mRNA_P-wetherbeei_contig5735.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5735.2.1
Unique NamemRNA_P-wetherbeei_contig5735.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5735.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5735contigP-wetherbeei_contig5735:2045..3727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1437
Hectar predicted targeting categoryother localisation
Exons2
Cds size1434
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186850.7868073-CDS-P-wetherbeei_contig5735:2044..24691683186850.7868073-CDS-P-wetherbeei_contig5735:2044..2469Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5735 2045..2469 +
1683186850.8012273-CDS-P-wetherbeei_contig5735:2716..37251683186850.8012273-CDS-P-wetherbeei_contig5735:2716..3725Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5735 2717..3725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5735.2.1prot_P-wetherbeei_contig5735.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5735 2045..3725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5735.2.1

>prot_P-wetherbeei_contig5735.2.1 ID=prot_P-wetherbeei_contig5735.2.1|Name=mRNA_P-wetherbeei_contig5735.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=478bp
GRVASGPAAPRQPPPLPPRASARALQRGTETAGENADDSAAVEAARAETA
AACAAAKDARRRAAALEEKVDELKEALRRRDFAARTAAAAHDAAGISHSG
GVGDSERRRSMVKELAEQRTRLEDLLRGVATLTRGCDKLLRRYKGALMGP
SQRDGDGGGAGTDGVNDDDATWARSAIEPPAWAMDLAAQGRALLVAHVQL
SQAITQFSREACLRGKYRLDSAAVAEAGAADVGIGVVTLPAPGHSPQPAT
AEGLAGGAIVAHAAAFGNANGGTSATAAARRGHPRRIDDCTGGYGHLRAV
PAEDDERAAASLADRGGRGEGGLGRMSRAAADLAEVGRQLRRNGPRDDGT
TLGKRSSSRRSPNVTAAMSVLANSAIGTIANGCGDRRSGAAGGGDSRRDG
GMGRRNGGGGVDGGGASGSGSGCCNGSGGGDAMPAESGVLQADDPSMARI
CNILAQMEEMSHTLETVLHRRTTVAAIR
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mRNA from alignment at P-wetherbeei_contig5735:2045..3727+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5735.2.1 ID=mRNA_P-wetherbeei_contig5735.2.1|Name=mRNA_P-wetherbeei_contig5735.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1683bp|location=Sequence derived from alignment at P-wetherbeei_contig5735:2045..3727+ (Phaeothamnion wetherbeei SAG_119_79)
GGCCGTGTGGCTTCAGGGCCGGCGGCGCCGCGGCAGCCGCCGCCGCTTCC
GCCGCGAGCGTCAGCACGAGCGCTGCAGCGCGGAACGGAGACGGCGGGCG
AGAACGCGGACGACAGCGCCGCGGTAGAGGCGGCGCGCGCCGAAACAGCA
GCGGCATGCGCTGCTGCAAAAGATGCGCGGCGGCGGGCGGCCGCGCTGGA
AGAGAAGGTTGATGAGCTGAAGGAAGCGCTGCGACGACGAGACTTTGCAG
CAAGAACCGCTGCAGCTGCACATGACGCGGCTGGCATCAGCCATAGCGGC
GGTGTCGGCGACAGTGAGCGGCGGCGGAGTATGGTGAAGGAGCTGGCGGA
GCAAAGGACGCGGCTGGAGGACCTGCTGCGGGGCGTAGCCACGCTCACCC
GCGGATGCGACAAGCTGCTGCGAAGGTATGTCTTGGCTTTTTTCCCTTTT
TCCCCCTGGCGAAGGTGCGATCAAGATGGTCTTCGTCCCCTCTCGTCCTC
ATTTCTTGAAACGCTACGGGAGCTCGCCTGCTTACATTGTCGCTTGCATC
ATCAAGTTCATTGGTGAGAAATGCTGGAGCTTTTTCATGTGAAAGCCGAG
GCAATATCTCTACTACGACGATGGTGGATTAGGCTTTGCATCTTTGCCGT
TACAAACGCCCTTCTCTGGCAGGTACAAGGGCGCGCTGATGGGGCCGTCG
CAGCGCGACGGAGACGGCGGCGGTGCCGGCACCGACGGTGTCAACGACGA
TGACGCTACCTGGGCGAGAAGTGCAATCGAACCGCCGGCATGGGCGATGG
ATCTGGCGGCTCAGGGCCGCGCCCTGCTCGTGGCACACGTGCAGCTGTCG
CAGGCCATCACGCAGTTCAGCAGGGAGGCGTGCTTGCGCGGCAAATACCG
GCTAGATTCTGCCGCTGTCGCTGAAGCTGGCGCTGCCGATGTTGGCATTG
GTGTTGTGACGCTACCTGCACCCGGGCATTCGCCGCAGCCTGCAACAGCC
GAGGGGTTGGCGGGCGGGGCAATAGTGGCGCACGCTGCGGCCTTTGGCAA
TGCTAATGGTGGCACTTCGGCCACAGCCGCTGCTCGCAGAGGGCACCCCC
GCCGTATAGATGATTGCACGGGTGGGTATGGACATCTCCGCGCTGTTCCC
GCCGAAGACGACGAGCGTGCCGCCGCCAGTTTGGCCGACCGCGGCGGCCG
TGGCGAGGGCGGCCTTGGCCGCATGAGTCGAGCCGCAGCTGACCTCGCCG
AGGTTGGGAGGCAGTTGCGACGCAACGGCCCGCGAGACGATGGAACCACC
CTCGGGAAGCGTTCGTCCTCCCGCCGCAGTCCCAACGTGACGGCGGCGAT
GTCTGTGCTTGCCAACAGTGCCATTGGCACTATTGCCAATGGCTGCGGCG
ACCGTCGCAGCGGTGCCGCTGGTGGTGGCGACAGCAGGCGGGACGGCGGC
ATGGGCAGGCGCAACGGCGGCGGCGGTGTTGACGGCGGCGGCGCCAGCGG
CAGCGGTAGCGGCTGCTGTAATGGCAGCGGCGGCGGCGACGCCATGCCGG
CAGAATCCGGGGTGTTGCAAGCCGACGACCCGAGCATGGCGCGGATTTGC
AACATTCTCGCGCAGATGGAAGAGATGTCTCACACTCTCGAGACGGTGCT
GCATCGGCGGACTACGGTGGCGGCTATTCGCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5735:2045..3727+

>mRNA_P-wetherbeei_contig5735.2.1 ID=mRNA_P-wetherbeei_contig5735.2.1|Name=mRNA_P-wetherbeei_contig5735.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1434bp|location=Sequence derived from alignment at P-wetherbeei_contig5735:2045..3727+ (Phaeothamnion wetherbeei SAG_119_79)
GGCCGTGTGGCTTCAGGGCCGGCGGCGCCGCGGCAGCCGCCGCCGCTTCC
GCCGCGAGCGTCAGCACGAGCGCTGCAGCGCGGAACGGAGACGGCGGGCG
AGAACGCGGACGACAGCGCCGCGGTAGAGGCGGCGCGCGCCGAAACAGCA
GCGGCATGCGCTGCTGCAAAAGATGCGCGGCGGCGGGCGGCCGCGCTGGA
AGAGAAGGTTGATGAGCTGAAGGAAGCGCTGCGACGACGAGACTTTGCAG
CAAGAACCGCTGCAGCTGCACATGACGCGGCTGGCATCAGCCATAGCGGC
GGTGTCGGCGACAGTGAGCGGCGGCGGAGTATGGTGAAGGAGCTGGCGGA
GCAAAGGACGCGGCTGGAGGACCTGCTGCGGGGCGTAGCCACGCTCACCC
GCGGATGCGACAAGCTGCTGCGAAGGTACAAGGGCGCGCTGATGGGGCCG
TCGCAGCGCGACGGAGACGGCGGCGGTGCCGGCACCGACGGTGTCAACGA
CGATGACGCTACCTGGGCGAGAAGTGCAATCGAACCGCCGGCATGGGCGA
TGGATCTGGCGGCTCAGGGCCGCGCCCTGCTCGTGGCACACGTGCAGCTG
TCGCAGGCCATCACGCAGTTCAGCAGGGAGGCGTGCTTGCGCGGCAAATA
CCGGCTAGATTCTGCCGCTGTCGCTGAAGCTGGCGCTGCCGATGTTGGCA
TTGGTGTTGTGACGCTACCTGCACCCGGGCATTCGCCGCAGCCTGCAACA
GCCGAGGGGTTGGCGGGCGGGGCAATAGTGGCGCACGCTGCGGCCTTTGG
CAATGCTAATGGTGGCACTTCGGCCACAGCCGCTGCTCGCAGAGGGCACC
CCCGCCGTATAGATGATTGCACGGGTGGGTATGGACATCTCCGCGCTGTT
CCCGCCGAAGACGACGAGCGTGCCGCCGCCAGTTTGGCCGACCGCGGCGG
CCGTGGCGAGGGCGGCCTTGGCCGCATGAGTCGAGCCGCAGCTGACCTCG
CCGAGGTTGGGAGGCAGTTGCGACGCAACGGCCCGCGAGACGATGGAACC
ACCCTCGGGAAGCGTTCGTCCTCCCGCCGCAGTCCCAACGTGACGGCGGC
GATGTCTGTGCTTGCCAACAGTGCCATTGGCACTATTGCCAATGGCTGCG
GCGACCGTCGCAGCGGTGCCGCTGGTGGTGGCGACAGCAGGCGGGACGGC
GGCATGGGCAGGCGCAACGGCGGCGGCGGTGTTGACGGCGGCGGCGCCAG
CGGCAGCGGTAGCGGCTGCTGTAATGGCAGCGGCGGCGGCGACGCCATGC
CGGCAGAATCCGGGGTGTTGCAAGCCGACGACCCGAGCATGGCGCGGATT
TGCAACATTCTCGCGCAGATGGAAGAGATGTCTCACACTCTCGAGACGGT
GCTGCATCGGCGGACTACGGTGGCGGCTATTCGC
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