mRNA_P-wetherbeei_contig5722.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5722.2.1
Unique NamemRNA_P-wetherbeei_contig5722.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5722.2.1 vs. uniprot
Match: D8LSN0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN0_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 4.750e-21
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    4 QDCGRTKYFGDAWNSETKRCEYRKCADTCSNSDWTMEWEGNSYTRERHCCTSDYCNPAAR 183
            +DCGRT YFGD WN++T +CEYRKC  TC  S W  E+EG +Y R R CC  +YCN  +R
Sbjct:   53 EDCGRTTYFGDKWNAQTGKCEYRKCEATCLESSWDFEFEGEAYERNRFCCDFNYCNGISR 112
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5722.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSN0_ECTSI4.750e-2156.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5722contigP-wetherbeei_contig5722:3394..3576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size183
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_002280.1
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186849.0526667-CDS-P-wetherbeei_contig5722:3393..35761683186849.0526667-CDS-P-wetherbeei_contig5722:3393..3576Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5722 3394..3576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5722.2.1prot_P-wetherbeei_contig5722.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5722 3394..3576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5722.2.1

>prot_P-wetherbeei_contig5722.2.1 ID=prot_P-wetherbeei_contig5722.2.1|Name=mRNA_P-wetherbeei_contig5722.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=61bp
MQDCGRTKYFGDAWNSETKRCEYRKCADTCSNSDWTMEWEGNSYTRERHC
CTSDYCNPAAR
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mRNA from alignment at P-wetherbeei_contig5722:3394..3576+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5722.2.1 ID=mRNA_P-wetherbeei_contig5722.2.1|Name=mRNA_P-wetherbeei_contig5722.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig5722:3394..3576+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGACTGCGGAAGAACCAAGTACTTCGGCGACGCCTGGAATTCGGA
GACGAAGCGCTGCGAATACCGAAAATGCGCCGACACGTGCTCGAACTCGG
ACTGGACTATGGAATGGGAAGGGAATTCCTATACGCGAGAACGCCATTGC
TGCACGTCAGACTATTGCAATCCCGCTGCAAGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5722:3394..3576+

>mRNA_P-wetherbeei_contig5722.2.1 ID=mRNA_P-wetherbeei_contig5722.2.1|Name=mRNA_P-wetherbeei_contig5722.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig5722:3394..3576+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGACTGCGGAAGAACCAAGTACTTCGGCGACGCCTGGAATTCGGA
GACGAAGCGCTGCGAATACCGAAAATGCGCCGACACGTGCTCGAACTCGG
ACTGGACTATGGAATGGGAAGGGAATTCCTATACGCGAGAACGCCATTGC
TGCACGTCAGACTATTGCAATCCCGCTGCAAGA
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