mRNA_P-wetherbeei_contig5729.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5729.2.1
Unique NamemRNA_P-wetherbeei_contig5729.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5729.2.1 vs. uniprot
Match: A0A369XK98_9PROT (Uncharacterized protein n=1 Tax=Candidatus Accumulibacter phosphatis TaxID=327160 RepID=A0A369XK98_9PROT)

HSP 1 Score: 117 bits (293), Expect = 3.340e-33
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 1
Query:   13 MKDRYDFSKGVHGKFYRPDAVFRLPVYLDEKVEKYLAAKADAKGVELSDLVNDLLKREIEIIEAVK 210
            MKD YDFSKGV GKFY  DAV RLPVYLDE+VE+YLAAKADAKGV+LSDLVNDLLKREIEIIEAVK
Sbjct:    1 MKDHYDFSKGVRGKFYASDAVVRLPVYLDEQVERYLAAKADAKGVDLSDLVNDLLKREIEIIEAVK 66          
BLAST of mRNA_P-wetherbeei_contig5729.2.1 vs. uniprot
Match: A0A1F3WZS6_9PROT (Uncharacterized protein n=2 Tax=Betaproteobacteria bacterium RBG_16_56_24 TaxID=1797475 RepID=A0A1F3WZS6_9PROT)

HSP 1 Score: 114 bits (284), Expect = 7.900e-32
Identity = 53/66 (80.30%), Postives = 62/66 (93.94%), Query Frame = 1
Query:   13 MKDRYDFSKGVHGKFYRPDAVFRLPVYLDEKVEKYLAAKADAKGVELSDLVNDLLKREIEIIEAVK 210
            MK+RYDFSKG  GKFY+PDAVFRLPVYLDEKV+ YLAA+ADAKGV+LS+LVNDLLK++IE+IEA K
Sbjct:    1 MKERYDFSKGERGKFYQPDAVFRLPVYLDEKVQTYLAARADAKGVDLSELVNDLLKKDIELIEAAK 66          
BLAST of mRNA_P-wetherbeei_contig5729.2.1 vs. uniprot
Match: A0A011P206_ACCSB (Uncharacterized protein n=2 Tax=unclassified Candidatus Accumulibacter TaxID=2619054 RepID=A0A011P206_ACCSB)

HSP 1 Score: 113 bits (283), Expect = 1.120e-31
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 1
Query:   13 MKDRYDFSKGVHGKFYRPDAVFRLPVYLDEKVEKYLAAKADAKGVELSDLVNDLLKREIEIIEAVK 210
            MKD YDFSKG  GKFY PDA FRLPVYLDE+VE+YLAA+ADAKGV+LSDLVN+LLK EIEIIEAVK
Sbjct:    1 MKDHYDFSKGERGKFYAPDADFRLPVYLDEQVERYLAARADAKGVDLSDLVNELLKHEIEIIEAVK 66          
BLAST of mRNA_P-wetherbeei_contig5729.2.1 vs. uniprot
Match: A0A7V7XKW1_9RHOO (Uncharacterized protein n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A7V7XKW1_9RHOO)

HSP 1 Score: 110 bits (274), Expect = 2.650e-30
Identity = 50/66 (75.76%), Postives = 61/66 (92.42%), Query Frame = 1
Query:   13 MKDRYDFSKGVHGKFYRPDAVFRLPVYLDEKVEKYLAAKADAKGVELSDLVNDLLKREIEIIEAVK 210
            MKD+YDFSKG  GKFYRPDAVFRLPVYLDEKV+ YLAAKADAKGVEL++LVN++L+++IE+IE  +
Sbjct:    1 MKDQYDFSKGQRGKFYRPDAVFRLPVYLDEKVQDYLAAKADAKGVELAELVNEMLRKDIELIEMTR 66          
BLAST of mRNA_P-wetherbeei_contig5729.2.1 vs. uniprot
Match: A0A846TD87_9CYAN (Uncharacterized protein n=1 Tax=Synechococcaceae cyanobacterium SM1_2_3 TaxID=2720456 RepID=A0A846TD87_9CYAN)

HSP 1 Score: 107 bits (266), Expect = 4.530e-29
Identity = 50/62 (80.65%), Postives = 57/62 (91.94%), Query Frame = 1
Query:   13 MKDRYDFSKGVHGKFYRPDAVFRLPVYLDEKVEKYLAAKADAKGVELSDLVNDLLKREIEII 198
            MK  YDFSKGV G+FYRPDAVFRLP+YLDE+VE YL+AKADAKGV+LSDLVN+LLKR+IE I
Sbjct:    1 MKKHYDFSKGVQGQFYRPDAVFRLPIYLDEEVEHYLSAKADAKGVDLSDLVNELLKRDIETI 62          
BLAST of mRNA_P-wetherbeei_contig5729.2.1 vs. uniprot
Match: A0A5C9BCD6_9PROT (Uncharacterized protein n=1 Tax=Gallionellaceae bacterium TaxID=2052162 RepID=A0A5C9BCD6_9PROT)

HSP 1 Score: 103 bits (257), Expect = 1.040e-27
Identity = 46/66 (69.70%), Postives = 59/66 (89.39%), Query Frame = 1
Query:   13 MKDRYDFSKGVHGKFYRPDAVFRLPVYLDEKVEKYLAAKADAKGVELSDLVNDLLKREIEIIEAVK 210
            MKD YDFSKGV GKFY PDAVFRLPVYLDE+V+ YL+A+A+A+GV L++LVND+LK++IE+IE  +
Sbjct:    1 MKDHYDFSKGVRGKFYEPDAVFRLPVYLDEQVQAYLSARAEARGVGLAELVNDMLKKDIELIEMAR 66          
BLAST of mRNA_P-wetherbeei_contig5729.2.1 vs. uniprot
Match: A0A3D6DWX6_9PROT (Uncharacterized protein n=1 Tax=Candidatus Accumulibacter sp. TaxID=2053492 RepID=A0A3D6DWX6_9PROT)

HSP 1 Score: 102 bits (254), Expect = 2.990e-27
Identity = 52/66 (78.79%), Postives = 57/66 (86.36%), Query Frame = 1
Query:   13 MKDRYDFSKGVHGKFYRPDAVFRLPVYLDEKVEKYLAAKADAKGVELSDLVNDLLKREIEIIEAVK 210
            MKDR DFSKGV GKFY PDAVFR P  LDE VE+YLAAKADAKGV+LS LVNDLLK +IEI+EAV+
Sbjct:    1 MKDRDDFSKGVRGKFYAPDAVFRWPDCLDEPVERYLAAKADAKGVDLSFLVNDLLKCKIEIVEAVR 66          
BLAST of mRNA_P-wetherbeei_contig5729.2.1 vs. uniprot
Match: A0A1H2V5H8_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonas communis TaxID=44574 RepID=A0A1H2V5H8_9PROT)

HSP 1 Score: 95.9 bits (237), Expect = 1.170e-24
Identity = 42/66 (63.64%), Postives = 56/66 (84.85%), Query Frame = 1
Query:   13 MKDRYDFSKGVHGKFYRPDAVFRLPVYLDEKVEKYLAAKADAKGVELSDLVNDLLKREIEIIEAVK 210
            MKD YDFSKGV GKFYRP+A   LP+YLDE V  YL++KA AKG+E++D+VND+L+++I++IE VK
Sbjct:    1 MKDEYDFSKGVRGKFYRPNAKSNLPIYLDEDVFDYLSSKAKAKGIEVNDMVNDILRKDIDLIEGVK 66          
BLAST of mRNA_P-wetherbeei_contig5729.2.1 vs. uniprot
Match: A0A0F2P2N1_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium BRH_c0 TaxID=1629722 RepID=A0A0F2P2N1_9GAMM)

HSP 1 Score: 88.6 bits (218), Expect = 9.260e-22
Identity = 39/66 (59.09%), Postives = 53/66 (80.30%), Query Frame = 1
Query:   13 MKDRYDFSKGVHGKFYRPDAVFRLPVYLDEKVEKYLAAKADAKGVELSDLVNDLLKREIEIIEAVK 210
            M+D YDFSKGV GKFY+PDA    P+YL+ +V  Y + +A++KGV+++ LVNDLLKR+IE+IE VK
Sbjct:    1 MRDDYDFSKGVRGKFYQPDASHNFPIYLEAEVLDYFSKRAESKGVDVNSLVNDLLKRDIELIEGVK 66          
BLAST of mRNA_P-wetherbeei_contig5729.2.1 vs. uniprot
Match: W4LE01_9BACT (Uncharacterized protein n=1 Tax=Candidatus Entotheonella factor TaxID=1429438 RepID=W4LE01_9BACT)

HSP 1 Score: 87.4 bits (215), Expect = 2.660e-21
Identity = 39/66 (59.09%), Postives = 53/66 (80.30%), Query Frame = 1
Query:   13 MKDRYDFSKGVHGKFYRPDAVFRLPVYLDEKVEKYLAAKADAKGVELSDLVNDLLKREIEIIEAVK 210
            M+  YDFS+G  GKFY+PDA F LPVYL+E+V  YL  +A +KGV+L+D VND+LK++I +IE+VK
Sbjct:    1 MRPEYDFSQGERGKFYQPDAQFYLPVYLEEEVLNYLRERAQSKGVDLNDFVNDILKKDIALIESVK 66          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5729.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A369XK98_9PROT3.340e-3387.88Uncharacterized protein n=1 Tax=Candidatus Accumul... [more]
A0A1F3WZS6_9PROT7.900e-3280.30Uncharacterized protein n=2 Tax=Betaproteobacteria... [more]
A0A011P206_ACCSB1.120e-3183.33Uncharacterized protein n=2 Tax=unclassified Candi... [more]
A0A7V7XKW1_9RHOO2.650e-3075.76Uncharacterized protein n=1 Tax=Rhodocyclaceae bac... [more]
A0A846TD87_9CYAN4.530e-2980.65Uncharacterized protein n=1 Tax=Synechococcaceae c... [more]
A0A5C9BCD6_9PROT1.040e-2769.70Uncharacterized protein n=1 Tax=Gallionellaceae ba... [more]
A0A3D6DWX6_9PROT2.990e-2778.79Uncharacterized protein n=1 Tax=Candidatus Accumul... [more]
A0A1H2V5H8_9PROT1.170e-2463.64Uncharacterized protein n=1 Tax=Nitrosomonas commu... [more]
A0A0F2P2N1_9GAMM9.260e-2259.09Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
W4LE01_9BACT2.660e-2159.09Uncharacterized protein n=1 Tax=Candidatus Entothe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5729contigP-wetherbeei_contig5729:1259..1471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1454004.AW11_01861
Model size213
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.1e-32
EggNOG OGs2EMFR@1|root,33F4G@2|Bacteria,1NJ55@1224|Proteobacteria
Cds size201
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186849.8832073-UTR-P-wetherbeei_contig5729:1258..12701683186849.8832073-UTR-P-wetherbeei_contig5729:1258..1270Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5729 1259..1270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186849.892269-CDS-P-wetherbeei_contig5729:1270..14711683186849.892269-CDS-P-wetherbeei_contig5729:1270..1471Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5729 1271..1471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5729.2.1prot_P-wetherbeei_contig5729.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5729 1271..1471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5729.2.1

>prot_P-wetherbeei_contig5729.2.1 ID=prot_P-wetherbeei_contig5729.2.1|Name=mRNA_P-wetherbeei_contig5729.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=67bp
MKDRYDFSKGVHGKFYRPDAVFRLPVYLDEKVEKYLAAKADAKGVELSDL
VNDLLKREIEIIEAVK*
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mRNA from alignment at P-wetherbeei_contig5729:1259..1471+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5729.2.1 ID=mRNA_P-wetherbeei_contig5729.2.1|Name=mRNA_P-wetherbeei_contig5729.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig5729:1259..1471+ (Phaeothamnion wetherbeei SAG_119_79)
GAAGGTGATGCAATGAAGGACCGTTATGATTTTTCCAAGGGAGTGCACGG CAAGTTTTACCGCCCGGATGCGGTGTTCCGCCTGCCCGTATATCTTGATG AGAAAGTAGAAAAATATCTTGCCGCCAAAGCGGACGCCAAGGGTGTGGAG CTGTCCGATTTGGTGAACGATCTGCTCAAGCGCGAGATCGAGATTATTGA GGCGGTGAAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5729:1259..1471+

>mRNA_P-wetherbeei_contig5729.2.1 ID=mRNA_P-wetherbeei_contig5729.2.1|Name=mRNA_P-wetherbeei_contig5729.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig5729:1259..1471+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGACCGTTATGATTTTTCCAAGGGAGTGCACGGCAAGTTTTACCG
CCCGGATGCGGTGTTCCGCCTGCCCGTATATCTTGATGAGAAAGTAGAAA
AATATCTTGCCGCCAAAGCGGACGCCAAGGGTGTGGAGCTGTCCGATTTG
GTGAACGATCTGCTCAAGCGCGAGATCGAGATTATTGAGGCGGTGAAGTA
G
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