 Tax=unclassified Polaromonas TaxID=2638319 RepID=J2L5E1_9BURK)

HSP 1 Score: 270 bits (691), Expect = 1.930e-87
Identity = 138/156 (88.46%), Postives = 145/156 (92.95%), Query Frame = 1 
Query:    1 MNEILAIWAEWIKPSAGLPTVQWSILLALAAASGHLVNRYTGLPKVIGYSVIGAFAGLAGFTGAAWPLQGTGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAESTLTFFLVRWALDQMGVREIVAESLALLAMAASPAVLSRVAIDTRAA 468
            MN+ILAIWAEWIKPSAGLPTVQWSILLA+AAA+GHL+NRYTGLPKV+GYS++GA AGLAGFTGA WPLQGTGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAES LTF LV WAL  M VR  VAE LALLAMAASPAVLSRVAIDTRAA
Sbjct:    1 MNDILAIWAEWIKPSAGLPTVQWSILLAVAAAAGHLLNRYTGLPKVVGYSLVGAVAGLAGFTGAVWPLQGTGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAESALTFILVYWALGAMSVRVAVAEPLALLAMAASPAVLSRVAIDTRAA 156
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BLAST of mRNA_P-wetherbeei_contig57350.1.1 vs. uniprot
Match: A0A1S8FMA8_9BURK (Sodium:proton exchanger n=6 Tax=Polaromonas TaxID=52972 RepID=A0A1S8FMA8_9BURK)

HSP 1 Score: 266 bits (680), Expect = 8.080e-86
Identity = 133/155 (85.81%), Postives = 143/155 (92.26%), Query Frame = 1 
Query:    1 MNEILAIWAEWIKPSAGLPTVQWSILLALAAASGHLVNRYTGLPKVIGYSVIGAFAGLAGFTGAAWPLQGTGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAESTLTFFLVRWALDQMGVREIVAESLALLAMAASPAVLSRVAIDTRA 465
            MNE++AIWAEWIKPSAGLPTVQWS+LLA+AA +GHLV RY G+PKV+GYS +GAFAG AGFTGAAWPLQGTGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAES LTFF V WAL  +GVREIVAE LALLAMAASPAVLSRV +DTRA
Sbjct:    1 MNEVMAIWAEWIKPSAGLPTVQWSMLLAVAALTGHLVLRYAGIPKVVGYSAVGAFAGFAGFTGAAWPLQGTGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAESALTFFFVYWALTFLGVREIVAEPLALLAMAASPAVLSRVIMDTRA 155
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BLAST of mRNA_P-wetherbeei_contig57350.1.1 vs. uniprot
Match: UPI0019B8B450 (Cation:proton antiporter n=1 Tax=Polaromonas sp. TaxID=1869339 RepID=UPI0019B8B450)

HSP 1 Score: 264 bits (675), Expect = 4.590e-85
Identity = 134/156 (85.90%), Postives = 143/156 (91.67%), Query Frame = 1 
Query:    1 MNEILAIWAEWIKPSAGLPTVQWSILLALAAASGHLVNRYTGLPKVIGYSVIGAFAGLAGFTGAAWPLQGTGLFLLELGVAVVLFEAGGRIPLRWFRHNPMVLVQSLAESTLTFFLVRWALDQMGVREIVAESLALLAMAASPAVLSRVAIDTRAA 468
            MNE++AIWAEWIKPSAGLPTVQWSILLA+AAA+GHLV+RYTGLPKV GYS +G FAGLAGF GAAWPLQGTGLFLLELGVAVVLFEAGGRI LRWFRHNPMVLVQSLAESTLTF L  W L  +G+ E+VAESLALLAMAASPAVLSRV IDTRAA
Sbjct:    1 MNELMAIWAEWIKPSAGLPTVQWSILLAIAAAAGHLVHRYTGLPKVTGYSAVGTFAGLAGFNGAAWPLQGTGLFLLELGVAVVLFEAGGRISLRWFRHNPMVLVQSLAESTLTFVLSYWLLGVLGMPEVVAESLALLAMAASPAVLSRVVIDTRAA 156
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57350.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1I1KIT1_9BURK3.660e-9291.67Transporter, CPA2 family n=3 Tax=Polaromonas TaxID... [more]
A0A7Y0G7B4_9BURK9.570e-9088.46Sodium:proton exchanger n=1 Tax=Polaromonas sp. Ta... [more]
A1VTI1_POLNA1.360e-8990.38Transporter, CPA2 family n=6 Tax=Polaromonas TaxID... [more]
A0A1F4I6T5_9BURK2.970e-8987.82Sodium:proton exchanger (Fragment) n=1 Tax=Burkhol... [more]
A0A7Y0GE50_9BURK5.450e-8987.82Sodium:proton exchanger n=1 Tax=Polaromonas sp. Ta... [more]
A0A258TKB7_9BURK7.720e-8989.74Sodium:proton exchanger n=2 Tax=unclassified Polar... [more]
A0A7Y0C7C0_9BURK2.190e-8887.18Sodium:proton exchanger n=1 Tax=Polaromonas sp. Ta... [more]
J2L5E1_9BURK1.930e-8788.46Kef-type K+ transport system, membrane component n... [more]
A0A1S8FMA8_9BURK8.080e-8685.81Sodium:proton exchanger n=6 Tax=Polaromonas TaxID=... [more]
UPI0019B8B4504.590e-8585.90Cation:proton antiporter n=1 Tax=Polaromonas sp. T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57350contigP-wetherbeei_contig57350:2..469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog365044.Pnap_3663
PFAMsNa_H_Exchanger
Model size468
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.22e-90
EggNOG OGsCOG0475@1|root,COG0475@2|Bacteria,1R9PF@1224|Proteobacteria,2VKV2@28216|Betaproteobacteria,4AA1N@80864|Comamonadaceae
DescriptionSodium hydrogen exchanger
Cds size468
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186850.850939-CDS-P-wetherbeei_contig57350:1..4691683186850.850939-CDS-P-wetherbeei_contig57350:1..469Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57350 2..469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57350.1.1prot_P-wetherbeei_contig57350.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57350 2..469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57350.1.1

>prot_P-wetherbeei_contig57350.1.1 ID=prot_P-wetherbeei_contig57350.1.1|Name=mRNA_P-wetherbeei_contig57350.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
MNEILAIWAEWIKPSAGLPTVQWSILLALAAASGHLVNRYTGLPKVIGYS
VIGAFAGLAGFTGAAWPLQGTGLFLLELGVAVVLFEAGGRIPLRWFRHNP
MVLVQSLAESTLTFFLVRWALDQMGVREIVAESLALLAMAASPAVLSRVA
IDTRAA
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mRNA from alignment at P-wetherbeei_contig57350:2..469-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57350.1.1 ID=mRNA_P-wetherbeei_contig57350.1.1|Name=mRNA_P-wetherbeei_contig57350.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig57350:2..469- (Phaeothamnion wetherbeei SAG_119_79)
ATGAATGAAATCCTGGCCATCTGGGCCGAGTGGATCAAGCCATCGGCAGG
CTTGCCTACCGTGCAGTGGTCCATCCTGCTGGCCCTGGCGGCCGCTTCCG
GCCATCTGGTGAATCGCTACACCGGCCTGCCCAAGGTGATTGGTTATTCG
GTCATCGGCGCCTTTGCCGGCCTGGCCGGTTTCACGGGCGCTGCCTGGCC
TTTGCAGGGCACCGGGCTGTTCCTGCTGGAGTTGGGCGTCGCGGTTGTGC
TGTTTGAGGCCGGTGGCCGCATTCCGCTGCGCTGGTTTCGCCACAACCCC
ATGGTGCTGGTGCAAAGCCTGGCCGAATCCACGCTGACCTTCTTTCTGGT
GCGCTGGGCGCTGGACCAGATGGGCGTGCGCGAAATCGTTGCCGAATCCC
TGGCCCTGCTGGCCATGGCCGCATCGCCCGCCGTGCTGTCGCGCGTAGCG
ATCGACACGCGGGCCGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57350:2..469-

>mRNA_P-wetherbeei_contig57350.1.1 ID=mRNA_P-wetherbeei_contig57350.1.1|Name=mRNA_P-wetherbeei_contig57350.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig57350:2..469- (Phaeothamnion wetherbeei SAG_119_79)
ATGAATGAAATCCTGGCCATCTGGGCCGAGTGGATCAAGCCATCGGCAGG
CTTGCCTACCGTGCAGTGGTCCATCCTGCTGGCCCTGGCGGCCGCTTCCG
GCCATCTGGTGAATCGCTACACCGGCCTGCCCAAGGTGATTGGTTATTCG
GTCATCGGCGCCTTTGCCGGCCTGGCCGGTTTCACGGGCGCTGCCTGGCC
TTTGCAGGGCACCGGGCTGTTCCTGCTGGAGTTGGGCGTCGCGGTTGTGC
TGTTTGAGGCCGGTGGCCGCATTCCGCTGCGCTGGTTTCGCCACAACCCC
ATGGTGCTGGTGCAAAGCCTGGCCGAATCCACGCTGACCTTCTTTCTGGT
GCGCTGGGCGCTGGACCAGATGGGCGTGCGCGAAATCGTTGCCGAATCCC
TGGCCCTGCTGGCCATGGCCGCATCGCCCGCCGTGCTGTCGCGCGTAGCG
ATCGACACGCGGGCCGCA
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