mRNA_P-wetherbeei_contig57290.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57290.1.1
Unique NamemRNA_P-wetherbeei_contig57290.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57290.1.1 vs. uniprot
Match: A0A3D5DE01_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DE01_9GAMM)

HSP 1 Score: 65.9 bits (159), Expect = 2.150e-11
Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = 1
Query:   55 QGGAYAYPNAGQSEQQLSKDRYECHQWSVSQTGFDPSTAPPL 180
            Q   +AYP  GQSE+Q+S+D++ECHQW+V QTGF+P+TAPPL
Sbjct:   26 QSQIFAYPIGGQSEEQVSRDKFECHQWAVGQTGFNPATAPPL 67          
BLAST of mRNA_P-wetherbeei_contig57290.1.1 vs. uniprot
Match: A0A661CBZ7_9GAMM (Gly-zipper_Omp domain-containing protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661CBZ7_9GAMM)

HSP 1 Score: 65.1 bits (157), Expect = 3.910e-10
Identity = 52/105 (49.52%), Postives = 68/105 (64.76%), Query Frame = 1
Query:   28 LGTATVPAQQGGAYAYPNAGQSEQQLSKDRYECHQWSVSQTGFDPSTAPPLASATXXXXXXXXXXGNQPQTQQPSAGGFLGIGNGGMLPGSGVMGDAATGAALGA 342
            +G A+     GG YAYP+AGQS++Q++KD+Y CH W+V +TG+DP+ A   +S  XXXXXXXXXXG+          G+ G G  G     GV+ DAA GAALGA
Sbjct:    1 MGPASAAGIGGGVYAYPSAGQSQEQVNKDKYYCHNWAVIETGYDPTVA---SSXXXXXXXXXXXXGSS---------GYFGSGETGE---GGVVKDAAGGAALGA 90          
BLAST of mRNA_P-wetherbeei_contig57290.1.1 vs. uniprot
Match: A0A2N8SUE8_PSEST (Uncharacterized protein n=3 Tax=Pseudomonas stutzeri TaxID=316 RepID=A0A2N8SUE8_PSEST)

HSP 1 Score: 62.8 bits (151), Expect = 6.840e-10
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 1
Query:   43 VPAQQGGAY---AYPNAGQSEQQLSKDRYECHQWSVSQTGFDPSTAPPLASAT 192
            VPA + G Y   AYP  GQS +Q S+DRYECH W+VSQ+GFDP+TA     AT
Sbjct:   29 VPASEAGRYDVIAYPAKGQSAEQQSRDRYECHTWAVSQSGFDPATAQSAPPAT 81          
BLAST of mRNA_P-wetherbeei_contig57290.1.1 vs. uniprot
Match: W8RXX1_PSEST (Uncharacterized protein n=2 Tax=Pseudomonas stutzeri TaxID=316 RepID=W8RXX1_PSEST)

HSP 1 Score: 60.1 bits (144), Expect = 7.390e-9
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   43 VPAQQGGAY---AYPNAGQSEQQLSKDRYECHQWSVSQTGFDPSTAPPLASAT 192
            V   + G Y   AYP +GQS +Q S+DRYECH WSVSQ+GFDP+TA     AT
Sbjct:   29 VQVSEAGRYDVIAYPASGQSAEQQSRDRYECHTWSVSQSGFDPATAQSAPPAT 81          
BLAST of mRNA_P-wetherbeei_contig57290.1.1 vs. uniprot
Match: UPI001F1DA398 (YMGG-like glycine zipper-containing protein n=2 Tax=Methylomicrobium sp. RS1 TaxID=2802053 RepID=UPI001F1DA398)

HSP 1 Score: 60.5 bits (145), Expect = 1.670e-8
Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = 1
Query:    7 LVMTLLALGTATVPAQQGGAYAYPNAGQSEQQLSKDRYECHQWSVSQTGFDPSTA 171
            L +   +LG   V   Q     YP  GQS +QLSKDRYECH W+V Q+GFDPSTA
Sbjct:    9 LSLIAASLGLLAVVPAQADIMIYPMKGQSSEQLSKDRYECHVWAVQQSGFDPSTA 63          
BLAST of mRNA_P-wetherbeei_contig57290.1.1 vs. uniprot
Match: A0A562QAH6_9PSED (Uncharacterized protein n=1 Tax=Pseudomonas duriflava TaxID=459528 RepID=A0A562QAH6_9PSED)

HSP 1 Score: 59.3 bits (142), Expect = 5.430e-8
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   37 ATVPAQQGGAYAYPNAGQSEQQLSKDRYECHQWSVSQTGFDPSTA---PPLASA 189
            ATV +Q     AYP  GQ+ +Q  +DRYECH+W+VSQ+GFDP+TA   PP+ S+
Sbjct:   94 ATVSSQTYDVIAYPARGQTVEQQGQDRYECHKWAVSQSGFDPATANTAPPVTSS 147          
BLAST of mRNA_P-wetherbeei_contig57290.1.1 vs. uniprot
Match: A0A7Y4W161_9GAMM (Gly-zipper_OmpA domain-containing protein n=1 Tax=Methylococcaceae bacterium TaxID=1933926 RepID=A0A7Y4W161_9GAMM)

HSP 1 Score: 58.5 bits (140), Expect = 8.700e-8
Identity = 28/61 (45.90%), Postives = 35/61 (57.38%), Query Frame = 1
Query:   10 VMTLLALGTATVPAQQGGAYAYPNAGQSEQQLSKDRYECHQWSVSQTGFDPSTAPPLASAT 192
            + T L +    V     G   YP  GQS  QLSKDRYECH W+V Q+GFDPS+  P   ++
Sbjct:   10 ITTTLLMAALPVSVFAQGVMVYPAQGQSPDQLSKDRYECHTWAVQQSGFDPSSGAPAPQSS 70          
BLAST of mRNA_P-wetherbeei_contig57290.1.1 vs. uniprot
Match: UPI0010A64F5F (DUF6515 family protein n=4 Tax=Pseudomonas TaxID=286 RepID=UPI0010A64F5F)

HSP 1 Score: 59.7 bits (143), Expect = 1.160e-7
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 1
Query:   70 AYPNAGQSEQQLSKDRYECHQWSVSQTGFDPSTA 171
            AYP AGQS +QL +DRYECH+W+V QTGFDP+TA
Sbjct:  193 AYPAAGQSPEQLDRDRYECHRWAVQQTGFDPATA 226          
BLAST of mRNA_P-wetherbeei_contig57290.1.1 vs. uniprot
Match: W9TIA4_9PSED (Uncharacterized protein n=3 Tax=Pseudomonas TaxID=286 RepID=W9TIA4_9PSED)

HSP 1 Score: 58.2 bits (139), Expect = 1.470e-7
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1
Query:   43 VPAQQGGAY---AYPNAGQSEQQLSKDRYECHQWSVSQTGFDPSTAPPLASAT 192
            +PA +   Y   AYP  GQS +Q S+DRYECH W+VSQ+GFDP+TA    +A+
Sbjct:   93 LPASEATRYDVIAYPAKGQSAEQQSRDRYECHSWAVSQSGFDPATAQSAPAAS 145          
BLAST of mRNA_P-wetherbeei_contig57290.1.1 vs. uniprot
Match: UPI000409B71C (DUF6515 family protein n=5 Tax=Pseudomonas TaxID=286 RepID=UPI000409B71C)

HSP 1 Score: 58.9 bits (141), Expect = 2.700e-7
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1
Query:   46 PAQQGG--AYAYPNAGQSEQQLSKDRYECHQWSVSQTGFDPSTA 171
            PA+QGG    AYP  GQ  QQ  +DRY+CH+W+VSQ+GFDP+TA
Sbjct:  215 PAEQGGYDVVAYPMYGQGPQQQEQDRYQCHRWAVSQSGFDPATA 258          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57290.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DE01_9GAMM2.150e-1164.29Uncharacterized protein (Fragment) n=1 Tax=Gammapr... [more]
A0A661CBZ7_9GAMM3.910e-1049.52Gly-zipper_Omp domain-containing protein n=2 Tax=G... [more]
A0A2N8SUE8_PSEST6.840e-1058.49Uncharacterized protein n=3 Tax=Pseudomonas stutze... [more]
W8RXX1_PSEST7.390e-956.60Uncharacterized protein n=2 Tax=Pseudomonas stutze... [more]
UPI001F1DA3981.670e-854.55YMGG-like glycine zipper-containing protein n=2 Ta... [more]
A0A562QAH6_9PSED5.430e-853.70Uncharacterized protein n=1 Tax=Pseudomonas durifl... [more]
A0A7Y4W161_9GAMM8.700e-845.90Gly-zipper_OmpA domain-containing protein n=1 Tax=... [more]
UPI0010A64F5F1.160e-773.53DUF6515 family protein n=4 Tax=Pseudomonas TaxID=2... [more]
W9TIA4_9PSED1.470e-752.83Uncharacterized protein n=3 Tax=Pseudomonas TaxID=... [more]
UPI000409B71C2.700e-761.36DUF6515 family protein n=5 Tax=Pseudomonas TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57290contigP-wetherbeei_contig57290:21..512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1163398.AJJP01000080_gene4967
Model size492
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.26e-09
EggNOG OGs2DBDT@1|root,2Z8NY@2|Bacteria,1N7S2@1224|Proteobacteria,1RTZE@1236|Gammaproteobacteria
Cds size480
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186849.9943337-UTR-P-wetherbeei_contig57290:20..321683186849.9943337-UTR-P-wetherbeei_contig57290:20..32Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig57290 21..32 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186850.0058942-CDS-P-wetherbeei_contig57290:32..5121683186850.0058942-CDS-P-wetherbeei_contig57290:32..512Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57290 33..512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57290.1.1prot_P-wetherbeei_contig57290.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57290 33..512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57290.1.1

>prot_P-wetherbeei_contig57290.1.1 ID=prot_P-wetherbeei_contig57290.1.1|Name=mRNA_P-wetherbeei_contig57290.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
MTLLALGTATVPAQQGGAYAYPNAGQSEQQLSKDRYECHQWSVSQTGFDP
STAPPLASATPPPPPGGGYYGNQPQTQQPSAGGFLGIGNGGMLPGSGVMG
DAATGAALGAAGGAIAGNAGQGAAIGAVSSTLLGAFSRATNKPAAPPPQT
ADHTQQQQPA
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mRNA from alignment at P-wetherbeei_contig57290:21..512+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57290.1.1 ID=mRNA_P-wetherbeei_contig57290.1.1|Name=mRNA_P-wetherbeei_contig57290.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig57290:21..512+ (Phaeothamnion wetherbeei SAG_119_79)
GCCCCCCTCGTCATGACCTTGTTGGCGTTGGGTACGGCAACTGTCCCTGC CCAGCAGGGTGGTGCATACGCCTATCCAAATGCAGGCCAGTCCGAACAAC AGTTATCCAAGGATCGCTACGAGTGCCATCAATGGTCGGTCTCGCAAACG GGCTTCGATCCGAGCACTGCGCCACCATTGGCCAGCGCTACACCGCCGCC CCCGCCGGGCGGTGGCTACTACGGCAATCAGCCGCAAACGCAGCAACCCA GTGCAGGTGGGTTTCTTGGCATTGGCAATGGCGGCATGTTGCCCGGTAGT GGCGTGATGGGCGATGCCGCCACGGGCGCAGCCTTGGGCGCCGCCGGCGG CGCGATTGCAGGGAATGCGGGGCAGGGTGCGGCGATTGGCGCGGTGTCAT CGACGCTACTCGGCGCCTTCAGCCGCGCCACCAACAAACCGGCAGCCCCG CCGCCACAAACGGCCGATCACACTCAGCAGCAGCAGCCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57290:21..512+

>mRNA_P-wetherbeei_contig57290.1.1 ID=mRNA_P-wetherbeei_contig57290.1.1|Name=mRNA_P-wetherbeei_contig57290.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig57290:21..512+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCTTGTTGGCGTTGGGTACGGCAACTGTCCCTGCCCAGCAGGGTGG
TGCATACGCCTATCCAAATGCAGGCCAGTCCGAACAACAGTTATCCAAGG
ATCGCTACGAGTGCCATCAATGGTCGGTCTCGCAAACGGGCTTCGATCCG
AGCACTGCGCCACCATTGGCCAGCGCTACACCGCCGCCCCCGCCGGGCGG
TGGCTACTACGGCAATCAGCCGCAAACGCAGCAACCCAGTGCAGGTGGGT
TTCTTGGCATTGGCAATGGCGGCATGTTGCCCGGTAGTGGCGTGATGGGC
GATGCCGCCACGGGCGCAGCCTTGGGCGCCGCCGGCGGCGCGATTGCAGG
GAATGCGGGGCAGGGTGCGGCGATTGGCGCGGTGTCATCGACGCTACTCG
GCGCCTTCAGCCGCGCCACCAACAAACCGGCAGCCCCGCCGCCACAAACG
GCCGATCACACTCAGCAGCAGCAGCCCGCC
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