mRNA_P-wetherbeei_contig5733.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5733.1.1
Unique NamemRNA_P-wetherbeei_contig5733.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5733.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5733contigP-wetherbeei_contig5733:1034..2782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size910
Hectar predicted targeting categoryother localisation
Exons5
Cds size708
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5733.1.1prot_P-wetherbeei_contig5733.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5733 1034..2580 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186850.533864-CDS-P-wetherbeei_contig5733:1033..11891683186850.533864-CDS-P-wetherbeei_contig5733:1033..1189Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5733 1034..1189 -
1683186850.5527716-CDS-P-wetherbeei_contig5733:1456..15551683186850.5527716-CDS-P-wetherbeei_contig5733:1456..1555Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5733 1457..1555 -
1683186850.561968-CDS-P-wetherbeei_contig5733:1748..19941683186850.561968-CDS-P-wetherbeei_contig5733:1748..1994Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5733 1749..1994 -
1683186850.5724084-CDS-P-wetherbeei_contig5733:2150..22691683186850.5724084-CDS-P-wetherbeei_contig5733:2150..2269Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5733 2151..2269 -
1683186850.5827367-CDS-P-wetherbeei_contig5733:2492..25801683186850.5827367-CDS-P-wetherbeei_contig5733:2492..2580Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5733 2493..2580 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186850.5926514-UTR-P-wetherbeei_contig5733:2580..27821683186850.5926514-UTR-P-wetherbeei_contig5733:2580..2782Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5733 2581..2782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5733.1.1

>prot_P-wetherbeei_contig5733.1.1 ID=prot_P-wetherbeei_contig5733.1.1|Name=mRNA_P-wetherbeei_contig5733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=236bp
MSGTPQDDDLPSPDSQSEHAAAEGHALSAGSNWEARMTEGGQIFYVNHVT
KTTSWTPPPADAGVTSAISHPAVVAAEEKEMEKEAKGAAHPRAAADATHN
PGGRNQFNARFVRQFLAPVTGARAKSASTLERKKLEDYDTQECNLGVPNL
QAILRGPDDMDAPDRGFWTYRWPDSWGPTVVTSVTVDKERIIAMTAADEY
PTNPMLVKSAPLRYFQSIRMDRRRVLPYHGIFGFIK
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mRNA from alignment at P-wetherbeei_contig5733:1034..2782-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5733.1.1 ID=mRNA_P-wetherbeei_contig5733.1.1|Name=mRNA_P-wetherbeei_contig5733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1749bp|location=Sequence derived from alignment at P-wetherbeei_contig5733:1034..2782- (Phaeothamnion wetherbeei SAG_119_79)
GGTGGGTGTAACGGACTATCGAAAATGAAGTGCACAGATTTCGACCTACC
GAAGCTCTTTTAATAGTGCTGTACTCATCTGCCCTCCTGACCGGAAGACA
AAAGTCTGTTTGGCTAAAACTCGAGAACCTCGATCCATTTCTCCCCTCAA
AGCTTTCTTACGAACACGCGCTTCCACTAGCGAGCGACCAACTGTCGGAA
CGATGTCTGGTACACCGCAGGACGATGATTTGCCCTCGCCGGACTCGCAA
AGCGAGCATGCGGCAGCTGAAGGCCACGCCCTTTCGGCAGGTAAGGTGAT
TGTGTGTAACGCGCTCCTGCACCCAAAAATCCCCATCAGCCGTAATCACG
TGTTCTGACCCTCGACACGCTTCCATTTGAAAAGGAAAGCGCGCGAAGAA
GCAATCGCCATGTGAAAGAAAAACAAGCCAAACTTTTTTCATTCACCGGT
CCCTGACTAGCTAGCTGAGTATGCGCAATGCATCGTCGTTTGCCGTCTCT
CGCCCGCTATCAGGATCCAATTGGGAGGCCAGAATGACTGAGGGTGGACA
AATTTTCTACGTCAATCACGTTACGAAGACGACCTCGTGGACGCCGCCTC
CCGCGGACGCTGGCGTGACCTCCGCCATATCGGTGCGTCCGTTTCCATCT
ATCACCTTCCCATGCACGGCCAGGCGCTACTCGCGATATGGCGTTTGATC
GAATTCTGACTGCCAATACTGAAGCGCCCGCCCGCCAATCTCCCTCATTC
TGACGTTTTGCCCCGAGGCATGTCCCACCTCTTTTCAGCACCCCGCGGTG
GTCGCGGCGGAGGAAAAGGAGATGGAGAAGGAGGCAAAGGGGGCGGCACA
TCCACGCGCCGCGGCAGACGCAACACATAACCCGGGCGGCCGGAACCAGT
TCAATGCGCGGTTCGTCCGGCAGTTTCTCGCGCCGGTGACGGGTGCCCGC
GCCAAGTCAGCGTCGACGCTGGAGCGGAAGAAGCTGGAGGACTATGACAC
GCAGGAATGTAACCTCGGCGTCCCCAACCTGCAGGTGTGTATGCAGGAAG
GGGTGGAAACCAGGACCCAAGAATGGTCATTTGCTCCCACACTTTGTGAT
AAAGGTCCCCCCTTATCCTTTTTAGGCCGCCGAAATCTCCAAGCAGCTGC
AGCTGCTGCTGCTGCTGCTTATATCAGCAGGCGACACATTTCGCTTTCGC
TCGTGGCTGTCTTTCTTTTTCCCCAAGGCGATCTTGCGGGGGCCGGACGA
CATGGACGCCCCCGACCGCGGCTTCTGGACCTATCGCTGGCCCGACTCGT
GGGGACCGACCGTCGTCACGTCGGTGGTGAGGGAGCTATCCTGTTTACCT
CTTTACCATTGTGCTCCGTTTCGGTTTCGCCTCCCAGCAACAATAACAGC
GTACGCCTAGCCTCCGTATCTCTTCTTTCTGCCGTTTCGCCACCCTAGCC
CTGACTTGCTCCCTTCATGATCTTTCGGCTCCCTTCCTCCTTGCTTCCCT
TGGCACTGCCGCCGCCGCTGCCGCCGCCGCCGCCCTCCGGTGTCCTCTCG
CCGCTGTCGCCCCTCCCTTTTCCTCCCTCCCCACTGACCGCAGACGGTGG
ACAAGGAGCGGATCATCGCCATGACAGCGGCGGACGAATACCCGACCAAC
CCTATGCTGGTGAAGAGTGCCCCGCTGCGCTACTTCCAGTCCATCCGCAT
GGACCGCCGCCGCGTGCTGCCCTACCATGGCATCTTCGGCTTCATCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5733:1034..2782-

>mRNA_P-wetherbeei_contig5733.1.1 ID=mRNA_P-wetherbeei_contig5733.1.1|Name=mRNA_P-wetherbeei_contig5733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=708bp|location=Sequence derived from alignment at P-wetherbeei_contig5733:1034..2782- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTGGTACACCGCAGGACGATGATTTGCCCTCGCCGGACTCGCAAAG
CGAGCATGCGGCAGCTGAAGGCCACGCCCTTTCGGCAGGATCCAATTGGG
AGGCCAGAATGACTGAGGGTGGACAAATTTTCTACGTCAATCACGTTACG
AAGACGACCTCGTGGACGCCGCCTCCCGCGGACGCTGGCGTGACCTCCGC
CATATCGCACCCCGCGGTGGTCGCGGCGGAGGAAAAGGAGATGGAGAAGG
AGGCAAAGGGGGCGGCACATCCACGCGCCGCGGCAGACGCAACACATAAC
CCGGGCGGCCGGAACCAGTTCAATGCGCGGTTCGTCCGGCAGTTTCTCGC
GCCGGTGACGGGTGCCCGCGCCAAGTCAGCGTCGACGCTGGAGCGGAAGA
AGCTGGAGGACTATGACACGCAGGAATGTAACCTCGGCGTCCCCAACCTG
CAGGCGATCTTGCGGGGGCCGGACGACATGGACGCCCCCGACCGCGGCTT
CTGGACCTATCGCTGGCCCGACTCGTGGGGACCGACCGTCGTCACGTCGG
TGACGGTGGACAAGGAGCGGATCATCGCCATGACAGCGGCGGACGAATAC
CCGACCAACCCTATGCTGGTGAAGAGTGCCCCGCTGCGCTACTTCCAGTC
CATCCGCATGGACCGCCGCCGCGTGCTGCCCTACCATGGCATCTTCGGCT
TCATCAAG
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