mRNA_P-wetherbeei_contig57251.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57251.2.1
Unique NamemRNA_P-wetherbeei_contig57251.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57251.2.1 vs. uniprot
Match: A0A2E9SM38_9GAMM (Uncharacterized protein n=1 Tax=Spongiibacter sp. TaxID=2024860 RepID=A0A2E9SM38_9GAMM)

HSP 1 Score: 105 bits (263), Expect = 4.880e-24
Identity = 54/102 (52.94%), Postives = 66/102 (64.71%), Query Frame = 1
Query:   70 RTLYLHIGCGKTGSSALQVWLNHQADVLRRLGVDYPSFGRRKLDDYAITSGNGKKLIDAFAAGQGEALLQKLARSSCDKVFLSSEAFQGMTVESLEELKAQA 375
            RTLYLHIGCGKTGSSALQVWLN  ++ L RLG+ YP FG+R  +DY ITSGNG  L+++         L  +     D V  SSEAFQ ++   LE+L A A
Sbjct:    3 RTLYLHIGCGKTGSSALQVWLNQNSEYLARLGISYPLFGQRIENDYLITSGNGVHLVNSLKNDNASDFLSNVYSDGFDYVLFSSEAFQSLSDSELEKLIAIA 104          
BLAST of mRNA_P-wetherbeei_contig57251.2.1 vs. uniprot
Match: UPI001FFC748E (hypothetical protein n=1 Tax=Thauera aromatica TaxID=59405 RepID=UPI001FFC748E)

HSP 1 Score: 103 bits (257), Expect = 3.140e-23
Identity = 56/102 (54.90%), Postives = 66/102 (64.71%), Query Frame = 1
Query:   70 RTLYLHIGCGKTGSSALQVWLNHQADVLRRLGVDYPSFGRRKLDDYAITSGNGKKLIDAFAAGQGEALLQKLARSSCDKVFLSSEAFQGMTVESLEELKAQA 375
            R LYLHIGCGKTGSSALQVWLN     L++ G+ YP FG +  DDY ITSGNG  LI+A  +G     LQKL      KV LSSEAFQ ++   + EL + A
Sbjct:    3 RFLYLHIGCGKTGSSALQVWLNQNTAHLQQAGILYPVFGDQIKDDYQITSGNGVHLINALKSGIALEFLQKLYTGDVTKVLLSSEAFQILSENEINELISAA 104          
BLAST of mRNA_P-wetherbeei_contig57251.2.1 vs. uniprot
Match: UPI0019642DDF (hypothetical protein n=1 Tax=Desulfobulbus rhabdoformis TaxID=34032 RepID=UPI0019642DDF)

HSP 1 Score: 84.3 bits (207), Expect = 7.370e-17
Identity = 43/99 (43.43%), Postives = 58/99 (58.59%), Query Frame = 1
Query:   70 RTLYLHIGCGKTGSSALQVWLNHQADVLRRLGVDYPSFGRRKLDDYAITSGNGKKLIDAFAAGQGEALLQKLARSSCDKVFLSSEAFQGMTVESLEELK 366
            + +Y+HIGC KTGSSALQ+WL+  A  L   G+ YP+F R+    Y ITSGNG + + A    +G    + L     + V LSSE FQ +T + L  LK
Sbjct:    2 KKIYMHIGCEKTGSSALQLWLHQNAACLLENGIYYPTFTRKITGQYTITSGNGAEAVKAINKERGARFFEHLFAKGDEDVLLSSEQFQSLTDQQLVGLK 100          
BLAST of mRNA_P-wetherbeei_contig57251.2.1 vs. uniprot
Match: A0A345D9P2_9BURK (Uncharacterized protein n=1 Tax=Ephemeroptericola cinctiostellae TaxID=2268024 RepID=A0A345D9P2_9BURK)

HSP 1 Score: 82.4 bits (202), Expect = 5.550e-16
Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = 1
Query:   70 RTLYLHIGCGKTGSSALQVWLNHQADVLRRLGVDYPSFGRRKLDDYAITSGNGKKLIDAFAAGQGEALLQKLARSSCDKVFLSSEAFQGMTVESLEELK 366
            + +Y+HIGCGKTGSSALQ+WL+     L +  + YPS  + +LD YAITSGNG   +DA  +G+G     +L         LSSEAFQ +  ++L E K
Sbjct:    2 KNIYIHIGCGKTGSSALQLWLHQNIKSLAKANIHYPSTVK-ELDKYAITSGNGVSAVDAIRSGKGLEYFSELIAHG-QNFCLSSEAFQLLDPKNLIEFK 98          
BLAST of mRNA_P-wetherbeei_contig57251.2.1 vs. uniprot
Match: A0A7Y8H0P8_9BURK (Uncharacterized protein n=1 Tax=Hydrogenophaga aromaticivorans TaxID=2610898 RepID=A0A7Y8H0P8_9BURK)

HSP 1 Score: 81.3 bits (199), Expect = 1.850e-15
Identity = 47/102 (46.08%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   70 RTLYLHIGCGKTGSSALQVWLNHQADVLRRLGVDYPSFGRRKLDDYAITSGNGKKLIDAFAAGQGEALLQKLARSSCDKVFLSSEAFQGMTVESLEELKAQA 375
            +TLYLHIGC KTGSSALQVWLN+    L   GV YP+  +  L  + ++ GNG  L  A  +      + K+   S  K+ LSSEAFQ +T + L ELK  A
Sbjct:   48 KTLYLHIGCAKTGSSALQVWLNNNVVALSTQGVKYPNVKQTFLP-HKVSIGNGFTLFRAIKSRHISEEIDKIKSVSESKILLSSEAFQDLTEDDLIELKHHA 148          
BLAST of mRNA_P-wetherbeei_contig57251.2.1 vs. uniprot
Match: A0A1E7Z9H9_9ALTE (Uncharacterized protein n=1 Tax=Alteromonas confluentis TaxID=1656094 RepID=A0A1E7Z9H9_9ALTE)

HSP 1 Score: 71.2 bits (173), Expect = 5.890e-12
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 1
Query:   76 LYLHIGCGKTGSSALQVWLNHQADVLRRLGVDYPSFGRRKLDDYAITSGNGKKLID-------AFAAGQGEALLQKLARSSCDKVFLSSEAF 330
            +++H+G GKTGSSA+Q WLN  +D+L + G  YPS G   +D+  I+SGN   + +        F+  +  A+L+K     C  + LSSEAF
Sbjct:    3 IFIHVGPGKTGSSAIQKWLNDHSDILLQRGFYYPSHG---VDENGISSGNALSIFEYNSNSELCFSEDKANAILKKARTKGCHSLILSSEAF 91          
BLAST of mRNA_P-wetherbeei_contig57251.2.1 vs. uniprot
Match: A0A1T4XP39_9DELT (Uncharacterized protein n=1 Tax=Paucidesulfovibrio gracilis DSM 16080 TaxID=1121449 RepID=A0A1T4XP39_9DELT)

HSP 1 Score: 65.1 bits (157), Expect = 7.800e-10
Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = 1
Query:   70 RTLYLHIGCGKTGSSALQVWLNHQADVLRRLGVDYPSFGRRKLDDYAITSGNGKKLIDAFA-AGQGEALLQKLARSSCDKVFLSSEAF 330
            +TLYLHIG  KTGSSA+Q +L    +VLR  G+DYP  G  K   ++  SGNG+ L  A   + + +  L+++  S  D V +SSE F
Sbjct:    3 KTLYLHIGTPKTGSSAIQTFLEQNREVLRSKGIDYPG-GPAKKTQFSAQSGNGRDLCLAKPDSKEYKHALRQIQASEFDTVLVSSEFF 89          
BLAST of mRNA_P-wetherbeei_contig57251.2.1 vs. uniprot
Match: UPI001C079E10 (hypothetical protein n=1 Tax=Acidithiobacillus ferriphilus TaxID=1689834 RepID=UPI001C079E10)

HSP 1 Score: 65.1 bits (157), Expect = 8.190e-10
Identity = 41/100 (41.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   70 RTLYLHIGCGKTGSSALQVWLNHQADVLRRLGVDYPSFGRRKLDD-YAITSGNGKKLIDAFAAGQGEALLQKLARSSC---DKVFLSSEAFQGMTVESLE 357
            +TLYLHIG GKTGSSA+Q +L   AD L + G+ Y  + +  +   Y ITSGNG  L+ A  +G G + ++ L +S     +K   SSE F  +  E  E
Sbjct:    3 QTLYLHIGGGKTGSSAIQNYLELNADELGKYGIAY--YNKINISSPYEITSGNGIPLVSALLSGNGSSDIETLIKSYIGHQEKGICSSEMFSELKKEHFE 100          
BLAST of mRNA_P-wetherbeei_contig57251.2.1 vs. uniprot
Match: A0A386VV06_VIBPH (Uncharacterized protein n=47 Tax=Vibrio harveyi group TaxID=717610 RepID=A0A386VV06_VIBPH)

HSP 1 Score: 65.1 bits (157), Expect = 8.690e-10
Identity = 37/94 (39.36%), Postives = 53/94 (56.38%), Query Frame = 1
Query:   70 RTLYLHIGCGKTGSSALQVWLNHQADVLRRLGVDYPSFGRRKLDDYAITSGNGKKLIDAFAAG-------QGEALLQKLARSSCDKVFLSSEAF 330
            + +YLH+G GKTG+SA+Q WL H  D L++ GV YPS     LD   ++SGN  ++ D  + G       + E L+ K  +S    + LSSE F
Sbjct:    4 KNIYLHVGPGKTGTSAIQAWLQHNQDWLKKNGVMYPSHA---LDVNEVSSGNVLEIFDRDSRGTEHINAKKCEQLVAKFMKSDSHTLLLSSEWF 94          
BLAST of mRNA_P-wetherbeei_contig57251.2.1 vs. uniprot
Match: UPI00039CEDBC (hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALE11 TaxID=1265494 RepID=UPI00039CEDBC)

HSP 1 Score: 64.7 bits (156), Expect = 1.200e-9
Identity = 42/108 (38.89%), Postives = 52/108 (48.15%), Query Frame = 1
Query:   70 RTLYLHIGCGKTGSSALQVWLNHQADVLRRLGVDYPSFGRRKLDD---------YAITSGNGKKLIDAFAAGQGEALLQKLARSSCDKVFLSSEAFQGMTVESLEELK 366
            +TLYLH+G GKTGSSALQ WL   +  L + G+ YP    R+            Y I+SGN   L  A         L     SS   V  SSE  QG++  +LE LK
Sbjct:    3 KTLYLHVGFGKTGSSALQNWLGEISPSLMKSGIKYPGSHLREDGGGSGISADWAYTISSGNAAPLKRALLKRDAAPFLNAQFSSSQGAVLFSSEGLQGLSPSTLEYLK 110          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57251.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E9SM38_9GAMM4.880e-2452.94Uncharacterized protein n=1 Tax=Spongiibacter sp. ... [more]
UPI001FFC748E3.140e-2354.90hypothetical protein n=1 Tax=Thauera aromatica Tax... [more]
UPI0019642DDF7.370e-1743.43hypothetical protein n=1 Tax=Desulfobulbus rhabdof... [more]
A0A345D9P2_9BURK5.550e-1645.45Uncharacterized protein n=1 Tax=Ephemeroptericola ... [more]
A0A7Y8H0P8_9BURK1.850e-1546.08Uncharacterized protein n=1 Tax=Hydrogenophaga aro... [more]
A0A1E7Z9H9_9ALTE5.890e-1239.13Uncharacterized protein n=1 Tax=Alteromonas conflu... [more]
A0A1T4XP39_9DELT7.800e-1043.18Uncharacterized protein n=1 Tax=Paucidesulfovibrio... [more]
UPI001C079E108.190e-1041.00hypothetical protein n=1 Tax=Acidithiobacillus fer... [more]
A0A386VV06_VIBPH8.690e-1039.36Uncharacterized protein n=47 Tax=Vibrio harveyi gr... [more]
UPI00039CEDBC1.200e-938.89hypothetical protein n=1 Tax=Thioalkalivibrio sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57251contigP-wetherbeei_contig57251:128..502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1307437.J139_00530
Model size375
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.29e-07
EggNOG OGs2C0XC@1|root,32R7R@2|Bacteria,1RJKQ@1224|Proteobacteria,1S87E@1236|Gammaproteobacteria,2Q2X6@267888|Pseudoalteromonadaceae
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186849.2574418-CDS-P-wetherbeei_contig57251:127..5021683186849.2574418-CDS-P-wetherbeei_contig57251:127..502Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57251 128..502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57251.2.1prot_P-wetherbeei_contig57251.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57251 128..502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57251.2.1

>prot_P-wetherbeei_contig57251.2.1 ID=prot_P-wetherbeei_contig57251.2.1|Name=mRNA_P-wetherbeei_contig57251.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
DRLGAAKRWVSEQGSKLSNMSNERTLYLHIGCGKTGSSALQVWLNHQADV
LRRLGVDYPSFGRRKLDDYAITSGNGKKLIDAFAAGQGEALLQKLARSSC
DKVFLSSEAFQGMTVESLEELKAQA
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mRNA from alignment at P-wetherbeei_contig57251:128..502+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57251.2.1 ID=mRNA_P-wetherbeei_contig57251.2.1|Name=mRNA_P-wetherbeei_contig57251.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig57251:128..502+ (Phaeothamnion wetherbeei SAG_119_79)
GATCGGCTGGGCGCCGCGAAGCGGTGGGTCTCCGAACAGGGAAGCAAGCT CTCCAACATGTCGAATGAACGAACCCTCTACCTCCATATCGGCTGCGGCA AGACCGGATCGTCGGCCCTGCAGGTCTGGCTGAACCACCAGGCGGACGTG CTGCGCCGGCTGGGGGTGGACTATCCCTCTTTCGGCCGTCGCAAGCTGGA CGACTACGCGATCACCAGTGGCAACGGCAAGAAACTCATCGACGCCTTCG CTGCGGGGCAGGGAGAAGCTCTCCTGCAAAAACTGGCCCGCTCTTCCTGC GACAAGGTGTTCCTCTCTTCCGAGGCGTTCCAGGGGATGACCGTGGAGAG CCTGGAGGAGCTCAAGGCGCAGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57251:128..502+

>mRNA_P-wetherbeei_contig57251.2.1 ID=mRNA_P-wetherbeei_contig57251.2.1|Name=mRNA_P-wetherbeei_contig57251.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig57251:128..502+ (Phaeothamnion wetherbeei SAG_119_79)
GATCGGCTGGGCGCCGCGAAGCGGTGGGTCTCCGAACAGGGAAGCAAGCT
CTCCAACATGTCGAATGAACGAACCCTCTACCTCCATATCGGCTGCGGCA
AGACCGGATCGTCGGCCCTGCAGGTCTGGCTGAACCACCAGGCGGACGTG
CTGCGCCGGCTGGGGGTGGACTATCCCTCTTTCGGCCGTCGCAAGCTGGA
CGACTACGCGATCACCAGTGGCAACGGCAAGAAACTCATCGACGCCTTCG
CTGCGGGGCAGGGAGAAGCTCTCCTGCAAAAACTGGCCCGCTCTTCCTGC
GACAAGGTGTTCCTCTCTTCCGAGGCGTTCCAGGGGATGACCGTGGAGAG
CCTGGAGGAGCTCAAGGCGCAGGCC
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