mRNA_P-wetherbeei_contig5728.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5728.2.1
Unique NamemRNA_P-wetherbeei_contig5728.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5728.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5728contigP-wetherbeei_contig5728:2635..3454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size524
Hectar predicted targeting categoryother localisation
Exons2
Cds size282
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186849.6801217-UTR-P-wetherbeei_contig5728:2634..26521683186849.6801217-UTR-P-wetherbeei_contig5728:2634..2652Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5728 2635..2652 -
1683186849.7157984-UTR-P-wetherbeei_contig5728:3230..34541683186849.7157984-UTR-P-wetherbeei_contig5728:3230..3454Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5728 3231..3454 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186849.693193-CDS-P-wetherbeei_contig5728:2652..29101683186849.693193-CDS-P-wetherbeei_contig5728:2652..2910Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5728 2653..2910 -
1683186849.7045734-CDS-P-wetherbeei_contig5728:3206..32301683186849.7045734-CDS-P-wetherbeei_contig5728:3206..3230Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5728 3207..3230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5728.2.1prot_P-wetherbeei_contig5728.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5728 2653..3230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5728.2.1

>prot_P-wetherbeei_contig5728.2.1 ID=prot_P-wetherbeei_contig5728.2.1|Name=mRNA_P-wetherbeei_contig5728.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
MMNWMLNKMKYVEYPPAGPRGMTPQVHAQQIYERNEARRREKAAAAAEQA
AAAARAAEEQARAEARNRGWRKWIPFGGAGTAGRNAEQQRPAA*
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mRNA from alignment at P-wetherbeei_contig5728:2635..3454-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5728.2.1 ID=mRNA_P-wetherbeei_contig5728.2.1|Name=mRNA_P-wetherbeei_contig5728.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=820bp|location=Sequence derived from alignment at P-wetherbeei_contig5728:2635..3454- (Phaeothamnion wetherbeei SAG_119_79)
AATATCCGTCCCTCCTCAACCATGACTGCTCAGCACGGAAGGTCGAGAGT
GAAGCTCGAAGCATTCAAGTTTAGCGTGTATCTGATAGGTGAGTAGACAT
ACCAGTACCGTACCCCCTTCTGCACGGGTGTCGTCCTGGATCAAAATGTC
GAGAGGAAATTTCTTCGTCATTCCCCTCCCGCACAGTGCCAGTGGCAGCA
ACAGTCATCTACAACAACCCAAAGATGATGAACTGGATGCTAAACAAGGT
AAGCGCATCGGGTAAATGTAGCCCACATTTCTCTGGAAAGGATTTTGGCG
CCAAACTGGGTGTTGCCGCTGCGTCACTTTGTTGGTAAGGCGCGAACTTG
TTGATTGCCAGTGGTGTGCGAGAGACGTGCAGCGCTTCACAGCGGAGAAT
TAACAAGGGCATCTTTACCCCGAATGCTGATCGGGTCAGCACTTACAACT
GCAGCTCATCACGCAGCCGGTGCACAACTTTGTCTCACCGATCCCCGCTC
CTTTGCCACCTTGCCGGCTTGCAACTGCAAAATCGATTCGGCAGATGAAG
TACGTAGAATATCCACCGGCCGGGCCGCGGGGCATGACCCCCCAGGTGCA
CGCCCAACAGATCTACGAGCGAAATGAGGCGCGGCGGCGGGAAAAGGCGG
CGGCGGCGGCGGAGCAGGCGGCCGCGGCGGCGCGGGCGGCAGAGGAGCAA
GCAAGGGCGGAGGCGCGAAACCGCGGGTGGCGGAAATGGATTCCGTTCGG
TGGGGCGGGAACCGCAGGCAGGAATGCCGAGCAACAACGCCCCGCTGCTT
GACAAAATACTTGAATAAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5728:2635..3454-

>mRNA_P-wetherbeei_contig5728.2.1 ID=mRNA_P-wetherbeei_contig5728.2.1|Name=mRNA_P-wetherbeei_contig5728.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig5728:2635..3454- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGAACTGGATGCTAAACAAGATGAAGTACGTAGAATATCCACCGGC
CGGGCCGCGGGGCATGACCCCCCAGGTGCACGCCCAACAGATCTACGAGC
GAAATGAGGCGCGGCGGCGGGAAAAGGCGGCGGCGGCGGCGGAGCAGGCG
GCCGCGGCGGCGCGGGCGGCAGAGGAGCAAGCAAGGGCGGAGGCGCGAAA
CCGCGGGTGGCGGAAATGGATTCCGTTCGGTGGGGCGGGAACCGCAGGCA
GGAATGCCGAGCAACAACGCCCCGCTGCTTGA
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