mRNA_P-wetherbeei_contig5725.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5725.1.1
Unique NamemRNA_P-wetherbeei_contig5725.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5725.1.1 vs. uniprot
Match: A7SH61_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SH61_NEMVE)

HSP 1 Score: 123 bits (308), Expect = 1.190e-29
Identity = 63/112 (56.25%), Postives = 77/112 (68.75%), Query Frame = 2
Query:  464 PHKTLNSYTGRWYQMFTSIIPLVTFERNAVCVTADYSLNEDGSIAVVNANRVSDPTADGELNTINGTATVPDLDEPGQLVVSFDSGPAMDGDYWIVALGPVVDSQYQYSVVS 799
            P   + SY GRWYQM++  I   TFERNAVCVTADY+L +DG I VVN+NR   P  DGEL  I G A  PD + PG+L V FD+ P ++G YWI+ LGPV   QYQYS+V+
Sbjct:   23 PTLNVTSYLGRWYQMYSDFIVEETFERNAVCVTADYTLRKDGKIGVVNSNRDKKP--DGELKQITGYAYQPDPEVPGKLKVHFDTVP-VEGSYWILKLGPVSGGQYQYSIVT 131          
BLAST of mRNA_P-wetherbeei_contig5725.1.1 vs. uniprot
Match: A0A6P8IR58_ACTTE (temperature-induced lipocalin-1-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IR58_ACTTE)

HSP 1 Score: 112 bits (281), Expect = 1.080e-25
Identity = 57/108 (52.78%), Postives = 71/108 (65.74%), Query Frame = 2
Query:  485 YTGRWYQMFTSIIPLVTFERNAVCVTADYSLNEDGSIAVVNANRVSDPTADGELNTINGTATVPDLDEPGQLVVSFDSGPAMDGDYWIVALGPVV---DSQYQYSVVS 799
            Y GRWYQM++ +  + TFERN VC+ ADY+L +DG I V+N+ R+  PT  GEL  I G A  PD   PG+L V FD  P +DG YWIV LGP     D QYQYS+V+
Sbjct:   32 YLGRWYQMYSDLTVMSTFERNGVCICADYTLRKDGKIGVLNSLRIKTPT--GELKQITGYAYTPDPKVPGKLKVHFDVAP-VDGSYWIVKLGPQTFGSDKQYQYSIVT 136          
BLAST of mRNA_P-wetherbeei_contig5725.1.1 vs. uniprot
Match: UPI000A2A5FF2 (temperature-induced lipocalin-1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A5FF2)

HSP 1 Score: 112 bits (280), Expect = 1.510e-25
Identity = 56/111 (50.45%), Postives = 74/111 (66.67%), Query Frame = 2
Query:  476 LNSYTGRWYQMFTSIIPLVTFERNAVCVTADYSLNEDGSIAVVNANRVSDPTADGELNTINGTATVPDLDEPGQLVVSFDSGPAMDGDYWIVALGPVV---DSQYQYSVVS 799
            +  Y GRWYQM+   I + TFE+N VC+TADY++ +D  I V+N+ R+  PT  G L+ I G A VPD  EPG+L V FD  P +DGDYW++ LGP     D +YQYSVV+
Sbjct:   29 ITRYLGRWYQMYGDKIVMSTFEKNGVCITADYTVRKDEKIGVLNSQRIKTPT--GNLSQITGYAYVPDPKEPGKLKVHFDVSP-VDGDYWVIKLGPQSFGEDKKYQYSVVT 136          
BLAST of mRNA_P-wetherbeei_contig5725.1.1 vs. uniprot
Match: UPI0018DA05B6 (uncharacterized protein LOC119736785 n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018DA05B6)

HSP 1 Score: 116 bits (290), Expect = 2.510e-25
Identity = 67/133 (50.38%), Postives = 79/133 (59.40%), Query Frame = 2
Query:  434 PSXXXXXXXNPHKT-----LNSYTGRWYQMFTSIIPLVTFERNAVCVTADYSLNEDGSIAVVNANRVSDPTADGELNTINGTATVPDLDEPGQLVVSFDSGPAMDGDYWIVALGPVV------DSQYQYSVVS 799
            PS       +P KT     LNSY GRWYQMF  ++   TFERNA CVTADY+LN + +I+V NAN V  PT  G  N I G A VPD  +PGQL+V F   P   G YW+V LGP        D QYQYS+V+
Sbjct:  206 PSLAAPGYASPPKTVGELDLNSYLGRWYQMFADLVVDSTFERNAYCVTADYALNPNKTISVYNANTVGSPT--GARNAIKGYAYVPDPSQPGQLLVKFPVTPVA-GSYWVVQLGPKETTWRDSDPQYQYSIVT 335          
BLAST of mRNA_P-wetherbeei_contig5725.1.1 vs. uniprot
Match: A0A7S2UUY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUY8_9STRA)

HSP 1 Score: 104 bits (260), Expect = 9.890e-24
Identity = 56/106 (52.83%), Postives = 72/106 (67.92%), Query Frame = 2
Query:  476 LNSYTGRWYQMFTSIIPLVTFERNAVCVTADYSLNE----DGSIAVVNANRVSDPTADGELNTINGTATVPDLDEPGQLVVSFDSGPAMD-GDYWIVALGPVVDSQ 778
            + SY GRWYQ + S    +T ERNAVCVTADY +++    DG+I+V+N NRV  P  DG  ++I+G A VPD +EPGQL V F S P    GDYW++ALGP V +Q
Sbjct:    7 IESYLGRWYQAYASQSVYMTIERNAVCVTADYGMDDXXXXDGTISVLNQNRVGTP--DGAPHSISGYAFVPDEEEPGQLKVVFPSAPGSSAGDYWVMALGPPVATQ 110          
BLAST of mRNA_P-wetherbeei_contig5725.1.1 vs. uniprot
Match: A0A8B6XKD6_HYDVU (apolipoprotein D-like n=1 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6XKD6_HYDVU)

HSP 1 Score: 105 bits (261), Expect = 1.660e-23
Identity = 58/112 (51.79%), Postives = 72/112 (64.29%), Query Frame = 2
Query:  476 LNSYTGRWYQMFTSIIPLVTFERNAVCVTADYSLNEDGSIAVVNANRVSDPTADGELNTINGTATVPDLDEPGQLVVSFDSGPAMDG-DYWIVALGPVV---DSQYQYSVVS 799
            LN Y GRWY+ ++S+I   TF+RN VC TADYSL  DG+I VVNA R+  PT  G  + I GTATV D + PG L V+F   P + G +Y IV LGP     D  Y+YSVV+
Sbjct:   27 LNKYLGRWYETYSSLIQRQTFQRNLVCTTADYSLQADGNIKVVNAGRLKTPTGLG--SNITGTATVLDANHPGALRVTFPGTPNLPGANYLIVKLGPTTFGNDGLYEYSVVT 136          
BLAST of mRNA_P-wetherbeei_contig5725.1.1 vs. uniprot
Match: UPI000192729D (outer membrane lipoprotein Blc n=1 Tax=Hydra vulgaris TaxID=6087 RepID=UPI000192729D)

HSP 1 Score: 105 bits (261), Expect = 4.950e-23
Identity = 58/112 (51.79%), Postives = 72/112 (64.29%), Query Frame = 2
Query:  476 LNSYTGRWYQMFTSIIPLVTFERNAVCVTADYSLNEDGSIAVVNANRVSDPTADGELNTINGTATVPDLDEPGQLVVSFDSGPAMDG-DYWIVALGPVV---DSQYQYSVVS 799
            LN Y GRWY+ ++S+I   TF+RN VC TADYSL  DG+I VVNA R+  PT  G  + I GTATV D + PG L V+F   P + G +Y IV LGP     D  Y+YSVV+
Sbjct:   27 LNKYLGRWYETYSSLIQRQTFQRNLVCTTADYSLQADGNIKVVNAGRLKTPTGLG--SNITGTATVLDANHPGALRVTFPGTPNLPGANYLIVKLGPTTFGNDGLYEYSVVT 136          
BLAST of mRNA_P-wetherbeei_contig5725.1.1 vs. uniprot
Match: UPI001BB14092 (outer membrane lipoprotein Blc-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB14092)

HSP 1 Score: 104 bits (259), Expect = 1.380e-22
Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 2
Query:  476 LNSYTGRWYQMFTSIIPLVTFERNAVCVTADYSLNEDGSIAVVNANRVSDPTADGELNTINGTATVPDLDEPGQLVVSFDSGPAMDGDYWIVALGPVVDSQYQYSVVS 799
            +++Y GRWY+M++ ++   TFERN+ C TA Y    D ++ V N+ R+  PT  G  + I G A V D  EPGQL + F + P   GDYW++ALGPV D++YQY+VV+
Sbjct:   39 IDNYVGRWYEMYSDLVVKATFERNSYCTTATYGKINDTAVTVFNSGRLGSPT--GPPSEIRGMAYVADAAEPGQLKLKFPNIPL--GDYWVIALGPVEDNEYQYAVVT 142          
BLAST of mRNA_P-wetherbeei_contig5725.1.1 vs. uniprot
Match: A0A8B7YCF9_ACAPL (uncharacterized protein LOC110978570 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YCF9_ACAPL)

HSP 1 Score: 108 bits (270), Expect = 1.720e-22
Identity = 60/124 (48.39%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  461 NPHKTLN-----SYTGRWYQMFTSIIPLVTFERNAVCVTADYSLNEDGSIAVVNANRVSDPTADGELNTINGTATVPDLDEPGQLVVSFDSGPAMDGDYWIVALGPV------VDSQYQYSVVS 799
            +P KT++     SY GRWYQMF  ++ + TFERNA CVTADY LN + +I+V NAN    PT  G    I G A VP+ +EPGQL+V F   P + G YW++ LGP          QYQYS+VS
Sbjct:  234 SPPKTVSELDVQSYLGRWYQMFADLVVVSTFERNADCVTADYGLNPNNTISVYNANTDGSPT--GPRKAIKGYAYVPNKNEPGQLLVKFPVNP-IPGPYWVIQLGPKETTWRNAQPQYQYSIVS 354          
BLAST of mRNA_P-wetherbeei_contig5725.1.1 vs. uniprot
Match: UPI000F551639 (temperature-induced lipocalin-1-like n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F551639)

HSP 1 Score: 103 bits (256), Expect = 3.500e-22
Identity = 52/114 (45.61%), Postives = 72/114 (63.16%), Query Frame = 2
Query:  464 PHKTLNSYTGRWYQMFTSIIPLVTFERNAVCVTADYSLNEDGSIAVVNANRVSDPTADGELNTINGTATVPDLDEPGQLVVSFDSGPAMDGDYWIVALGPVV--DSQYQYSVVS 799
            P   +  Y GRWYQM+     + TFER+AVCVTADY+L +DG + V+N+ R+  PT +G+   I G A +PD ++PG+L V     P +D  YW+V LGP    +  YQYSVV+
Sbjct:   22 PSLNVTKYLGRWYQMYADPSVMATFERDAVCVTADYTLEKDGKVGVLNSERLRTPTGEGK--NITGYAYIPDPNQPGKLKVHLGGVP-VDAPYWVVKLGPPTFGEGLYQYSVVT 132          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5725.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A7SH61_NEMVE1.190e-2956.25Predicted protein n=1 Tax=Nematostella vectensis T... [more]
A0A6P8IR58_ACTTE1.080e-2552.78temperature-induced lipocalin-1-like n=1 Tax=Actin... [more]
UPI000A2A5FF21.510e-2550.45temperature-induced lipocalin-1 n=1 Tax=Exaiptasia... [more]
UPI0018DA05B62.510e-2550.38uncharacterized protein LOC119736785 n=1 Tax=Patir... [more]
A0A7S2UUY8_9STRA9.890e-2452.83Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A8B6XKD6_HYDVU1.660e-2351.79apolipoprotein D-like n=1 Tax=Hydra vulgaris TaxID... [more]
UPI000192729D4.950e-2351.79outer membrane lipoprotein Blc n=1 Tax=Hydra vulga... [more]
UPI001BB140921.380e-2245.37outer membrane lipoprotein Blc-like n=1 Tax=Lytech... [more]
A0A8B7YCF9_ACAPL1.720e-2248.39uncharacterized protein LOC110978570 n=1 Tax=Acant... [more]
UPI000F5516393.500e-2245.61temperature-induced lipocalin-1-like n=1 Tax=Pocil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5725contigP-wetherbeei_contig5725:2..1197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7668.SPU_028203-tr
PFAMsLipocalin_2
Model size1196
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.27e-32
EggNOG OGsCOG3040@1|root,KOG4824@2759|Eukaryota,39NHK@33154|Opisthokonta,3CQ1W@33208|Metazoa
DescriptionLipocalin-like domain
Cds size309
COG categoryM
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186849.1682699-UTR-P-wetherbeei_contig5725:1..3831683186849.1682699-UTR-P-wetherbeei_contig5725:1..383Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5725 2..383 -
1683186849.1891627-UTR-P-wetherbeei_contig5725:692..11971683186849.1891627-UTR-P-wetherbeei_contig5725:692..1197Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5725 693..1197 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186849.1795835-CDS-P-wetherbeei_contig5725:383..6921683186849.1795835-CDS-P-wetherbeei_contig5725:383..692Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5725 384..692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5725.1.1prot_P-wetherbeei_contig5725.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5725 384..692 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5725.1.1

>prot_P-wetherbeei_contig5725.1.1 ID=prot_P-wetherbeei_contig5725.1.1|Name=mRNA_P-wetherbeei_contig5725.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
MFTSIIPLVTFERNAVCVTADYSLNEDGSIAVVNANRVSDPTADGELNTI
NGTATVPDLDEPGQLVVSFDSGPAMDGDYWIVALGPVVDSQYQYSVVSGD
DG*
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mRNA from alignment at P-wetherbeei_contig5725:2..1197-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5725.1.1 ID=mRNA_P-wetherbeei_contig5725.1.1|Name=mRNA_P-wetherbeei_contig5725.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1196bp|location=Sequence derived from alignment at P-wetherbeei_contig5725:2..1197- (Phaeothamnion wetherbeei SAG_119_79)
GTGACCCGGATGAGGTTTTCGGCGGGCTTATCGACCAGTTGAAGAGTGCG ATCGGGCCAAATACCGTTGACGAAGTGGACCTCGAATCGTAAGTGGCAAA CCCACCTTTGCAACTCCCCGTCGTCAGCTGCAGCCTTTCCGCTGTTCCTG CCTAATACCTTTCTGGCCTCTAAGGTTGCGTCCTTTGCTCATTTACGACG ACCATTTCTCCTGACCCTTTTCTTGTCCTGCTTTGCATTGATTACTCCCG CTGGGCCAGAGACGTTCTGTTGTGCTTAACACGTTCCCTGCTTGTGGACG TCTTTTCTCTTTGCATCACTCGCTCCCGCCTTGGCGGGCATTCTCCGTTG CTTTGCCACGTTCTTACTTTACTCCATTTCTCGCGTCTGGCCCCCGAACC GCCCTTTCCTCCCCAACCACCGCTTCCTTTCCGCCCTCAACCACCACTTC CTTTCCTCCGAACCCGCATAAAACCCTCAACAGCTACACAGGCCGCTGGT ACCAGATGTTCACGTCGATCATCCCGCTGGTGACTTTTGAGCGCAACGCC GTGTGCGTCACCGCGGACTACTCCCTCAACGAAGACGGCAGCATCGCCGT CGTCAACGCCAACCGCGTCTCCGACCCGACCGCCGATGGCGAGCTCAACA CCATCAACGGAACAGCAACGGTGCCCGATTTGGACGAGCCAGGGCAGCTG GTCGTGAGCTTTGACTCGGGCCCAGCGATGGACGGCGACTACTGGATCGT GGCGCTGGGGCCCGTCGTCGACAGCCAGTACCAGTACTCAGTGGTGAGTG GCGATGACGGATAAGGATGTGGCGGAAGCTGTGAATGTTAAGGCGGCGGC GATGGCGGTGGCGGCGGTGGCGGCGGTGGCGGCGGTGGCTGCAGTGATCA GGCACCTATTTGTTATTTCCCTTGAGGCTTACCTTTGATATTTGGCATTT CCATTTATTGCCCCTATTTAAGGGATGCCGGTTTTCAACGACAACGATTC TTTTCTGTCCTCTCCCTTGATTCACCTCTCTACGAGACTAAAATCCCTTC GCTTTTCGCTAAACTCCTCTCTCTTTTCCTCTCTCTTCCTCCCTCTTTGT TCTTCCTTCCTGCTCCGCCAATCCCAAAACCTCCCAAACCCCATAACGAA CAACGGCAGGTGACGGAGCCGCCGCGAACCATCCTCTCCCTGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5725:2..1197-

>mRNA_P-wetherbeei_contig5725.1.1 ID=mRNA_P-wetherbeei_contig5725.1.1|Name=mRNA_P-wetherbeei_contig5725.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig5725:2..1197- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCACGTCGATCATCCCGCTGGTGACTTTTGAGCGCAACGCCGTGTG
CGTCACCGCGGACTACTCCCTCAACGAAGACGGCAGCATCGCCGTCGTCA
ACGCCAACCGCGTCTCCGACCCGACCGCCGATGGCGAGCTCAACACCATC
AACGGAACAGCAACGGTGCCCGATTTGGACGAGCCAGGGCAGCTGGTCGT
GAGCTTTGACTCGGGCCCAGCGATGGACGGCGACTACTGGATCGTGGCGC
TGGGGCCCGTCGTCGACAGCCAGTACCAGTACTCAGTGGTGAGTGGCGAT
GACGGATAA
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